data_7EUC # _entry.id 7EUC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.370 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7EUC pdb_00007euc 10.2210/pdb7euc/pdb WWPDB D_1300021766 ? ? BMRB 36421 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Four layer parallel G-quadruplex with L-serinol loop modifications' _pdbx_database_related.db_id 36421 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7EUC _pdbx_database_status.recvd_initial_deposition_date 2021-05-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Winnerdy, F.R.' 1 0000-0002-5010-4719 'Devi, G.' 2 0000-0002-9080-4656 'Ang, J.C.Y.' 3 ? 'Lim, K.W.' 4 0000-0003-3066-1494 'Phan, A.T.' 5 0000-0002-4970-3861 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Nano' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1936-086X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 533 _citation.page_last 540 _citation.title 'Four-Layered Intramolecular Parallel G-Quadruplex with Non-Nucleotide Loops: An Ultra-Stable Self-Folded DNA Nano-Scaffold.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acsnano.1c07630 _citation.pdbx_database_id_PubMed 34927423 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Devi, G.' 1 ? primary 'Winnerdy, F.R.' 2 ? primary 'Ang, J.C.Y.' 3 ? primary 'Lim, K.W.' 4 ? primary 'Phan, A.T.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*GP*GP*GP*G)-3') ; 1880.251 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*GP*GP*GP*G)-3') ; 1271.866 2 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*GP*GP*GP*T)-3') ; 1576.059 1 ? ? ? ? 4 non-polymer syn O-PHOSPHOETHANOLAMINE 171.089 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DG)(DG)(DG)' TTGGGG A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)' GGGG B,C ? 3 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DG)(DT)' GGGGT D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DG n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DG n 3 1 DG n 3 2 DG n 3 3 DG n 3 4 DG n 3 5 DT n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 6 'synthetic construct' ? 32630 ? 2 1 sample 1 4 'synthetic construct' ? 32630 ? 3 1 sample 1 5 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7EUC 7EUC ? 1 ? 1 2 PDB 7EUC 7EUC ? 2 ? 1 3 PDB 7EUC 7EUC ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7EUC A 1 ? 6 ? 7EUC 1 ? 6 ? 1 6 2 2 7EUC B 1 ? 4 ? 7EUC 9 ? 12 ? 9 12 3 2 7EUC C 1 ? 4 ? 7EUC 15 ? 18 ? 15 18 4 3 7EUC D 1 ? 5 ? 7EUC 21 ? 25 ? 21 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 PSE non-polymer . O-PHOSPHOETHANOLAMINE ? 'C3 H10 N O5 P' 171.089 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 'H2O NOESY' 1 isotropic 2 1 2 'D2O NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM DNA (25-MER), 70 mM potassium chloride, 20 mM potassium phosphate, 90% H2O/10% D2O' '90% H2O/10% D2O' H2O_sample solution ? 2 '1 mM DNA (25-MER), 70 mM potassium chloride, 20 mM potassium phosphate, 100% D2O' '100% D2O' D2O_sample solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 7EUC 'DGSA-distance geometry simulated annealing' ? 6 7EUC 'molecular dynamics' ? 7 # _pdbx_nmr_ensemble.entry_id 7EUC _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7EUC _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 processing TopSpin ? 'Bruker Biospin' 3 'peak picking' NMRFAM-SPARKY ? 'Lee, W., Tonelli, M., Markley, J.L.' 4 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee, W., Tonelli, M., Markley, J.L.' 5 'data analysis' NMRFAM-SPARKY ? 'Lee, W., Tonelli, M., Markley, J.L.' 6 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 7 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7EUC _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7EUC _struct.title 'Parallel G-quadruplex structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7EUC _struct_keywords.text 'G-quadruplex, Four-layer, Parallel, L-serinol, Stable, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A DG 6 "O3'" ? ? ? 1_555 E PSE . P ? ? A DG 6 A PSE 101 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale none ? E PSE . O1 ? ? ? 1_555 F PSE . P ? ? A PSE 101 B PSE 101 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale3 covale one ? B DG 1 P ? ? ? 1_555 F PSE . O1 ? ? B DG 9 B PSE 101 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale one ? B DG 4 "O3'" ? ? ? 1_555 G PSE . P ? ? B DG 12 B PSE 102 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale5 covale none ? G PSE . O1 ? ? ? 1_555 H PSE . P ? ? B PSE 102 C PSE 101 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale6 covale one ? C DG 1 P ? ? ? 1_555 H PSE . O1 ? ? C DG 15 C PSE 101 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale7 covale one ? C DG 4 "O3'" ? ? ? 1_555 I PSE . P ? ? C DG 18 C PSE 102 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale8 covale none ? I PSE . O1 ? ? ? 1_555 J PSE . P ? ? C PSE 102 D PSE 101 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale9 covale one ? D DG 1 P ? ? ? 1_555 J PSE . O1 ? ? D DG 21 D PSE 101 1_555 ? ? ? ? ? ? ? 1.610 ? ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 3 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DG 1 N7 ? ? A DG 3 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N7 ? ? ? 1_555 D DG 1 N2 ? ? A DG 3 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 D DG 1 N1 ? ? A DG 3 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 4 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 4 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N7 ? ? ? 1_555 D DG 2 N2 ? ? A DG 4 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 D DG 2 N1 ? ? A DG 4 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 5 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 5 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 D DG 3 N2 ? ? A DG 5 D DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 D DG 3 N1 ? ? A DG 5 D DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 6 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 6 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 6 N7 ? ? ? 1_555 D DG 4 N2 ? ? A DG 6 D DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 D DG 4 N1 ? ? A DG 6 D DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DG 1 O6 ? ? B DG 9 C DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DG 1 N7 ? ? B DG 9 C DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DG 2 O6 ? ? B DG 10 C DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DG 2 N7 ? ? B DG 10 C DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DG 3 O6 ? ? B DG 11 C DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DG 3 N7 ? ? B DG 11 C DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DG 4 O6 ? ? B DG 12 C DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DG 4 N7 ? ? B DG 12 C DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DG 1 O6 ? ? C DG 15 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DG 1 N7 ? ? C DG 15 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? C DG 16 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? C DG 16 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? C DG 17 D DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? C DG 17 D DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? C DG 18 D DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? C DG 18 D DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 7EUC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n B 2 1 DG 1 9 9 DG DG B . n B 2 2 DG 2 10 10 DG DG B . n B 2 3 DG 3 11 11 DG DG B . n B 2 4 DG 4 12 12 DG DG B . n C 2 1 DG 1 15 15 DG DG C . n C 2 2 DG 2 16 16 DG DG C . n C 2 3 DG 3 17 17 DG DG C . n C 2 4 DG 4 18 18 DG DG C . n D 3 1 DG 1 21 21 DG DG D . n D 3 2 DG 2 22 22 DG DG D . n D 3 3 DG 3 23 23 DG DG D . n D 3 4 DG 4 24 24 DG DG D . n D 3 5 DT 5 25 25 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PSE 1 101 7 PSE PSE A . F 4 PSE 1 101 8 PSE PSE B . G 4 PSE 1 102 13 PSE PSE B . H 4 PSE 1 101 14 PSE PSE C . I 4 PSE 1 102 19 PSE PSE C . J 4 PSE 1 101 20 PSE PSE D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-03-30 2 'Structure model' 1 1 2022-11-23 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 7EUC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'DNA (25-MER)' 1 ? mM 'natural abundance' 1 'potassium chloride' 70 ? mM 'natural abundance' 1 'potassium phosphate' 20 ? mM 'natural abundance' 2 'DNA (25-MER)' 1 ? mM 'natural abundance' 2 'potassium chloride' 70 ? mM 'natural abundance' 2 'potassium phosphate' 20 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 "H3'" C DG 15 ? ? O1 C PSE 101 ? ? 1.56 2 2 OP1 C DG 15 ? ? HN21 C PSE 101 ? ? 1.59 3 8 "H3'" B DG 9 ? ? O1 B PSE 101 ? ? 1.50 # _ndb_struct_conf_na.entry_id 7EUC _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 6 1_555 B DG 4 1_555 0.370 3.837 0.026 -2.690 -3.905 -90.232 1 A_DG6:DG12_B A 6 ? B 12 ? 6 3 1 D DG 4 1_555 C DG 4 1_555 -0.368 -3.834 -0.031 3.175 4.591 90.044 2 D_DG24:DG18_C D 24 ? C 18 ? 6 3 1 A DG 5 1_555 B DG 3 1_555 0.751 3.873 -0.123 2.137 -4.229 -91.487 3 A_DG5:DG11_B A 5 ? B 11 ? 6 3 1 D DG 3 1_555 C DG 3 1_555 -0.744 -3.874 0.105 -2.011 4.519 90.340 4 D_DG23:DG17_C D 23 ? C 17 ? 6 3 1 D DG 2 1_555 C DG 2 1_555 -1.192 -3.877 0.066 -1.808 4.584 89.538 5 D_DG22:DG16_C D 22 ? C 16 ? 6 3 1 A DG 3 1_555 D DG 1 1_555 -2.171 -3.509 -0.044 -5.178 5.845 87.956 6 A_DG3:DG21_D A 3 ? D 21 ? 6 3 1 B DG 1 1_555 C DG 1 1_555 2.062 3.578 0.041 2.910 -3.220 -88.636 7 B_DG9:DG15_C B 9 ? C 15 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 6 1_555 B DG 4 1_555 D DG 4 1_555 C DG 4 1_555 0.428 3.842 -0.004 -1.121 -1.180 -179.991 -1.921 0.214 -0.004 0.590 -0.561 -179.991 1 AD_DG6DG24:DG18DG12_CB A 6 ? B 12 ? D 24 ? C 18 ? 1 D DG 4 1_555 C DG 4 1_555 A DG 5 1_555 B DG 3 1_555 -0.637 -3.687 -3.779 -0.469 3.142 150.432 -1.892 0.331 -3.805 1.625 0.242 150.444 2 DA_DG24DG5:DG11DG18_BC D 24 ? C 18 ? A 5 ? B 11 ? 1 D DG 3 1_555 C DG 3 1_555 D DG 2 1_555 C DG 2 1_555 0.347 1.026 -3.594 0.035 -1.583 -28.502 -2.473 0.694 -3.533 3.212 0.072 -28.545 3 DD_DG23DG22:DG16DG17_CC D 23 ? C 17 ? D 22 ? C 16 ? 1 D DG 2 1_555 C DG 2 1_555 A DG 3 1_555 D DG 1 1_555 -0.520 -1.543 -4.188 -0.889 4.710 64.696 -1.183 0.533 -4.273 4.395 0.829 64.855 4 DA_DG22DG3:DG21DG16_DC D 22 ? C 16 ? A 3 ? D 21 ? 1 A DG 3 1_555 D DG 1 1_555 B DG 1 1_555 C DG 1 1_555 -1.971 -3.450 0.200 -5.899 3.795 179.274 -1.725 0.986 0.200 1.898 2.950 179.275 5 AB_DG3DG9:DG15DG21_CD A 3 ? D 21 ? B 9 ? C 15 ? # _pdbx_audit_support.funding_organization 'National Research Foundation (NRF, Singapore)' _pdbx_audit_support.country Singapore _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name O-PHOSPHOETHANOLAMINE _pdbx_entity_nonpoly.comp_id PSE # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #