HEADER OXIDOREDUCTASE 18-MAY-21 7EUS TITLE CRYSTAL STRUCTURES OF 2-OXOGLUTARATE DEPENDENT DIOXYGENASE (CTB9) FROM TITLE 2 CERCOSPORA SP. JNU001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE (2-OG)-DEPENDENT DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERCOSPORA SOJINA; SOURCE 3 ORGANISM_TAXID: 438356; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE, CERCOSPORIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR X.D.HOU,X.Z.LIU,Z.B.YUAN,Y.J.RAO REVDAT 1 25-MAY-22 7EUS 0 JRNL AUTH X.Z.LIU,Z.B.YUAN,H.SU,X.D.HOU,Z.W.DENG,H.B.XU,B.D.GUO,D.YIN, JRNL AUTH 2 X.SHENG,Y.J.RAO JRNL TITL MOLECULAR BASIS OF THE UNUSUAL SEVEN-MEMBERED METHYLENEDIOXY JRNL TITL 2 BRIDGE FORMATION CATALYZED BY FE(II)/ALPHA-KG-DEPENDENT JRNL TITL 3 OXYGENASE CTB9 JRNL REF ACS CATALYSIS V. 12 3689 2022 JRNL REFN ESSN 2155-5435 JRNL DOI DOI.ORG/10.1021/ACSCATAL.1C04627 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 25304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2784 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.407 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.798 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4895 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4380 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6646 ; 1.646 ; 1.668 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10145 ; 1.220 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 7.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;32.800 ;20.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;18.133 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;17.215 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5525 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1129 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28264 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM BIS-TRIS PH 6.5, 3% (V/V) REMARK 280 GLYCEROL, 25% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 73.95800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 GLN A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 PHE A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 PRO A 21 REMARK 465 SER A 22 REMARK 465 PRO A 23 REMARK 465 PRO A 24 REMARK 465 GLU A 25 REMARK 465 ASP A 26 REMARK 465 VAL A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 PRO A 33 REMARK 465 GLU A 34 REMARK 465 GLU A 324 REMARK 465 ALA A 325 REMARK 465 LEU A 326 REMARK 465 GLU A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 THR B 7 REMARK 465 THR B 8 REMARK 465 GLU B 9 REMARK 465 THR B 10 REMARK 465 LEU B 11 REMARK 465 GLN B 12 REMARK 465 GLU B 13 REMARK 465 ALA B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 PHE B 17 REMARK 465 VAL B 18 REMARK 465 ALA B 19 REMARK 465 PRO B 20 REMARK 465 PRO B 21 REMARK 465 SER B 22 REMARK 465 PRO B 23 REMARK 465 PRO B 24 REMARK 465 GLU B 25 REMARK 465 ASP B 26 REMARK 465 VAL B 27 REMARK 465 ASN B 28 REMARK 465 ASN B 29 REMARK 465 LYS B 30 REMARK 465 GLU B 31 REMARK 465 ALA B 323 REMARK 465 GLU B 324 REMARK 465 ALA B 325 REMARK 465 LEU B 326 REMARK 465 GLU B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 140 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 MSE B 238 CG - SE - CE ANGL. DEV. = 14.5 DEGREES REMARK 500 MSE B 250 CG - SE - CE ANGL. DEV. = 19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 141 -4.54 -149.07 REMARK 500 SER A 174 172.75 -54.09 REMARK 500 GLU A 214 64.27 37.33 REMARK 500 ASP A 286 -156.64 -75.83 REMARK 500 THR A 288 129.06 -33.19 REMARK 500 ARG A 291 130.49 -171.90 REMARK 500 SER B 141 -2.35 -159.68 REMARK 500 ARG B 167 57.59 -98.56 REMARK 500 ASP B 220 117.21 -39.11 REMARK 500 ARG B 291 138.23 -171.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 ASP A 172 OD1 93.6 REMARK 620 3 HIS A 294 NE2 82.7 83.4 REMARK 620 4 HOH A 511 O 90.7 85.1 166.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 170 NE2 REMARK 620 2 ASP B 172 OD1 89.7 REMARK 620 3 HIS B 294 NE2 87.1 90.1 REMARK 620 4 HOH B 562 O 168.4 93.1 81.7 REMARK 620 5 HOH B 583 O 86.9 91.9 173.6 104.2 REMARK 620 N 1 2 3 4 DBREF 7EUS A 1 333 PDB 7EUS 7EUS 1 333 DBREF 7EUS B 1 333 PDB 7EUS 7EUS 1 333 SEQRES 1 A 333 MSE THR SER THR THR THR THR THR GLU THR LEU GLN GLU SEQRES 2 A 333 ALA VAL PRO PHE VAL ALA PRO PRO SER PRO PRO GLU ASP SEQRES 3 A 333 VAL ASN ASN LYS GLU LEU PRO GLU LYS PRO TYR TYR ASP SEQRES 4 A 333 VAL GLU PHE ASN TYR ARG LEU ASP PRO ARG ASP GLY GLY SEQRES 5 A 333 ASP GLU VAL ILE TRP GLY GLY THR VAL GLY LEU MSE ARG SEQRES 6 A 333 ARG LYS TYR GLU THR ARG THR VAL ARG ILE ASN ASN GLU SEQRES 7 A 333 ARG GLY ASN GLU HIS ASN PHE ASN LEU ASP THR HIS GLY SEQRES 8 A 333 PHE ALA TRP VAL LYS HIS LYS THR SER VAL THR GLU PHE SEQRES 9 A 333 ALA ASP TYR LEU ALA ILE ARG GLN GLY PRO TYR TYR GLY SEQRES 10 A 333 GLU VAL ALA GLU MSE LEU LYS ARG VAL THR GLY ALA THR SEQRES 11 A 333 LYS VAL HIS VAL ILE GLY HIS LEU HIS ARG SER LEU ASN SEQRES 12 A 333 TYR ASN ASP THR THR GLU GLU GLU LYS ASN ALA PRO ASP SEQRES 13 A 333 MSE THR MSE THR LYS GLY GLN THR PRO GLY ARG PHE VAL SEQRES 14 A 333 HIS VAL ASP GLN SER TYR GLN GLY ALA VAL ARG ARG LEU SEQRES 15 A 333 TYR LEU ASP LEU PRO GLN GLU GLU ALA ARG ARG LEU GLU SEQRES 16 A 333 LYS THR ARG TRP ALA ILE ILE ASN VAL TRP ARG PRO VAL SEQRES 17 A 333 ARG LYS VAL THR ASN GLU PRO LEU ALA VAL CYS ASP ALA SEQRES 18 A 333 ARG SER VAL ARG GLU ASP GLU LEU PHE ASN THR LEU HIS SEQRES 19 A 333 LEU VAL PRO MSE ARG TRP PRO ASP ALA ALA PRO GLN GLU SEQRES 20 A 333 ASN GLN MSE TRP ALA VAL ALA PRO PRO LYS THR PRO THR SEQRES 21 A 333 GLN HIS LYS TRP HIS TYR VAL SER GLY MSE THR GLU ASP SEQRES 22 A 333 GLU ALA LEU LEU ILE LYS MSE PHE ASP SER LYS LYS ASP SEQRES 23 A 333 GLY THR ALA ARG ARG VAL PRO HIS SER SER PHE PRO THR SEQRES 24 A 333 PRO ASP ASP PHE GLY GLU PRO ARG ALA SER THR GLU THR SEQRES 25 A 333 ARG CYS PHE VAL PHE TRP GLU ASP GLN GLU ALA GLU ALA SEQRES 26 A 333 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 333 MSE THR SER THR THR THR THR THR GLU THR LEU GLN GLU SEQRES 2 B 333 ALA VAL PRO PHE VAL ALA PRO PRO SER PRO PRO GLU ASP SEQRES 3 B 333 VAL ASN ASN LYS GLU LEU PRO GLU LYS PRO TYR TYR ASP SEQRES 4 B 333 VAL GLU PHE ASN TYR ARG LEU ASP PRO ARG ASP GLY GLY SEQRES 5 B 333 ASP GLU VAL ILE TRP GLY GLY THR VAL GLY LEU MSE ARG SEQRES 6 B 333 ARG LYS TYR GLU THR ARG THR VAL ARG ILE ASN ASN GLU SEQRES 7 B 333 ARG GLY ASN GLU HIS ASN PHE ASN LEU ASP THR HIS GLY SEQRES 8 B 333 PHE ALA TRP VAL LYS HIS LYS THR SER VAL THR GLU PHE SEQRES 9 B 333 ALA ASP TYR LEU ALA ILE ARG GLN GLY PRO TYR TYR GLY SEQRES 10 B 333 GLU VAL ALA GLU MSE LEU LYS ARG VAL THR GLY ALA THR SEQRES 11 B 333 LYS VAL HIS VAL ILE GLY HIS LEU HIS ARG SER LEU ASN SEQRES 12 B 333 TYR ASN ASP THR THR GLU GLU GLU LYS ASN ALA PRO ASP SEQRES 13 B 333 MSE THR MSE THR LYS GLY GLN THR PRO GLY ARG PHE VAL SEQRES 14 B 333 HIS VAL ASP GLN SER TYR GLN GLY ALA VAL ARG ARG LEU SEQRES 15 B 333 TYR LEU ASP LEU PRO GLN GLU GLU ALA ARG ARG LEU GLU SEQRES 16 B 333 LYS THR ARG TRP ALA ILE ILE ASN VAL TRP ARG PRO VAL SEQRES 17 B 333 ARG LYS VAL THR ASN GLU PRO LEU ALA VAL CYS ASP ALA SEQRES 18 B 333 ARG SER VAL ARG GLU ASP GLU LEU PHE ASN THR LEU HIS SEQRES 19 B 333 LEU VAL PRO MSE ARG TRP PRO ASP ALA ALA PRO GLN GLU SEQRES 20 B 333 ASN GLN MSE TRP ALA VAL ALA PRO PRO LYS THR PRO THR SEQRES 21 B 333 GLN HIS LYS TRP HIS TYR VAL SER GLY MSE THR GLU ASP SEQRES 22 B 333 GLU ALA LEU LEU ILE LYS MSE PHE ASP SER LYS LYS ASP SEQRES 23 B 333 GLY THR ALA ARG ARG VAL PRO HIS SER SER PHE PRO THR SEQRES 24 B 333 PRO ASP ASP PHE GLY GLU PRO ARG ALA SER THR GLU THR SEQRES 25 B 333 ARG CYS PHE VAL PHE TRP GLU ASP GLN GLU ALA GLU ALA SEQRES 26 B 333 LEU GLU HIS HIS HIS HIS HIS HIS HET MSE A 64 8 HET MSE A 122 8 HET MSE A 157 8 HET MSE A 159 8 HET MSE A 238 8 HET MSE A 250 8 HET MSE A 270 8 HET MSE A 280 8 HET MSE B 64 8 HET MSE B 122 8 HET MSE B 157 8 HET MSE B 159 8 HET MSE B 238 8 HET MSE B 250 8 HET MSE B 270 8 HET MSE B 280 8 HET CU A 401 1 HET GOL A 402 6 HET CU B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 CU 2(CU 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *208(H2 O) HELIX 1 AA1 ASP A 47 GLY A 51 5 5 HELIX 2 AA2 VAL A 61 ARG A 66 5 6 HELIX 3 AA3 ASN A 81 PHE A 85 5 5 HELIX 4 AA4 ASP A 106 GLY A 113 1 8 HELIX 5 AA5 PRO A 114 GLY A 128 1 15 HELIX 6 AA6 ASN A 143 GLU A 151 1 9 HELIX 7 AA7 SER A 174 LEU A 186 1 13 HELIX 8 AA8 PRO A 187 GLU A 195 1 9 HELIX 9 AA9 ALA A 221 VAL A 224 5 4 HELIX 10 AB1 ARG A 225 ASP A 227 5 3 HELIX 11 AB2 ASP B 47 GLY B 51 5 5 HELIX 12 AB3 VAL B 61 ARG B 66 5 6 HELIX 13 AB4 ASN B 81 PHE B 85 5 5 HELIX 14 AB5 ASP B 106 GLY B 113 1 8 HELIX 15 AB6 PRO B 114 GLY B 128 1 15 HELIX 16 AB7 ASN B 143 GLU B 151 1 9 HELIX 17 AB8 SER B 174 LEU B 186 1 13 HELIX 18 AB9 PRO B 187 LYS B 196 1 10 HELIX 19 AC1 ALA B 221 VAL B 224 5 4 HELIX 20 AC2 ARG B 225 ASP B 227 5 3 SHEET 1 AA1 5 TYR A 37 TYR A 44 0 SHEET 2 AA1 5 GLU A 69 ASN A 77 -1 O ILE A 75 N TYR A 38 SHEET 3 AA1 5 TRP A 264 TYR A 266 1 O TRP A 264 N ASN A 76 SHEET 4 AA1 5 LEU A 216 CYS A 219 -1 N VAL A 218 O HIS A 265 SHEET 5 AA1 5 HIS A 294 SER A 296 -1 O SER A 295 N ALA A 217 SHEET 1 AA2 4 VAL A 55 TRP A 57 0 SHEET 2 AA2 4 LEU A 229 VAL A 236 1 O LEU A 235 N ILE A 56 SHEET 3 AA2 4 GLN A 246 VAL A 253 -1 O ASN A 248 N HIS A 234 SHEET 4 AA2 4 HIS A 170 VAL A 171 -1 N VAL A 171 O TRP A 251 SHEET 1 AA3 5 PHE A 92 LYS A 96 0 SHEET 2 AA3 5 GLU A 274 ASP A 282 -1 O ALA A 275 N VAL A 95 SHEET 3 AA3 5 THR A 197 PRO A 207 -1 N TRP A 205 O LEU A 276 SHEET 4 AA3 5 SER A 309 GLU A 322 -1 O VAL A 316 N ALA A 200 SHEET 5 AA3 5 LYS A 131 ARG A 140 -1 N HIS A 133 O PHE A 315 SHEET 1 AA4 5 TYR B 37 TYR B 44 0 SHEET 2 AA4 5 GLU B 69 ASN B 77 -1 O ARG B 71 N PHE B 42 SHEET 3 AA4 5 TRP B 264 TYR B 266 1 O TRP B 264 N ASN B 76 SHEET 4 AA4 5 LEU B 216 CYS B 219 -1 N VAL B 218 O HIS B 265 SHEET 5 AA4 5 HIS B 294 SER B 296 -1 O SER B 295 N ALA B 217 SHEET 1 AA5 4 VAL B 55 TRP B 57 0 SHEET 2 AA5 4 LEU B 229 VAL B 236 1 O LEU B 233 N ILE B 56 SHEET 3 AA5 4 GLN B 246 VAL B 253 -1 O ALA B 252 N PHE B 230 SHEET 4 AA5 4 HIS B 170 VAL B 171 -1 N VAL B 171 O TRP B 251 SHEET 1 AA6 5 PHE B 92 LYS B 96 0 SHEET 2 AA6 5 GLU B 274 ASP B 282 -1 O LEU B 277 N ALA B 93 SHEET 3 AA6 5 ARG B 198 PRO B 207 -1 N ASN B 203 O ILE B 278 SHEET 4 AA6 5 SER B 309 TRP B 318 -1 O VAL B 316 N ALA B 200 SHEET 5 AA6 5 LYS B 131 ARG B 140 -1 N HIS B 133 O PHE B 315 LINK C LEU A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N ARG A 65 1555 1555 1.33 LINK C GLU A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N LEU A 123 1555 1555 1.34 LINK C ASP A 156 N MSE A 157 1555 1555 1.35 LINK C MSE A 157 N THR A 158 1555 1555 1.35 LINK C THR A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N THR A 160 1555 1555 1.34 LINK C PRO A 237 N MSE A 238 1555 1555 1.34 LINK C MSE A 238 N ARG A 239 1555 1555 1.34 LINK C GLN A 249 N MSE A 250 1555 1555 1.34 LINK C MSE A 250 N TRP A 251 1555 1555 1.34 LINK C GLY A 269 N MSE A 270 1555 1555 1.34 LINK C MSE A 270 N THR A 271 1555 1555 1.34 LINK C LYS A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N PHE A 281 1555 1555 1.33 LINK C LEU B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N ARG B 65 1555 1555 1.35 LINK C GLU B 121 N MSE B 122 1555 1555 1.34 LINK C MSE B 122 N LEU B 123 1555 1555 1.33 LINK C ASP B 156 N MSE B 157 1555 1555 1.34 LINK C MSE B 157 N THR B 158 1555 1555 1.33 LINK C THR B 158 N MSE B 159 1555 1555 1.34 LINK C MSE B 159 N THR B 160 1555 1555 1.34 LINK C PRO B 237 N MSE B 238 1555 1555 1.33 LINK C MSE B 238 N ARG B 239 1555 1555 1.32 LINK C GLN B 249 N MSE B 250 1555 1555 1.33 LINK C MSE B 250 N TRP B 251 1555 1555 1.34 LINK C GLY B 269 N MSE B 270 1555 1555 1.33 LINK C MSE B 270 N THR B 271 1555 1555 1.34 LINK C LYS B 279 N MSE B 280 1555 1555 1.35 LINK C MSE B 280 N PHE B 281 1555 1555 1.33 LINK NE2 HIS A 170 CU CU A 401 1555 1555 2.25 LINK OD1 ASP A 172 CU CU A 401 1555 1555 2.28 LINK NE2 HIS A 294 CU CU A 401 1555 1555 1.95 LINK CU CU A 401 O HOH A 511 1555 1555 2.31 LINK NE2 HIS B 170 CU CU B 401 1555 1555 2.08 LINK OD1 ASP B 172 CU CU B 401 1555 1555 2.11 LINK NE2 HIS B 294 CU CU B 401 1555 1555 2.19 LINK CU CU B 401 O HOH B 562 1555 1555 2.32 LINK CU CU B 401 O HOH B 583 1555 1555 2.25 CISPEP 1 TRP A 240 PRO A 241 0 5.45 CISPEP 2 TRP B 240 PRO B 241 0 0.97 CRYST1 42.427 147.916 54.163 90.00 105.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023570 0.000000 0.006721 0.00000 SCALE2 0.000000 0.006761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019199 0.00000