HEADER IRON-BINDINB PROTEIN 19-MAY-21 7EV0 TITLE CRYSTAL STRUCTURE OF PEPSIN CLEAVED C-TERMINAL HALF OF LACTOFERRIN AT TITLE 2 2.7A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOTRANSFERRIN; COMPND 3 CHAIN: A, P; COMPND 4 SYNONYM: LACTOFERRIN; COMPND 5 EC: 3.4.21.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS PEPSIN CLEAVED C-TERMINAL LACTOFERRIN, IRON-BINDINB PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SINGH,M.I.AHMAD,A.MAURYA,P.SHARMA,S.SHARMA,T.P.SINGH REVDAT 2 29-NOV-23 7EV0 1 REMARK REVDAT 1 02-JUN-21 7EV0 0 JRNL AUTH J.SINGH,M.I.AHMAD,A.MAURYA,P.SHARMA,S.SHARMA,T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF PEPSIN CLEAVED C-TERMINAL HALF OF JRNL TITL 2 LACTOFERRIN AT 2.7A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 28469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.023 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1996 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3900 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5314 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 219 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03800 REMARK 3 B22 (A**2) : -0.04900 REMARK 3 B33 (A**2) : 0.03100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.740 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.397 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.517 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5677 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5205 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7720 ; 1.605 ; 1.701 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12063 ; 1.160 ; 1.634 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 7.351 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;37.325 ;23.561 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 914 ;20.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.082 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6337 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1229 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1372 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 72 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2679 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2782 ; 5.990 ; 8.503 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2781 ; 5.991 ; 8.502 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3474 ; 9.494 ;12.738 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3475 ; 9.493 ;12.739 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2895 ; 5.430 ; 9.198 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2895 ; 5.429 ; 9.198 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4246 ; 8.845 ;13.635 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4247 ; 8.844 ;13.638 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7EV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9655 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 67.115 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5HBC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM ACETATE, 20% PEG 3350, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.75400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.75400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, Z, B, C, E, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 823 O HOH A 829 2.04 REMARK 500 O ASP A 390 OG SER A 599 2.04 REMARK 500 O PRO P 593 O HOH P 801 2.10 REMARK 500 O ILE P 399 O HOH P 802 2.12 REMARK 500 N ASP P 395 O HOH P 803 2.15 REMARK 500 O LEU P 473 O ASN P 476 2.16 REMARK 500 O ASN A 594 OH TYR A 660 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 444 OD1 ASN A 621 4546 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 444 CD GLU A 444 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 410 -52.27 -133.61 REMARK 500 ASP A 462 -6.02 79.33 REMARK 500 TRP A 467 -69.41 -135.92 REMARK 500 ALA A 482 57.13 -95.18 REMARK 500 ALA A 492 68.45 -150.25 REMARK 500 LYS A 498 49.55 -100.81 REMARK 500 ASP A 508 -122.51 -95.63 REMARK 500 VAL A 543 -163.88 -120.00 REMARK 500 ASN A 621 48.28 -89.72 REMARK 500 THR A 636 -113.57 -77.47 REMARK 500 ASN A 638 63.48 36.79 REMARK 500 LEU A 640 -49.02 65.03 REMARK 500 LEU A 651 -158.20 -101.41 REMARK 500 ARG A 654 68.95 23.95 REMARK 500 LYS P 416 108.72 -54.18 REMARK 500 LYS P 419 -134.34 -162.09 REMARK 500 HIS P 420 94.77 -69.33 REMARK 500 ASN P 443 92.20 -68.93 REMARK 500 LEU P 446 75.57 -108.99 REMARK 500 ALA P 460 167.16 176.85 REMARK 500 ASP P 462 -16.74 75.84 REMARK 500 THR P 464 -72.55 -65.90 REMARK 500 TRP P 467 -54.99 -130.97 REMARK 500 GLN P 477 -52.15 132.72 REMARK 500 ASP P 508 -132.33 -108.99 REMARK 500 PHE P 542 72.80 -113.44 REMARK 500 VAL P 543 -160.86 -119.21 REMARK 500 GLU P 583 45.88 -95.75 REMARK 500 HIS P 595 98.55 -38.13 REMARK 500 ASN P 621 55.92 -94.72 REMARK 500 ASN P 624 30.24 -94.38 REMARK 500 GLU P 635 67.91 74.92 REMARK 500 THR P 636 26.83 40.21 REMARK 500 ASN P 638 44.23 38.51 REMARK 500 LEU P 640 -59.39 58.94 REMARK 500 ARG P 654 73.94 54.75 REMARK 500 THR P 688 33.29 -148.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 490 CYS A 491 147.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 395 OD1 REMARK 620 2 TYR A 433 OH 72.8 REMARK 620 3 TYR A 526 OH 167.0 96.9 REMARK 620 4 HIS A 595 NE2 85.6 112.0 91.2 REMARK 620 5 CO3 A 702 O1 100.8 150.6 92.0 95.7 REMARK 620 6 CO3 A 702 O2 86.0 84.5 101.2 158.1 66.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE P 701 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 395 OD1 REMARK 620 2 TYR P 433 OH 69.8 REMARK 620 3 TYR P 526 OH 147.6 85.9 REMARK 620 4 HIS P 595 NE2 85.2 105.9 81.0 REMARK 620 5 CO3 P 702 O1 117.3 150.7 94.4 103.1 REMARK 620 6 CO3 P 702 O2 92.5 83.9 106.3 168.5 67.9 REMARK 620 N 1 2 3 4 5 DBREF 7EV0 A 342 689 UNP P24627 TRFL_BOVIN 361 708 DBREF 7EV0 P 342 689 UNP P24627 TRFL_BOVIN 361 708 SEQRES 1 A 348 TYR THR ARG VAL VAL TRP CYS ALA VAL GLY PRO GLU GLU SEQRES 2 A 348 GLN LYS LYS CYS GLN GLN TRP SER GLN GLN SER GLY GLN SEQRES 3 A 348 ASN VAL THR CYS ALA THR ALA SER THR THR ASP ASP CYS SEQRES 4 A 348 ILE VAL LEU VAL LEU LYS GLY GLU ALA ASP ALA LEU ASN SEQRES 5 A 348 LEU ASP GLY GLY TYR ILE TYR THR ALA GLY LYS CYS GLY SEQRES 6 A 348 LEU VAL PRO VAL LEU ALA GLU ASN ARG LYS SER SER LYS SEQRES 7 A 348 HIS SER SER LEU ASP CYS VAL LEU ARG PRO THR GLU GLY SEQRES 8 A 348 TYR LEU ALA VAL ALA VAL VAL LYS LYS ALA ASN GLU GLY SEQRES 9 A 348 LEU THR TRP ASN SER LEU LYS ASP LYS LYS SER CYS HIS SEQRES 10 A 348 THR ALA VAL ASP ARG THR ALA GLY TRP ASN ILE PRO MET SEQRES 11 A 348 GLY LEU ILE VAL ASN GLN THR GLY SER CYS ALA PHE ASP SEQRES 12 A 348 GLU PHE PHE SER GLN SER CYS ALA PRO GLY ALA ASP PRO SEQRES 13 A 348 LYS SER ARG LEU CYS ALA LEU CYS ALA GLY ASP ASP GLN SEQRES 14 A 348 GLY LEU ASP LYS CYS VAL PRO ASN SER LYS GLU LYS TYR SEQRES 15 A 348 TYR GLY TYR THR GLY ALA PHE ARG CYS LEU ALA GLU ASP SEQRES 16 A 348 VAL GLY ASP VAL ALA PHE VAL LYS ASN ASP THR VAL TRP SEQRES 17 A 348 GLU ASN THR ASN GLY GLU SER THR ALA ASP TRP ALA LYS SEQRES 18 A 348 ASN LEU ASN ARG GLU ASP PHE ARG LEU LEU CYS LEU ASP SEQRES 19 A 348 GLY THR ARG LYS PRO VAL THR GLU ALA GLN SER CYS HIS SEQRES 20 A 348 LEU ALA VAL ALA PRO ASN HIS ALA VAL VAL SER ARG SER SEQRES 21 A 348 ASP ARG ALA ALA HIS VAL LYS GLN VAL LEU LEU HIS GLN SEQRES 22 A 348 GLN ALA LEU PHE GLY LYS ASN GLY LYS ASN CYS PRO ASP SEQRES 23 A 348 LYS PHE CYS LEU PHE LYS SER GLU THR LYS ASN LEU LEU SEQRES 24 A 348 PHE ASN ASP ASN THR GLU CYS LEU ALA LYS LEU GLY GLY SEQRES 25 A 348 ARG PRO THR TYR GLU GLU TYR LEU GLY THR GLU TYR VAL SEQRES 26 A 348 THR ALA ILE ALA ASN LEU LYS LYS CYS SER THR SER PRO SEQRES 27 A 348 LEU LEU GLU ALA CYS ALA PHE LEU THR ARG SEQRES 1 P 348 TYR THR ARG VAL VAL TRP CYS ALA VAL GLY PRO GLU GLU SEQRES 2 P 348 GLN LYS LYS CYS GLN GLN TRP SER GLN GLN SER GLY GLN SEQRES 3 P 348 ASN VAL THR CYS ALA THR ALA SER THR THR ASP ASP CYS SEQRES 4 P 348 ILE VAL LEU VAL LEU LYS GLY GLU ALA ASP ALA LEU ASN SEQRES 5 P 348 LEU ASP GLY GLY TYR ILE TYR THR ALA GLY LYS CYS GLY SEQRES 6 P 348 LEU VAL PRO VAL LEU ALA GLU ASN ARG LYS SER SER LYS SEQRES 7 P 348 HIS SER SER LEU ASP CYS VAL LEU ARG PRO THR GLU GLY SEQRES 8 P 348 TYR LEU ALA VAL ALA VAL VAL LYS LYS ALA ASN GLU GLY SEQRES 9 P 348 LEU THR TRP ASN SER LEU LYS ASP LYS LYS SER CYS HIS SEQRES 10 P 348 THR ALA VAL ASP ARG THR ALA GLY TRP ASN ILE PRO MET SEQRES 11 P 348 GLY LEU ILE VAL ASN GLN THR GLY SER CYS ALA PHE ASP SEQRES 12 P 348 GLU PHE PHE SER GLN SER CYS ALA PRO GLY ALA ASP PRO SEQRES 13 P 348 LYS SER ARG LEU CYS ALA LEU CYS ALA GLY ASP ASP GLN SEQRES 14 P 348 GLY LEU ASP LYS CYS VAL PRO ASN SER LYS GLU LYS TYR SEQRES 15 P 348 TYR GLY TYR THR GLY ALA PHE ARG CYS LEU ALA GLU ASP SEQRES 16 P 348 VAL GLY ASP VAL ALA PHE VAL LYS ASN ASP THR VAL TRP SEQRES 17 P 348 GLU ASN THR ASN GLY GLU SER THR ALA ASP TRP ALA LYS SEQRES 18 P 348 ASN LEU ASN ARG GLU ASP PHE ARG LEU LEU CYS LEU ASP SEQRES 19 P 348 GLY THR ARG LYS PRO VAL THR GLU ALA GLN SER CYS HIS SEQRES 20 P 348 LEU ALA VAL ALA PRO ASN HIS ALA VAL VAL SER ARG SER SEQRES 21 P 348 ASP ARG ALA ALA HIS VAL LYS GLN VAL LEU LEU HIS GLN SEQRES 22 P 348 GLN ALA LEU PHE GLY LYS ASN GLY LYS ASN CYS PRO ASP SEQRES 23 P 348 LYS PHE CYS LEU PHE LYS SER GLU THR LYS ASN LEU LEU SEQRES 24 P 348 PHE ASN ASP ASN THR GLU CYS LEU ALA LYS LEU GLY GLY SEQRES 25 P 348 ARG PRO THR TYR GLU GLU TYR LEU GLY THR GLU TYR VAL SEQRES 26 P 348 THR ALA ILE ALA ASN LEU LYS LYS CYS SER THR SER PRO SEQRES 27 P 348 LEU LEU GLU ALA CYS ALA PHE LEU THR ARG HET NAG Z 1 14 HET NAG Z 2 14 HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET FE A 701 1 HET CO3 A 702 4 HET NAG A 703 14 HET FE P 701 1 HET CO3 P 702 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FE FE (III) ION HETNAM CO3 CARBONATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 4 BMA 3(C6 H12 O6) FORMUL 5 MAN 2(C6 H12 O6) FORMUL 8 FE 2(FE 3+) FORMUL 9 CO3 2(C O3 2-) FORMUL 13 HOH *87(H2 O) HELIX 1 AA1 GLY A 351 SER A 365 1 15 HELIX 2 AA2 THR A 376 GLY A 387 1 12 HELIX 3 AA3 ASP A 395 CYS A 405 1 11 HELIX 4 AA4 THR A 447 LEU A 451 5 5 HELIX 5 AA5 ILE A 469 GLY A 479 1 11 HELIX 6 AA6 ALA A 482 PHE A 487 1 6 HELIX 7 AA7 TYR A 524 GLU A 535 1 12 HELIX 8 AA8 ASN A 545 GLU A 550 1 6 HELIX 9 AA9 ALA A 558 ASN A 563 1 6 HELIX 10 AB1 ASN A 565 GLU A 567 5 3 HELIX 11 AB2 ARG A 603 GLY A 619 1 17 HELIX 12 AB3 THR A 656 GLY A 662 1 7 HELIX 13 AB4 GLY A 662 LYS A 674 1 13 HELIX 14 AB5 SER A 678 ALA A 683 1 6 HELIX 15 AB6 CYS A 684 ARG A 689 1 6 HELIX 16 AB7 PRO P 352 GLY P 366 1 15 HELIX 17 AB8 THR P 376 GLY P 387 1 12 HELIX 18 AB9 ASP P 395 CYS P 405 1 11 HELIX 19 AC1 TRP P 467 ASN P 476 1 10 HELIX 20 AC2 ALA P 482 PHE P 486 5 5 HELIX 21 AC3 TYR P 524 GLU P 535 1 12 HELIX 22 AC4 ASN P 545 ASN P 551 1 7 HELIX 23 AC5 ALA P 558 LYS P 562 5 5 HELIX 24 AC6 ASN P 565 ASP P 568 5 4 HELIX 25 AC7 THR P 582 ALA P 584 5 3 HELIX 26 AC8 ARG P 603 GLY P 619 1 17 HELIX 27 AC9 THR P 656 GLY P 662 1 7 HELIX 28 AD1 GLY P 662 LYS P 673 1 12 HELIX 29 AD2 LYS P 674 SER P 676 5 3 HELIX 30 AD3 SER P 678 LEU P 687 1 10 SHEET 1 AA1 2 VAL A 345 VAL A 350 0 SHEET 2 AA1 2 VAL A 369 ALA A 374 1 O THR A 370 N TRP A 347 SHEET 1 AA2 4 ALA A 391 LEU A 394 0 SHEET 2 AA2 4 ALA A 596 SER A 599 -1 O ALA A 596 N LEU A 394 SHEET 3 AA2 4 VAL A 408 ASN A 414 -1 N VAL A 408 O SER A 599 SHEET 4 AA2 4 CYS A 647 ALA A 649 -1 O ALA A 649 N ALA A 412 SHEET 1 AA3 5 SER A 490 CYS A 491 0 SHEET 2 AA3 5 SER A 456 HIS A 458 1 N SER A 456 O CYS A 491 SHEET 3 AA3 5 VAL A 540 LYS A 544 1 O PHE A 542 N CYS A 457 SHEET 4 AA3 5 TYR A 433 LYS A 440 -1 N VAL A 436 O VAL A 543 SHEET 5 AA3 5 PHE A 569 LEU A 572 -1 O ARG A 570 N VAL A 439 SHEET 1 AA4 5 SER A 490 CYS A 491 0 SHEET 2 AA4 5 SER A 456 HIS A 458 1 N SER A 456 O CYS A 491 SHEET 3 AA4 5 VAL A 540 LYS A 544 1 O PHE A 542 N CYS A 457 SHEET 4 AA4 5 TYR A 433 LYS A 440 -1 N VAL A 436 O VAL A 543 SHEET 5 AA4 5 ALA A 590 ALA A 592 -1 O ALA A 590 N ALA A 435 SHEET 1 AA5 2 VAL P 345 VAL P 350 0 SHEET 2 AA5 2 VAL P 369 ALA P 374 1 O THR P 370 N TRP P 347 SHEET 1 AA6 4 LEU P 392 LEU P 394 0 SHEET 2 AA6 4 ALA P 596 SER P 599 -1 O ALA P 596 N LEU P 394 SHEET 3 AA6 4 VAL P 408 ASN P 414 -1 N LEU P 411 O VAL P 597 SHEET 4 AA6 4 CYS P 647 ALA P 649 -1 O ALA P 649 N ALA P 412 SHEET 1 AA7 6 GLN P 489 CYS P 491 0 SHEET 2 AA7 6 LYS P 455 HIS P 458 1 N HIS P 458 O CYS P 491 SHEET 3 AA7 6 VAL P 540 LYS P 544 1 O PHE P 542 N CYS P 457 SHEET 4 AA7 6 LEU P 434 VAL P 439 -1 N VAL P 436 O VAL P 543 SHEET 5 AA7 6 ARG P 570 LEU P 572 -1 O ARG P 570 N VAL P 439 SHEET 6 AA7 6 ARG P 578 PRO P 580 -1 O LYS P 579 N LEU P 571 SHEET 1 AA8 5 GLN P 489 CYS P 491 0 SHEET 2 AA8 5 LYS P 455 HIS P 458 1 N HIS P 458 O CYS P 491 SHEET 3 AA8 5 VAL P 540 LYS P 544 1 O PHE P 542 N CYS P 457 SHEET 4 AA8 5 LEU P 434 VAL P 439 -1 N VAL P 436 O VAL P 543 SHEET 5 AA8 5 ALA P 590 VAL P 591 -1 O ALA P 590 N ALA P 435 SSBOND 1 CYS A 348 CYS A 380 1555 1555 2.10 SSBOND 2 CYS A 358 CYS A 371 1555 1555 2.06 SSBOND 3 CYS A 405 CYS A 684 1555 1555 2.09 SSBOND 4 CYS A 425 CYS A 647 1555 1555 2.04 SSBOND 5 CYS A 457 CYS A 532 1555 1555 2.04 SSBOND 6 CYS A 481 CYS A 675 1555 1555 2.06 SSBOND 7 CYS A 491 CYS A 505 1555 1555 2.03 SSBOND 8 CYS A 502 CYS A 515 1555 1555 2.03 SSBOND 9 CYS A 573 CYS A 587 1555 1555 2.05 SSBOND 10 CYS A 625 CYS A 630 1555 1555 2.05 SSBOND 11 CYS P 348 CYS P 380 1555 1555 2.06 SSBOND 12 CYS P 358 CYS P 371 1555 1555 2.06 SSBOND 13 CYS P 405 CYS P 684 1555 1555 2.02 SSBOND 14 CYS P 425 CYS P 647 1555 1555 2.05 SSBOND 15 CYS P 457 CYS P 532 1555 1555 2.05 SSBOND 16 CYS P 481 CYS P 675 1555 1555 2.05 SSBOND 17 CYS P 491 CYS P 505 1555 1555 2.07 SSBOND 18 CYS P 502 CYS P 515 1555 1555 2.02 SSBOND 19 CYS P 573 CYS P 587 1555 1555 2.05 SSBOND 20 CYS P 625 CYS P 630 1555 1555 2.05 LINK ND2 ASN A 368 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 476 C1 NAG A 703 1555 1555 1.45 LINK ND2 ASN A 545 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN P 368 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN P 476 C1 NAG Z 1 1555 1555 1.43 LINK ND2 ASN P 545 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG Z 1 C1 NAG Z 2 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.47 LINK O4 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O4 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK OD1 ASP A 395 FE FE A 701 1555 1555 2.09 LINK OH TYR A 433 FE FE A 701 1555 1555 2.07 LINK OH TYR A 526 FE FE A 701 1555 1555 2.02 LINK NE2 HIS A 595 FE FE A 701 1555 1555 2.40 LINK FE FE A 701 O1 CO3 A 702 1555 1555 2.06 LINK FE FE A 701 O2 CO3 A 702 1555 1555 2.06 LINK OD1 ASP P 395 FE FE P 701 1555 1555 2.06 LINK OH TYR P 433 FE FE P 701 1555 1555 2.07 LINK OH TYR P 526 FE FE P 701 1555 1555 2.06 LINK NE2 HIS P 595 FE FE P 701 1555 1555 2.19 LINK FE FE P 701 O1 CO3 P 702 1555 1555 2.03 LINK FE FE P 701 O2 CO3 P 702 1555 1555 2.04 CISPEP 1 CYS A 625 PRO A 626 0 4.82 CISPEP 2 CYS P 625 PRO P 626 0 -0.90 CRYST1 153.508 81.760 111.794 90.00 130.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006514 0.000000 0.005529 0.00000 SCALE2 0.000000 0.012231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011732 0.00000