HEADER CELL ADHESION 19-MAY-21 7EV1 TITLE CRYSTAL STRUCTURE OF LI-CADHERIN EC1-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-17; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LI-CADHERIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-SUMO KEYWDS LI-CADHERIN, DIMERIZATION, MD SIMULATIONS, SAXS, CELL-ADHESION, KEYWDS 2 ANALYTICAL ULTRACENTRIFUGATION, PROTEIN CHEMISTRY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,A.YUI,K.TSUMOTO REVDAT 3 29-NOV-23 7EV1 1 REMARK REVDAT 2 05-JAN-22 7EV1 1 JRNL REVDAT 1 16-JUN-21 7EV1 0 JRNL AUTH A.YUI,J.M.M.CAAVEIRO,D.KURODA,M.NAKAKIDO,S.NAGATOISHI, JRNL AUTH 2 S.GODA,T.MARUNO,S.UCHIYAMA,K.TSUMOTO JRNL TITL MECHANISM OF DIMERIZATION AND STRUCTURAL FEATURES OF HUMAN JRNL TITL 2 LI-CADHERIN. JRNL REF J.BIOL.CHEM. V. 297 01054 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34364873 JRNL DOI 10.1016/J.JBC.2021.101054 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 91034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 632 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.93000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.767 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3398 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3082 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4642 ; 1.542 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7221 ; 1.411 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 7.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;34.072 ;24.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 573 ;12.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.191 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3857 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6480 ; 1.702 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.0 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 41.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4ZMY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 30% 2 REMARK 280 -PROPANOL, TRIS PH8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.84000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 221 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 98.32 -162.52 REMARK 500 ILE B 69 -56.65 -128.27 REMARK 500 ASN B 200 111.01 -166.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 727 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B 696 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 697 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 40 OE2 REMARK 620 2 GLU A 87 OE1 85.5 REMARK 620 3 GLU A 87 OE2 107.2 50.5 REMARK 620 4 ASP A 118 OD1 82.0 118.9 77.2 REMARK 620 5 ILE A 119 O 85.3 154.9 154.4 82.7 REMARK 620 6 ASP A 121 OD1 90.2 75.8 120.3 162.4 81.0 REMARK 620 7 ASP A 154 OD1 165.5 101.6 86.9 105.0 83.1 79.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 40 OE1 REMARK 620 2 ASP A 85 OD1 85.9 REMARK 620 3 GLU A 87 OE1 85.2 89.2 REMARK 620 4 ASP A 121 OD2 94.5 161.8 109.0 REMARK 620 5 HOH A 614 O 104.3 81.0 165.8 81.2 REMARK 620 6 HOH A 617 O 166.3 96.9 81.5 87.0 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 120 OD1 REMARK 620 2 ASN A 122 O 95.3 REMARK 620 3 ASP A 152 OD1 157.7 92.5 REMARK 620 4 ASP A 152 OD2 148.6 89.6 52.0 REMARK 620 5 ASP A 154 OD2 71.7 78.1 130.4 79.0 REMARK 620 6 ASN A 160 O 84.8 172.6 90.1 86.5 94.9 REMARK 620 7 ASP A 215 OD2 75.6 93.8 83.1 135.1 145.3 93.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 577 O REMARK 620 2 HOH A 693 O 131.3 REMARK 620 3 HOH B 487 O 97.1 115.4 REMARK 620 4 HOH B 617 O 92.3 120.3 91.5 REMARK 620 5 HOH B 684 O 135.0 63.8 51.6 116.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 40 OE2 REMARK 620 2 GLU B 87 OE1 87.2 REMARK 620 3 GLU B 87 OE2 107.5 51.7 REMARK 620 4 ASP B 118 OD1 84.3 122.3 77.2 REMARK 620 5 ILE B 119 O 85.6 153.1 154.5 82.7 REMARK 620 6 ASP B 121 OD1 87.7 74.1 121.5 161.2 79.8 REMARK 620 7 ASP B 154 OD1 164.1 96.9 86.9 106.0 83.8 78.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 40 OE1 REMARK 620 2 ASP B 85 OD1 86.9 REMARK 620 3 GLU B 87 OE1 85.0 90.7 REMARK 620 4 ASP B 121 OD1 93.1 157.2 66.6 REMARK 620 5 ASP B 121 OD2 93.7 158.1 111.1 44.7 REMARK 620 6 HOH B 583 O 101.4 80.3 168.6 121.8 78.1 REMARK 620 7 HOH B 607 O 169.5 92.5 84.5 83.4 90.8 88.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 120 OD1 REMARK 620 2 ASN B 122 O 95.4 REMARK 620 3 ASP B 152 OD1 158.1 92.1 REMARK 620 4 ASP B 152 OD2 147.3 92.1 52.5 REMARK 620 5 ASP B 154 OD2 71.8 81.4 129.8 77.9 REMARK 620 6 ASN B 160 O 86.2 175.0 88.2 84.1 94.6 REMARK 620 7 ASP B 215 OD2 76.0 91.7 83.3 135.7 146.1 93.3 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7CYM RELATED DB: PDB REMARK 900 SAME PROTEIN CONTAINING MORE DOMAINS DBREF 7EV1 A 29 236 UNP Q12864 CAD17_HUMAN 29 236 DBREF 7EV1 B 29 236 UNP Q12864 CAD17_HUMAN 29 236 SEQRES 1 A 208 GLY PRO LEU LYS PRO MET THR PHE SER ILE TYR GLU GLY SEQRES 2 A 208 GLN GLU PRO SER GLN ILE ILE PHE GLN PHE LYS ALA ASN SEQRES 3 A 208 PRO PRO ALA VAL THR PHE GLU LEU THR GLY GLU THR ASP SEQRES 4 A 208 ASN ILE PHE VAL ILE GLU ARG GLU GLY LEU LEU TYR TYR SEQRES 5 A 208 ASN ARG ALA LEU ASP ARG GLU THR ARG SER THR HIS ASN SEQRES 6 A 208 LEU GLN VAL ALA ALA LEU ASP ALA ASN GLY ILE ILE VAL SEQRES 7 A 208 GLU GLY PRO VAL PRO ILE THR ILE LYS VAL LYS ASP ILE SEQRES 8 A 208 ASN ASP ASN ARG PRO THR PHE LEU GLN SER LYS TYR GLU SEQRES 9 A 208 GLY SER VAL ARG GLN ASN SER ARG PRO GLY LYS PRO PHE SEQRES 10 A 208 LEU TYR VAL ASN ALA THR ASP LEU ASP ASP PRO ALA THR SEQRES 11 A 208 PRO ASN GLY GLN LEU TYR TYR GLN ILE VAL ILE GLN LEU SEQRES 12 A 208 PRO MET ILE ASN ASN VAL MET TYR PHE GLN ILE ASN ASN SEQRES 13 A 208 LYS THR GLY ALA ILE SER LEU THR ARG GLU GLY SER GLN SEQRES 14 A 208 GLU LEU ASN PRO ALA LYS ASN PRO SER TYR ASN LEU VAL SEQRES 15 A 208 ILE SER VAL LYS ASP MET GLY GLY GLN SER GLU ASN SER SEQRES 16 A 208 PHE SER ASP THR THR SER VAL ASP ILE ILE VAL THR GLU SEQRES 1 B 208 GLY PRO LEU LYS PRO MET THR PHE SER ILE TYR GLU GLY SEQRES 2 B 208 GLN GLU PRO SER GLN ILE ILE PHE GLN PHE LYS ALA ASN SEQRES 3 B 208 PRO PRO ALA VAL THR PHE GLU LEU THR GLY GLU THR ASP SEQRES 4 B 208 ASN ILE PHE VAL ILE GLU ARG GLU GLY LEU LEU TYR TYR SEQRES 5 B 208 ASN ARG ALA LEU ASP ARG GLU THR ARG SER THR HIS ASN SEQRES 6 B 208 LEU GLN VAL ALA ALA LEU ASP ALA ASN GLY ILE ILE VAL SEQRES 7 B 208 GLU GLY PRO VAL PRO ILE THR ILE LYS VAL LYS ASP ILE SEQRES 8 B 208 ASN ASP ASN ARG PRO THR PHE LEU GLN SER LYS TYR GLU SEQRES 9 B 208 GLY SER VAL ARG GLN ASN SER ARG PRO GLY LYS PRO PHE SEQRES 10 B 208 LEU TYR VAL ASN ALA THR ASP LEU ASP ASP PRO ALA THR SEQRES 11 B 208 PRO ASN GLY GLN LEU TYR TYR GLN ILE VAL ILE GLN LEU SEQRES 12 B 208 PRO MET ILE ASN ASN VAL MET TYR PHE GLN ILE ASN ASN SEQRES 13 B 208 LYS THR GLY ALA ILE SER LEU THR ARG GLU GLY SER GLN SEQRES 14 B 208 GLU LEU ASN PRO ALA LYS ASN PRO SER TYR ASN LEU VAL SEQRES 15 B 208 ILE SER VAL LYS ASP MET GLY GLY GLN SER GLU ASN SER SEQRES 16 B 208 PHE SER ASP THR THR SER VAL ASP ILE ILE VAL THR GLU HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET ACT A 304 4 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET NA B 304 1 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 10 NA NA 1+ FORMUL 11 HOH *632(H2 O) HELIX 1 AA1 THR A 158 GLN A 162 5 5 HELIX 2 AA2 THR A 192 LEU A 199 1 8 HELIX 3 AA3 MET A 216 GLN A 219 5 4 HELIX 4 AA4 THR B 158 GLN B 162 5 5 HELIX 5 AA5 THR B 192 LEU B 199 1 8 HELIX 6 AA6 MET B 216 GLN B 219 5 4 SHEET 1 AA1 4 MET A 34 TYR A 39 0 SHEET 2 AA1 4 ILE A 105 LYS A 117 1 O THR A 113 N MET A 34 SHEET 3 AA1 4 THR A 91 LEU A 99 -1 N ALA A 98 O VAL A 106 SHEET 4 AA1 4 THR A 59 GLY A 64 -1 N THR A 59 O LEU A 99 SHEET 1 AA2 3 PHE A 49 GLN A 50 0 SHEET 2 AA2 3 LEU A 77 TYR A 80 -1 O LEU A 78 N PHE A 49 SHEET 3 AA2 3 PHE A 70 ILE A 72 -1 N VAL A 71 O TYR A 79 SHEET 1 AA3 2 THR A 125 PHE A 126 0 SHEET 2 AA3 2 ALA A 150 THR A 151 -1 O THR A 151 N THR A 125 SHEET 1 AA4 4 LYS A 130 ARG A 136 0 SHEET 2 AA4 4 SER A 225 THR A 235 1 O ASP A 231 N GLY A 133 SHEET 3 AA4 4 SER A 206 LYS A 214 -1 N TYR A 207 O ILE A 232 SHEET 4 AA4 4 TYR A 164 LEU A 171 -1 N LEU A 171 O ASN A 208 SHEET 1 AA5 3 LEU A 146 TYR A 147 0 SHEET 2 AA5 3 ALA A 188 LEU A 191 -1 O ILE A 189 N LEU A 146 SHEET 3 AA5 3 PHE A 180 ILE A 182 -1 N GLN A 181 O SER A 190 SHEET 1 AA6 4 MET B 34 TYR B 39 0 SHEET 2 AA6 4 ILE B 105 LYS B 117 1 O LYS B 115 N PHE B 36 SHEET 3 AA6 4 THR B 91 LEU B 99 -1 N LEU B 94 O ILE B 112 SHEET 4 AA6 4 THR B 59 GLY B 64 -1 N THR B 59 O LEU B 99 SHEET 1 AA7 3 PHE B 49 GLN B 50 0 SHEET 2 AA7 3 LEU B 77 TYR B 80 -1 O LEU B 78 N PHE B 49 SHEET 3 AA7 3 PHE B 70 ILE B 72 -1 N VAL B 71 O TYR B 79 SHEET 1 AA8 2 THR B 125 PHE B 126 0 SHEET 2 AA8 2 ALA B 150 THR B 151 -1 O THR B 151 N THR B 125 SHEET 1 AA9 4 LYS B 130 ARG B 136 0 SHEET 2 AA9 4 SER B 225 THR B 235 1 O ASP B 231 N GLY B 133 SHEET 3 AA9 4 SER B 206 LYS B 214 -1 N TYR B 207 O ILE B 232 SHEET 4 AA9 4 TYR B 164 LEU B 171 -1 N VAL B 168 O VAL B 210 SHEET 1 AB1 3 LEU B 146 TYR B 147 0 SHEET 2 AB1 3 ALA B 188 LEU B 191 -1 O ILE B 189 N LEU B 146 SHEET 3 AB1 3 PHE B 180 ILE B 182 -1 N GLN B 181 O SER B 190 LINK OE2 GLU A 40 CA CA A 302 1555 1555 2.31 LINK OE1 GLU A 40 CA CA A 303 1555 1555 2.36 LINK OD1 ASP A 85 CA CA A 303 1555 1555 2.32 LINK OE1 GLU A 87 CA CA A 302 1555 1555 2.69 LINK OE2 GLU A 87 CA CA A 302 1555 1555 2.47 LINK OE1 GLU A 87 CA CA A 303 1555 1555 2.31 LINK OD1 ASP A 118 CA CA A 302 1555 1555 2.33 LINK O ILE A 119 CA CA A 302 1555 1555 2.46 LINK OD1 ASN A 120 CA CA A 301 1555 1555 2.31 LINK OD1 ASP A 121 CA CA A 302 1555 1555 2.36 LINK OD2 ASP A 121 CA CA A 303 1555 1555 2.34 LINK O ASN A 122 CA CA A 301 1555 1555 2.35 LINK OD1 ASP A 152 CA CA A 301 1555 1555 2.40 LINK OD2 ASP A 152 CA CA A 301 1555 1555 2.62 LINK OD2 ASP A 154 CA CA A 301 1555 1555 2.38 LINK OD1 ASP A 154 CA CA A 302 1555 1555 2.26 LINK O ASN A 160 CA CA A 301 1555 1555 2.40 LINK OD2 ASP A 215 CA CA A 301 1555 1555 2.38 LINK CA CA A 303 O HOH A 614 1555 1555 2.34 LINK CA CA A 303 O HOH A 617 1555 1555 2.42 LINK O HOH A 577 NA NA B 304 1454 1555 2.61 LINK O HOH A 693 NA NA B 304 1555 1555 2.67 LINK OE2 GLU B 40 CA CA B 302 1555 1555 2.32 LINK OE1 GLU B 40 CA CA B 303 1555 1555 2.32 LINK OD1 ASP B 85 CA CA B 303 1555 1555 2.29 LINK OE1 GLU B 87 CA CA B 302 1555 1555 2.67 LINK OE2 GLU B 87 CA CA B 302 1555 1555 2.42 LINK OE1 GLU B 87 CA CA B 303 1555 1555 2.29 LINK OD1 ASP B 118 CA CA B 302 1555 1555 2.35 LINK O ILE B 119 CA CA B 302 1555 1555 2.49 LINK OD1 ASN B 120 CA CA B 301 1555 1555 2.38 LINK OD1 ASP B 121 CA CA B 302 1555 1555 2.43 LINK OD1 ASP B 121 CA CA B 303 1555 1555 3.16 LINK OD2 ASP B 121 CA CA B 303 1555 1555 2.33 LINK O ASN B 122 CA CA B 301 1555 1555 2.35 LINK OD1 ASP B 152 CA CA B 301 1555 1555 2.40 LINK OD2 ASP B 152 CA CA B 301 1555 1555 2.56 LINK OD2 ASP B 154 CA CA B 301 1555 1555 2.37 LINK OD1 ASP B 154 CA CA B 302 1555 1555 2.27 LINK O ASN B 160 CA CA B 301 1555 1555 2.36 LINK OD2 ASP B 215 CA CA B 301 1555 1555 2.37 LINK CA CA B 303 O HOH B 583 1555 1555 2.41 LINK CA CA B 303 O HOH B 607 1555 1555 2.39 LINK NA NA B 304 O HOH B 487 1555 1555 2.40 LINK NA NA B 304 O HOH B 617 1555 1555 2.76 LINK NA NA B 304 O HOH B 684 1555 1555 2.70 CISPEP 1 PRO A 55 PRO A 56 0 10.52 CISPEP 2 GLY A 108 PRO A 109 0 3.84 CISPEP 3 LEU A 171 PRO A 172 0 -9.84 CISPEP 4 PRO B 55 PRO B 56 0 8.15 CISPEP 5 GLY B 108 PRO B 109 0 3.21 CISPEP 6 LEU B 171 PRO B 172 0 -6.46 CRYST1 48.900 79.680 62.490 90.00 99.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020450 0.000000 0.003246 0.00000 SCALE2 0.000000 0.012550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016203 0.00000