HEADER STRUCTURAL PROTEIN 21-MAY-21 7EVM TITLE CRYO-EM STRUCTURE OF THE COMPOUND 2-BOUND HUMAN GLP-1 RECEPTOR-GS TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) SUBUNIT ALPHA COMPND 3 ISOFORMS SHORT; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ADENYLATE CYCLASE-STIMULATING G ALPHA PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 10 BETA-1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 16 GAMMA-2; COMPND 17 CHAIN: G; COMPND 18 SYNONYM: G GAMMA-I; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: NANOBODY-35; COMPND 22 CHAIN: N; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: GLUCAGON-LIKE PEPTIDE 1 RECEPTOR; COMPND 26 CHAIN: R; COMPND 27 SYNONYM: GLP-1 RECEPTOR,GLP-1-R,GLP-1R; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNAS, GNAS1, GSP; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: GNB1; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 17 ORGANISM_COMMON: BOVINE; SOURCE 18 ORGANISM_TAXID: 9913; SOURCE 19 GENE: GNG2; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 24 ORGANISM_TAXID: 32630; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 27 MOL_ID: 5; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 GENE: GLP1R; SOURCE 32 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GLUCAGON-LIKE PEPTIDE-1 RECEPTOR, AGO-ALLOSTERIC MODULATOR, TYPE 2 KEYWDS 2 DIABETES, COMPOUND 2, CLASS B GPCR, BIOSYNTHETIC PROTEIN, STRUCTURAL KEYWDS 3 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Z.CONG,L.CHEN,H.MA,Q.ZHOU,X.ZOU,C.YE,A.DAI,Q.LIU,W.HUANG,X.SUN, AUTHOR 2 X.WANG,P.XU,L.ZHAO,T.XIA,W.ZHONG,D.YANG,H.E.XU,Y.ZHANG,M.WANG REVDAT 1 11-AUG-21 7EVM 0 JRNL AUTH Z.CONG,L.N.CHEN,H.MA,Q.ZHOU,X.ZOU,C.YE,A.DAI,Q.LIU,W.HUANG, JRNL AUTH 2 X.SUN,X.WANG,P.XU,L.ZHAO,T.XIA,W.ZHONG,D.YANG,H.ERIC XU, JRNL AUTH 3 Y.ZHANG,M.W.WANG JRNL TITL MOLECULAR INSIGHTS INTO AGO-ALLOSTERIC MODULATION OF THE JRNL TITL 2 HUMAN GLUCAGON-LIKE PEPTIDE-1 RECEPTOR. JRNL REF NAT COMMUN V. 12 3763 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34145245 JRNL DOI 10.1038/S41467-021-24058-Z REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 340501 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7EVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022348. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF THE REMARK 245 COMPOUND 2-BOUND HUMAN GLP-1 REMARK 245 RECEPTOR-GS COMPLEX; GUANINE REMARK 245 NUCLEOTIDE-BINDING; NANOBODY-35; REMARK 245 GLP-1 RECEPTOR REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G, N, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 CYS A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 PHE A 68 REMARK 465 ASN A 69 REMARK 465 GLY A 70 REMARK 465 GLU A 71 REMARK 465 GLY A 72 REMARK 465 GLY A 73 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 ASP A 76 REMARK 465 PRO A 77 REMARK 465 GLN A 78 REMARK 465 ALA A 79 REMARK 465 ALA A 80 REMARK 465 ARG A 81 REMARK 465 SER A 82 REMARK 465 ASN A 83 REMARK 465 SER A 84 REMARK 465 ASP A 85 REMARK 465 GLY A 86 REMARK 465 GLU A 87 REMARK 465 LYS A 88 REMARK 465 ALA A 89 REMARK 465 THR A 90 REMARK 465 LYS A 91 REMARK 465 VAL A 92 REMARK 465 GLN A 93 REMARK 465 ASP A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 ASN A 97 REMARK 465 ASN A 98 REMARK 465 LEU A 99 REMARK 465 LYS A 100 REMARK 465 GLU A 101 REMARK 465 ALA A 102 REMARK 465 ILE A 103 REMARK 465 GLU A 104 REMARK 465 THR A 105 REMARK 465 ILE A 106 REMARK 465 VAL A 107 REMARK 465 ALA A 108 REMARK 465 ALA A 109 REMARK 465 MET A 110 REMARK 465 SER A 111 REMARK 465 ASN A 112 REMARK 465 LEU A 113 REMARK 465 VAL A 114 REMARK 465 PRO A 115 REMARK 465 PRO A 116 REMARK 465 VAL A 117 REMARK 465 GLU A 118 REMARK 465 LEU A 119 REMARK 465 ALA A 120 REMARK 465 ASN A 121 REMARK 465 PRO A 122 REMARK 465 GLU A 123 REMARK 465 ASN A 124 REMARK 465 GLN A 125 REMARK 465 PHE A 126 REMARK 465 ARG A 127 REMARK 465 VAL A 128 REMARK 465 ASP A 129 REMARK 465 TYR A 130 REMARK 465 ILE A 131 REMARK 465 LEU A 132 REMARK 465 SER A 133 REMARK 465 VAL A 134 REMARK 465 MET A 135 REMARK 465 ASN A 136 REMARK 465 VAL A 137 REMARK 465 PRO A 138 REMARK 465 ASP A 139 REMARK 465 PHE A 140 REMARK 465 ASP A 141 REMARK 465 PHE A 142 REMARK 465 PRO A 143 REMARK 465 PRO A 144 REMARK 465 GLU A 145 REMARK 465 PHE A 146 REMARK 465 TYR A 147 REMARK 465 GLU A 148 REMARK 465 HIS A 149 REMARK 465 ALA A 150 REMARK 465 LYS A 151 REMARK 465 ALA A 152 REMARK 465 LEU A 153 REMARK 465 TRP A 154 REMARK 465 GLU A 155 REMARK 465 ASP A 156 REMARK 465 GLU A 157 REMARK 465 GLY A 158 REMARK 465 VAL A 159 REMARK 465 ARG A 160 REMARK 465 ALA A 161 REMARK 465 CYS A 162 REMARK 465 TYR A 163 REMARK 465 GLU A 164 REMARK 465 ARG A 165 REMARK 465 SER A 166 REMARK 465 ASN A 167 REMARK 465 GLU A 168 REMARK 465 TYR A 169 REMARK 465 GLN A 170 REMARK 465 LEU A 171 REMARK 465 ILE A 172 REMARK 465 ASP A 173 REMARK 465 CYS A 174 REMARK 465 ALA A 175 REMARK 465 GLN A 176 REMARK 465 TYR A 177 REMARK 465 PHE A 178 REMARK 465 LEU A 179 REMARK 465 ASP A 180 REMARK 465 LYS A 181 REMARK 465 ILE A 182 REMARK 465 ASP A 183 REMARK 465 VAL A 184 REMARK 465 ILE A 185 REMARK 465 LYS A 186 REMARK 465 GLN A 187 REMARK 465 ALA A 188 REMARK 465 ASP A 189 REMARK 465 TYR A 190 REMARK 465 VAL A 191 REMARK 465 PRO A 192 REMARK 465 SER A 193 REMARK 465 ASP A 194 REMARK 465 GLN A 195 REMARK 465 ASP A 196 REMARK 465 LEU A 197 REMARK 465 LEU A 198 REMARK 465 ARG A 199 REMARK 465 CYS A 200 REMARK 465 ARG A 201 REMARK 465 VAL A 202 REMARK 465 LEU A 203 REMARK 465 THR A 204 REMARK 465 SER A 205 REMARK 465 GLY A 206 REMARK 465 MET A 255 REMARK 465 VAL A 256 REMARK 465 ILE A 257 REMARK 465 ARG A 258 REMARK 465 GLU A 259 REMARK 465 ASP A 260 REMARK 465 ASN A 261 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 LEU B -1 REMARK 465 LEU B 0 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 ALA G 2 REMARK 465 SER G 3 REMARK 465 ASN G 4 REMARK 465 ASN G 5 REMARK 465 THR G 6 REMARK 465 GLU G 63 REMARK 465 LYS G 64 REMARK 465 LYS G 65 REMARK 465 PHE G 66 REMARK 465 PHE G 67 REMARK 465 CYS G 68 REMARK 465 ALA G 69 REMARK 465 ILE G 70 REMARK 465 LEU G 71 REMARK 465 MET N -1 REMARK 465 ALA N 0 REMARK 465 SER N 127 REMARK 465 SER N 128 REMARK 465 HIS N 129 REMARK 465 HIS N 130 REMARK 465 HIS N 131 REMARK 465 HIS N 132 REMARK 465 HIS N 133 REMARK 465 HIS N 134 REMARK 465 GLU N 135 REMARK 465 PRO N 136 REMARK 465 GLU N 137 REMARK 465 ALA N 138 REMARK 465 ARG R 24 REMARK 465 PRO R 25 REMARK 465 GLN R 26 REMARK 465 GLY R 27 REMARK 465 ALA R 28 REMARK 465 THR R 29 REMARK 465 VAL R 30 REMARK 465 SER R 31 REMARK 465 LEU R 32 REMARK 465 TRP R 33 REMARK 465 GLU R 34 REMARK 465 THR R 35 REMARK 465 VAL R 36 REMARK 465 GLN R 37 REMARK 465 LYS R 38 REMARK 465 TRP R 39 REMARK 465 ARG R 40 REMARK 465 GLU R 41 REMARK 465 TYR R 42 REMARK 465 ARG R 43 REMARK 465 ARG R 44 REMARK 465 GLN R 45 REMARK 465 CYS R 46 REMARK 465 GLN R 47 REMARK 465 ARG R 48 REMARK 465 SER R 49 REMARK 465 LEU R 50 REMARK 465 THR R 51 REMARK 465 GLU R 52 REMARK 465 ASP R 53 REMARK 465 PRO R 54 REMARK 465 PRO R 55 REMARK 465 PRO R 56 REMARK 465 ALA R 57 REMARK 465 THR R 58 REMARK 465 ASP R 59 REMARK 465 LEU R 60 REMARK 465 PHE R 61 REMARK 465 CYS R 62 REMARK 465 ASN R 63 REMARK 465 ARG R 64 REMARK 465 THR R 65 REMARK 465 PHE R 66 REMARK 465 ASP R 67 REMARK 465 GLU R 68 REMARK 465 TYR R 69 REMARK 465 ALA R 70 REMARK 465 CYS R 71 REMARK 465 TRP R 72 REMARK 465 PRO R 73 REMARK 465 ASP R 74 REMARK 465 GLY R 75 REMARK 465 GLU R 76 REMARK 465 PRO R 77 REMARK 465 GLY R 78 REMARK 465 SER R 79 REMARK 465 PHE R 80 REMARK 465 VAL R 81 REMARK 465 ASN R 82 REMARK 465 VAL R 83 REMARK 465 SER R 84 REMARK 465 CYS R 85 REMARK 465 PRO R 86 REMARK 465 TRP R 87 REMARK 465 TYR R 88 REMARK 465 LEU R 89 REMARK 465 PRO R 90 REMARK 465 TRP R 91 REMARK 465 ALA R 92 REMARK 465 SER R 93 REMARK 465 SER R 94 REMARK 465 VAL R 95 REMARK 465 PRO R 96 REMARK 465 GLN R 97 REMARK 465 GLY R 98 REMARK 465 HIS R 99 REMARK 465 VAL R 100 REMARK 465 TYR R 101 REMARK 465 ARG R 102 REMARK 465 PHE R 103 REMARK 465 CYS R 104 REMARK 465 THR R 105 REMARK 465 ALA R 106 REMARK 465 GLU R 107 REMARK 465 GLY R 108 REMARK 465 LEU R 109 REMARK 465 TRP R 110 REMARK 465 LEU R 111 REMARK 465 GLN R 112 REMARK 465 LYS R 113 REMARK 465 ASP R 114 REMARK 465 ASN R 115 REMARK 465 SER R 116 REMARK 465 SER R 117 REMARK 465 LEU R 118 REMARK 465 PRO R 119 REMARK 465 TRP R 120 REMARK 465 ARG R 121 REMARK 465 ASP R 122 REMARK 465 LEU R 123 REMARK 465 SER R 124 REMARK 465 GLU R 125 REMARK 465 CYS R 126 REMARK 465 GLU R 127 REMARK 465 GLU R 128 REMARK 465 SER R 129 REMARK 465 LYS R 130 REMARK 465 ARG R 131 REMARK 465 GLY R 132 REMARK 465 GLU R 133 REMARK 465 ARG R 134 REMARK 465 SER R 135 REMARK 465 MET R 340 REMARK 465 CYS R 341 REMARK 465 LYS R 342 REMARK 465 MET R 371 REMARK 465 ASP R 372 REMARK 465 GLU R 373 REMARK 465 HIS R 374 REMARK 465 LEU R 425 REMARK 465 HIS R 426 REMARK 465 ILE R 427 REMARK 465 GLN R 428 REMARK 465 ARG R 429 REMARK 465 ASP R 430 REMARK 465 SER R 431 REMARK 465 SER R 432 REMARK 465 MET R 433 REMARK 465 LYS R 434 REMARK 465 PRO R 435 REMARK 465 LEU R 436 REMARK 465 LYS R 437 REMARK 465 CYS R 438 REMARK 465 PRO R 439 REMARK 465 THR R 440 REMARK 465 SER R 441 REMARK 465 SER R 442 REMARK 465 LEU R 443 REMARK 465 SER R 444 REMARK 465 SER R 445 REMARK 465 GLY R 446 REMARK 465 ALA R 447 REMARK 465 THR R 448 REMARK 465 ALA R 449 REMARK 465 GLY R 450 REMARK 465 SER R 451 REMARK 465 SER R 452 REMARK 465 MET R 453 REMARK 465 TYR R 454 REMARK 465 THR R 455 REMARK 465 ALA R 456 REMARK 465 THR R 457 REMARK 465 CYS R 458 REMARK 465 GLN R 459 REMARK 465 ALA R 460 REMARK 465 SER R 461 REMARK 465 CYS R 462 REMARK 465 SER R 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 58 OG SER B 316 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 216 -0.31 64.14 REMARK 500 ARG A 228 -178.31 -68.77 REMARK 500 ARG A 231 20.51 -77.44 REMARK 500 ALA B 28 -168.88 -161.27 REMARK 500 THR B 87 36.80 39.24 REMARK 500 ASN B 155 15.74 56.91 REMARK 500 ASP B 163 1.02 -69.10 REMARK 500 LYS N 43 60.58 61.38 REMARK 500 TYR N 117 37.50 -98.62 REMARK 500 LEU R 144 -51.93 -123.71 REMARK 500 ARG R 170 -39.31 72.69 REMARK 500 HIS R 173 99.72 -64.42 REMARK 500 GLN R 211 49.40 -149.82 REMARK 500 TRP R 214 -45.67 68.98 REMARK 500 LEU R 217 -43.50 -133.99 REMARK 500 LEU R 224 15.63 57.09 REMARK 500 ASP R 293 -166.68 -102.16 REMARK 500 TRP R 297 19.27 59.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30867 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE COMPOUND 2-BOUND HUMAN GLP-1 RECEPTOR-GS REMARK 900 COMPLEX REMARK 900 RELATED ID: EMD-31329 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE COMPOUND 2-BOUND HUMAN GLP-1 RECEPTOR-GS REMARK 900 COMPLEX DBREF 7EVM A 1 394 UNP P63092 GNAS2_HUMAN 1 394 DBREF 7EVM B 2 340 UNP P54311 GBB1_RAT 2 340 DBREF 7EVM G 2 71 UNP P63212 GBG2_BOVIN 2 71 DBREF 7EVM N -1 138 PDB 7EVM 7EVM -1 138 DBREF 7EVM R 24 463 UNP P43220 GLP1R_HUMAN 24 463 SEQADV 7EVM ASN A 54 UNP P63092 SER 54 ENGINEERED MUTATION SEQADV 7EVM ALA A 226 UNP P63092 GLY 226 ENGINEERED MUTATION SEQADV 7EVM ALA A 268 UNP P63092 GLU 268 ENGINEERED MUTATION SEQADV 7EVM LYS A 271 UNP P63092 ASN 271 ENGINEERED MUTATION SEQADV 7EVM ASP A 274 UNP P63092 LYS 274 ENGINEERED MUTATION SEQADV 7EVM LYS A 280 UNP P63092 ARG 280 ENGINEERED MUTATION SEQADV 7EVM ASP A 284 UNP P63092 THR 284 ENGINEERED MUTATION SEQADV 7EVM THR A 285 UNP P63092 ILE 285 ENGINEERED MUTATION SEQADV 7EVM MET B -4 UNP P54311 INITIATING METHIONINE SEQADV 7EVM GLY B -3 UNP P54311 EXPRESSION TAG SEQADV 7EVM SER B -2 UNP P54311 EXPRESSION TAG SEQADV 7EVM LEU B -1 UNP P54311 EXPRESSION TAG SEQADV 7EVM LEU B 0 UNP P54311 EXPRESSION TAG SEQADV 7EVM GLN B 1 UNP P54311 EXPRESSION TAG SEQRES 1 A 394 MET GLY CYS LEU GLY ASN SER LYS THR GLU ASP GLN ARG SEQRES 2 A 394 ASN GLU GLU LYS ALA GLN ARG GLU ALA ASN LYS LYS ILE SEQRES 3 A 394 GLU LYS GLN LEU GLN LYS ASP LYS GLN VAL TYR ARG ALA SEQRES 4 A 394 THR HIS ARG LEU LEU LEU LEU GLY ALA GLY GLU SER GLY SEQRES 5 A 394 LYS ASN THR ILE VAL LYS GLN MET ARG ILE LEU HIS VAL SEQRES 6 A 394 ASN GLY PHE ASN GLY GLU GLY GLY GLU GLU ASP PRO GLN SEQRES 7 A 394 ALA ALA ARG SER ASN SER ASP GLY GLU LYS ALA THR LYS SEQRES 8 A 394 VAL GLN ASP ILE LYS ASN ASN LEU LYS GLU ALA ILE GLU SEQRES 9 A 394 THR ILE VAL ALA ALA MET SER ASN LEU VAL PRO PRO VAL SEQRES 10 A 394 GLU LEU ALA ASN PRO GLU ASN GLN PHE ARG VAL ASP TYR SEQRES 11 A 394 ILE LEU SER VAL MET ASN VAL PRO ASP PHE ASP PHE PRO SEQRES 12 A 394 PRO GLU PHE TYR GLU HIS ALA LYS ALA LEU TRP GLU ASP SEQRES 13 A 394 GLU GLY VAL ARG ALA CYS TYR GLU ARG SER ASN GLU TYR SEQRES 14 A 394 GLN LEU ILE ASP CYS ALA GLN TYR PHE LEU ASP LYS ILE SEQRES 15 A 394 ASP VAL ILE LYS GLN ALA ASP TYR VAL PRO SER ASP GLN SEQRES 16 A 394 ASP LEU LEU ARG CYS ARG VAL LEU THR SER GLY ILE PHE SEQRES 17 A 394 GLU THR LYS PHE GLN VAL ASP LYS VAL ASN PHE HIS MET SEQRES 18 A 394 PHE ASP VAL GLY ALA GLN ARG ASP GLU ARG ARG LYS TRP SEQRES 19 A 394 ILE GLN CYS PHE ASN ASP VAL THR ALA ILE ILE PHE VAL SEQRES 20 A 394 VAL ALA SER SER SER TYR ASN MET VAL ILE ARG GLU ASP SEQRES 21 A 394 ASN GLN THR ASN ARG LEU GLN ALA ALA LEU LYS LEU PHE SEQRES 22 A 394 ASP SER ILE TRP ASN ASN LYS TRP LEU ARG ASP THR SER SEQRES 23 A 394 VAL ILE LEU PHE LEU ASN LYS GLN ASP LEU LEU ALA GLU SEQRES 24 A 394 LYS VAL LEU ALA GLY LYS SER LYS ILE GLU ASP TYR PHE SEQRES 25 A 394 PRO GLU PHE ALA ARG TYR THR THR PRO GLU ASP ALA THR SEQRES 26 A 394 PRO GLU PRO GLY GLU ASP PRO ARG VAL THR ARG ALA LYS SEQRES 27 A 394 TYR PHE ILE ARG ASP GLU PHE LEU ARG ILE SER THR ALA SEQRES 28 A 394 SER GLY ASP GLY ARG HIS TYR CYS TYR PRO HIS PHE THR SEQRES 29 A 394 CYS ALA VAL ASP THR GLU ASN ILE ARG ARG VAL PHE ASN SEQRES 30 A 394 ASP CYS ARG ASP ILE ILE GLN ARG MET HIS LEU ARG GLN SEQRES 31 A 394 TYR GLU LEU LEU SEQRES 1 B 345 MET GLY SER LEU LEU GLN SER GLU LEU ASP GLN LEU ARG SEQRES 2 B 345 GLN GLU ALA GLU GLN LEU LYS ASN GLN ILE ARG ASP ALA SEQRES 3 B 345 ARG LYS ALA CYS ALA ASP ALA THR LEU SER GLN ILE THR SEQRES 4 B 345 ASN ASN ILE ASP PRO VAL GLY ARG ILE GLN MET ARG THR SEQRES 5 B 345 ARG ARG THR LEU ARG GLY HIS LEU ALA LYS ILE TYR ALA SEQRES 6 B 345 MET HIS TRP GLY THR ASP SER ARG LEU LEU VAL SER ALA SEQRES 7 B 345 SER GLN ASP GLY LYS LEU ILE ILE TRP ASP SER TYR THR SEQRES 8 B 345 THR ASN LYS VAL HIS ALA ILE PRO LEU ARG SER SER TRP SEQRES 9 B 345 VAL MET THR CYS ALA TYR ALA PRO SER GLY ASN TYR VAL SEQRES 10 B 345 ALA CYS GLY GLY LEU ASP ASN ILE CYS SER ILE TYR ASN SEQRES 11 B 345 LEU LYS THR ARG GLU GLY ASN VAL ARG VAL SER ARG GLU SEQRES 12 B 345 LEU ALA GLY HIS THR GLY TYR LEU SER CYS CYS ARG PHE SEQRES 13 B 345 LEU ASP ASP ASN GLN ILE VAL THR SER SER GLY ASP THR SEQRES 14 B 345 THR CYS ALA LEU TRP ASP ILE GLU THR GLY GLN GLN THR SEQRES 15 B 345 THR THR PHE THR GLY HIS THR GLY ASP VAL MET SER LEU SEQRES 16 B 345 SER LEU ALA PRO ASP THR ARG LEU PHE VAL SER GLY ALA SEQRES 17 B 345 CYS ASP ALA SER ALA LYS LEU TRP ASP VAL ARG GLU GLY SEQRES 18 B 345 MET CYS ARG GLN THR PHE THR GLY HIS GLU SER ASP ILE SEQRES 19 B 345 ASN ALA ILE CYS PHE PHE PRO ASN GLY ASN ALA PHE ALA SEQRES 20 B 345 THR GLY SER ASP ASP ALA THR CYS ARG LEU PHE ASP LEU SEQRES 21 B 345 ARG ALA ASP GLN GLU LEU MET THR TYR SER HIS ASP ASN SEQRES 22 B 345 ILE ILE CYS GLY ILE THR SER VAL SER PHE SER LYS SER SEQRES 23 B 345 GLY ARG LEU LEU LEU ALA GLY TYR ASP ASP PHE ASN CYS SEQRES 24 B 345 ASN VAL TRP ASP ALA LEU LYS ALA ASP ARG ALA GLY VAL SEQRES 25 B 345 LEU ALA GLY HIS ASP ASN ARG VAL SER CYS LEU GLY VAL SEQRES 26 B 345 THR ASP ASP GLY MET ALA VAL ALA THR GLY SER TRP ASP SEQRES 27 B 345 SER PHE LEU LYS ILE TRP ASN SEQRES 1 G 70 ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG LYS SEQRES 2 G 70 LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP ARG SEQRES 3 G 70 ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA TYR SEQRES 4 G 70 CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR PRO SEQRES 5 G 70 VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS PHE SEQRES 6 G 70 PHE CYS ALA ILE LEU SEQRES 1 N 140 MET ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU SEQRES 2 N 140 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SEQRES 3 N 140 SER GLY PHE THR PHE SER ASN TYR LYS MET ASN TRP VAL SEQRES 4 N 140 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ASP SEQRES 5 N 140 ILE SER GLN SER GLY ALA SER ILE SER TYR THR GLY SER SEQRES 6 N 140 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 N 140 ASN THR LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU SEQRES 8 N 140 ASP THR ALA VAL TYR TYR CYS ALA ARG CYS PRO ALA PRO SEQRES 9 N 140 PHE THR ARG ASP CYS PHE ASP VAL THR SER THR THR TYR SEQRES 10 N 140 ALA TYR ARG GLY GLN GLY THR GLN VAL THR VAL SER SER SEQRES 11 N 140 HIS HIS HIS HIS HIS HIS GLU PRO GLU ALA SEQRES 1 R 440 ARG PRO GLN GLY ALA THR VAL SER LEU TRP GLU THR VAL SEQRES 2 R 440 GLN LYS TRP ARG GLU TYR ARG ARG GLN CYS GLN ARG SER SEQRES 3 R 440 LEU THR GLU ASP PRO PRO PRO ALA THR ASP LEU PHE CYS SEQRES 4 R 440 ASN ARG THR PHE ASP GLU TYR ALA CYS TRP PRO ASP GLY SEQRES 5 R 440 GLU PRO GLY SER PHE VAL ASN VAL SER CYS PRO TRP TYR SEQRES 6 R 440 LEU PRO TRP ALA SER SER VAL PRO GLN GLY HIS VAL TYR SEQRES 7 R 440 ARG PHE CYS THR ALA GLU GLY LEU TRP LEU GLN LYS ASP SEQRES 8 R 440 ASN SER SER LEU PRO TRP ARG ASP LEU SER GLU CYS GLU SEQRES 9 R 440 GLU SER LYS ARG GLY GLU ARG SER SER PRO GLU GLU GLN SEQRES 10 R 440 LEU LEU PHE LEU TYR ILE ILE TYR THR VAL GLY TYR ALA SEQRES 11 R 440 LEU SER PHE SER ALA LEU VAL ILE ALA SER ALA ILE LEU SEQRES 12 R 440 LEU GLY PHE ARG HIS LEU HIS CYS THR ARG ASN TYR ILE SEQRES 13 R 440 HIS LEU ASN LEU PHE ALA SER PHE ILE LEU ARG ALA LEU SEQRES 14 R 440 SER VAL PHE ILE LYS ASP ALA ALA LEU LYS TRP MET TYR SEQRES 15 R 440 SER THR ALA ALA GLN GLN HIS GLN TRP ASP GLY LEU LEU SEQRES 16 R 440 SER TYR GLN ASP SER LEU SER CYS ARG LEU VAL PHE LEU SEQRES 17 R 440 LEU MET GLN TYR CYS VAL ALA ALA ASN TYR TYR TRP LEU SEQRES 18 R 440 LEU VAL GLU GLY VAL TYR LEU TYR THR LEU LEU ALA PHE SEQRES 19 R 440 SER VAL LEU SER GLU GLN TRP ILE PHE ARG LEU TYR VAL SEQRES 20 R 440 SER ILE GLY TRP GLY VAL PRO LEU LEU PHE VAL VAL PRO SEQRES 21 R 440 TRP GLY ILE VAL LYS TYR LEU TYR GLU ASP GLU GLY CYS SEQRES 22 R 440 TRP THR ARG ASN SER ASN MET ASN TYR TRP LEU ILE ILE SEQRES 23 R 440 ARG LEU PRO ILE LEU PHE ALA ILE GLY VAL ASN PHE LEU SEQRES 24 R 440 ILE PHE VAL ARG VAL ILE CYS ILE VAL VAL SER LYS LEU SEQRES 25 R 440 LYS ALA ASN LEU MET CYS LYS THR ASP ILE LYS CYS ARG SEQRES 26 R 440 LEU ALA LYS SER THR LEU THR LEU ILE PRO LEU LEU GLY SEQRES 27 R 440 THR HIS GLU VAL ILE PHE ALA PHE VAL MET ASP GLU HIS SEQRES 28 R 440 ALA ARG GLY THR LEU ARG PHE ILE LYS LEU PHE THR GLU SEQRES 29 R 440 LEU SER PHE THR SER PHE GLN GLY LEU MET VAL ALA ILE SEQRES 30 R 440 LEU TYR CYS PHE VAL ASN ASN GLU VAL GLN LEU GLU PHE SEQRES 31 R 440 ARG LYS SER TRP GLU ARG TRP ARG LEU GLU HIS LEU HIS SEQRES 32 R 440 ILE GLN ARG ASP SER SER MET LYS PRO LEU LYS CYS PRO SEQRES 33 R 440 THR SER SER LEU SER SER GLY ALA THR ALA GLY SER SER SEQRES 34 R 440 MET TYR THR ALA THR CYS GLN ALA SER CYS SER HET HNO R 501 17 HET CLR R 502 28 HET CLR R 503 28 HET CLR R 504 28 HET CLR R 505 29 HET CLR R 506 74 HET CLR R 507 74 HETNAM HNO N-TERT-BUTYL-6,7-BIS(CHLORANYL)QUINOXALIN-2-AMINE HETNAM CLR CHOLESTEROL FORMUL 6 HNO C12 H13 CL2 N3 FORMUL 7 CLR 6(C27 H46 O) HELIX 1 AA1 GLN A 12 ARG A 38 1 27 HELIX 2 AA2 GLY A 52 ILE A 62 1 11 HELIX 3 AA3 LYS A 233 ASN A 239 5 7 HELIX 4 AA4 ASN A 264 ASN A 278 1 15 HELIX 5 AA5 ASP A 295 GLY A 304 1 10 HELIX 6 AA6 PHE A 312 ALA A 316 5 5 HELIX 7 AA7 ASP A 331 ALA A 351 1 21 HELIX 8 AA8 GLU A 370 ARG A 389 1 20 HELIX 9 AA9 LEU B 4 ALA B 26 1 23 HELIX 10 AB1 THR B 29 THR B 34 1 6 HELIX 11 AB2 ASN B 35 ILE B 37 5 3 HELIX 12 AB3 SER G 8 ASN G 24 1 17 HELIX 13 AB4 LYS G 29 HIS G 44 1 16 HELIX 14 AB5 PRO G 55 ASN G 59 5 5 HELIX 15 AB6 THR N 28 TYR N 32 5 5 HELIX 16 AB7 THR N 61 LYS N 65 5 5 HELIX 17 AB8 LYS N 87 THR N 91 5 5 HELIX 18 AB9 PRO R 137 PHE R 143 1 7 HELIX 19 AC1 LEU R 144 PHE R 169 1 26 HELIX 20 AC2 CYS R 174 GLN R 211 1 38 HELIX 21 AC3 LEU R 217 ASP R 222 1 6 HELIX 22 AC4 CYS R 226 PHE R 257 1 32 HELIX 23 AC5 GLN R 263 GLU R 292 1 30 HELIX 24 AC6 ASN R 302 ALA R 337 1 36 HELIX 25 AC7 ILE R 345 GLY R 361 1 17 HELIX 26 AC8 HIS R 363 ALA R 368 1 6 HELIX 27 AC9 ARG R 376 PHE R 404 1 29 HELIX 28 AD1 ASN R 406 HIS R 424 1 19 SHEET 1 AA1 6 PHE A 208 VAL A 214 0 SHEET 2 AA1 6 VAL A 217 ASP A 223 -1 O MET A 221 N THR A 210 SHEET 3 AA1 6 HIS A 41 GLY A 47 1 N HIS A 41 O HIS A 220 SHEET 4 AA1 6 ALA A 243 ALA A 249 1 O ILE A 245 N LEU A 44 SHEET 5 AA1 6 SER A 286 ASN A 292 1 O PHE A 290 N PHE A 246 SHEET 6 AA1 6 CYS A 359 PHE A 363 1 O HIS A 362 N LEU A 291 SHEET 1 AA2 4 THR B 47 LEU B 51 0 SHEET 2 AA2 4 LEU B 336 TRP B 339 -1 O LEU B 336 N LEU B 51 SHEET 3 AA2 4 VAL B 327 SER B 331 -1 N THR B 329 O LYS B 337 SHEET 4 AA2 4 VAL B 315 VAL B 320 -1 N GLY B 319 O ALA B 328 SHEET 1 AA3 4 ILE B 58 TRP B 63 0 SHEET 2 AA3 4 LEU B 69 SER B 74 -1 O ALA B 73 N ALA B 60 SHEET 3 AA3 4 LYS B 78 ASP B 83 -1 O ILE B 80 N SER B 72 SHEET 4 AA3 4 ASN B 88 PRO B 94 -1 O VAL B 90 N ILE B 81 SHEET 1 AA4 4 VAL B 100 TYR B 105 0 SHEET 2 AA4 4 TYR B 111 GLY B 116 -1 O ALA B 113 N ALA B 104 SHEET 3 AA4 4 CYS B 121 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA4 4 ARG B 134 LEU B 139 -1 O SER B 136 N ILE B 123 SHEET 1 AA5 4 LEU B 146 PHE B 151 0 SHEET 2 AA5 4 GLN B 156 SER B 161 -1 O SER B 160 N CYS B 148 SHEET 3 AA5 4 THR B 165 ASP B 170 -1 O TRP B 169 N ILE B 157 SHEET 4 AA5 4 GLN B 175 THR B 181 -1 O THR B 177 N LEU B 168 SHEET 1 AA6 4 VAL B 187 LEU B 192 0 SHEET 2 AA6 4 LEU B 198 ALA B 203 -1 O GLY B 202 N MET B 188 SHEET 3 AA6 4 ALA B 208 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA6 4 CYS B 218 PHE B 222 -1 O PHE B 222 N ALA B 208 SHEET 1 AA7 4 ILE B 229 PHE B 234 0 SHEET 2 AA7 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233 SHEET 3 AA7 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 AA7 4 GLU B 260 TYR B 264 -1 O TYR B 264 N CYS B 250 SHEET 1 AA8 4 ILE B 273 PHE B 278 0 SHEET 2 AA8 4 LEU B 284 TYR B 289 -1 O GLY B 288 N SER B 275 SHEET 3 AA8 4 CYS B 294 ASP B 298 -1 O TRP B 297 N LEU B 285 SHEET 4 AA8 4 ARG B 304 LEU B 308 -1 O LEU B 308 N CYS B 294 SHEET 1 AA9 4 GLN N 3 SER N 7 0 SHEET 2 AA9 4 SER N 17 SER N 25 -1 O SER N 25 N GLN N 3 SHEET 3 AA9 4 THR N 78 ASN N 84 -1 O MET N 83 N LEU N 18 SHEET 4 AA9 4 PHE N 68 ASP N 73 -1 N THR N 69 O GLN N 82 SHEET 1 AB1 5 GLY N 10 LEU N 11 0 SHEET 2 AB1 5 THR N 122 THR N 125 1 O GLN N 123 N GLY N 10 SHEET 3 AB1 5 ALA N 92 ARG N 98 -1 N TYR N 94 O THR N 122 SHEET 4 AB1 5 MET N 34 ALA N 40 -1 N VAL N 37 O TYR N 95 SHEET 5 AB1 5 GLY N 44 ILE N 51 -1 O VAL N 48 N TRP N 36 SSBOND 1 CYS N 22 CYS N 96 1555 1555 2.03 SSBOND 2 CYS N 99 CYS N 107 1555 1555 2.06 SSBOND 3 CYS R 226 CYS R 296 1555 1555 2.05 LINK SG CYS R 347 C12 HNO R 501 1555 1555 1.77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000