HEADER TRANSCRIPTION 25-MAY-21 7EWF TITLE SELENOMETHIONINE-SUBSTITUTED STRUCTURE OF S. CEREVISIAE CSN12 IN TITLE 2 COMPLEX WITH THP3 AND SEM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN THP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THO-RELATED PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COP9 SIGNALOSOME COMPLEX SUBUNIT 12; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 26S PROTEASOME COMPLEX SUBUNIT SEM1; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: THP3, YPR045C, YP9499.03C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 9 ORGANISM_TAXID: 559292; SOURCE 10 GENE: CSN12, YJR084W, J1860; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 GENE: SEM1, DSH1, YDR363W-A; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, NUCLEIC ACID BINDING, TRANSCRIPTION, MRNA SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR Z.KUANG,L.NIU REVDAT 2 05-APR-23 7EWF 1 JRNL REVDAT 1 07-SEP-22 7EWF 0 JRNL AUTH Z.KUANG,J.KE,J.HONG,Z.ZHU,L.NIU JRNL TITL STRUCTURAL ASSEMBLY OF THE NUCLEIC-ACID-BINDING JRNL TITL 2 THP3-CSN12-SEM1 COMPLEX FUNCTIONING IN MRNA SPLICING. JRNL REF NUCLEIC ACIDS RES. V. 50 8882 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35904806 JRNL DOI 10.1093/NAR/GKAC634 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 23630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5800 - 5.6900 0.98 2893 157 0.2039 0.2400 REMARK 3 2 5.6900 - 4.5200 1.00 2841 143 0.1954 0.2218 REMARK 3 3 4.5200 - 3.9500 1.00 2850 111 0.1760 0.2033 REMARK 3 4 3.9500 - 3.5900 1.00 2812 141 0.2099 0.2522 REMARK 3 5 3.5900 - 3.3300 1.00 2763 170 0.2289 0.3030 REMARK 3 6 3.3300 - 3.1400 1.00 2726 188 0.2578 0.2951 REMARK 3 7 3.1400 - 2.9800 1.00 2761 145 0.2544 0.3318 REMARK 3 8 2.9800 - 2.8500 1.00 2803 126 0.3007 0.3539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.366 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.704 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6234 REMARK 3 ANGLE : 0.823 8407 REMARK 3 CHIRALITY : 0.050 932 REMARK 3 PLANARITY : 0.006 1071 REMARK 3 DIHEDRAL : 18.062 3816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0550 -5.1330 8.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.3616 T22: 0.2510 REMARK 3 T33: 0.3510 T12: 0.0169 REMARK 3 T13: 0.0291 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.1230 L22: 0.0854 REMARK 3 L33: 0.1715 L12: 0.0865 REMARK 3 L13: -0.0241 L23: -0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.0207 S13: -0.0647 REMARK 3 S21: -0.1151 S22: -0.2472 S23: -0.0678 REMARK 3 S31: -0.0592 S32: 0.0255 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.2541 17.1421 8.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.4401 T22: 0.3008 REMARK 3 T33: 0.3436 T12: -0.0010 REMARK 3 T13: -0.0099 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: -0.0200 L22: 0.0597 REMARK 3 L33: -0.0043 L12: -0.0327 REMARK 3 L13: -0.0114 L23: -0.0214 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.0706 S13: 0.0358 REMARK 3 S21: -0.0329 S22: -0.0353 S23: 0.0709 REMARK 3 S31: -0.1675 S32: -0.0693 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.4397 20.5619 25.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.3080 REMARK 3 T33: 0.2926 T12: -0.0025 REMARK 3 T13: 0.0803 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.0249 L22: 0.0369 REMARK 3 L33: 0.0415 L12: 0.0163 REMARK 3 L13: -0.0165 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.0764 S13: -0.1284 REMARK 3 S21: 0.1322 S22: 0.1730 S23: 0.0600 REMARK 3 S31: 0.0102 S32: -0.1765 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1484 28.6016 16.4695 REMARK 3 T TENSOR REMARK 3 T11: 0.9741 T22: 1.2656 REMARK 3 T33: 1.1423 T12: -0.2187 REMARK 3 T13: -0.1930 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.0091 L22: -0.0057 REMARK 3 L33: -0.0023 L12: -0.0432 REMARK 3 L13: -0.0143 L23: 0.0114 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.0704 S13: 0.0435 REMARK 3 S21: -0.0635 S22: -0.0958 S23: 0.0195 REMARK 3 S31: 0.0792 S32: 0.1261 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7378 36.1639 17.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.5563 T22: -0.9210 REMARK 3 T33: -0.0536 T12: -0.6295 REMARK 3 T13: -0.0379 T23: 0.9425 REMARK 3 L TENSOR REMARK 3 L11: 0.0885 L22: 0.0360 REMARK 3 L33: -0.0115 L12: 0.0124 REMARK 3 L13: 0.0312 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: -0.5731 S13: 0.2268 REMARK 3 S21: 0.6596 S22: -0.0606 S23: -0.6104 REMARK 3 S31: -0.3340 S32: 0.5964 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.2987 37.0159 11.0532 REMARK 3 T TENSOR REMARK 3 T11: 0.5220 T22: 0.2222 REMARK 3 T33: 0.3240 T12: 0.0823 REMARK 3 T13: 0.0961 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.0524 L22: 0.0651 REMARK 3 L33: 0.0397 L12: 0.0366 REMARK 3 L13: -0.0534 L23: -0.0681 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: 0.2012 S13: -0.0125 REMARK 3 S21: 0.3047 S22: 0.0367 S23: 0.1208 REMARK 3 S31: -0.4109 S32: -0.0118 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 32 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3383 46.6143 13.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.9604 T22: 0.5569 REMARK 3 T33: 0.8626 T12: -0.1584 REMARK 3 T13: -0.1138 T23: 0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.0099 L22: 0.0084 REMARK 3 L33: 0.0061 L12: 0.0128 REMARK 3 L13: 0.0006 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.0152 S13: 0.0213 REMARK 3 S21: 0.1003 S22: 0.0571 S23: 0.0376 REMARK 3 S31: -0.1345 S32: 0.0232 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 58 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.5591 51.7235 11.2143 REMARK 3 T TENSOR REMARK 3 T11: 0.8373 T22: 0.4755 REMARK 3 T33: 0.7552 T12: -0.1182 REMARK 3 T13: 0.1668 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 0.0008 L22: 0.0002 REMARK 3 L33: -0.0021 L12: 0.0040 REMARK 3 L13: -0.0018 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0289 S12: -0.0061 S13: 0.0373 REMARK 3 S21: 0.0011 S22: 0.0162 S23: -0.0254 REMARK 3 S31: 0.0025 S32: 0.0314 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.3578 47.8562 0.9243 REMARK 3 T TENSOR REMARK 3 T11: 0.7396 T22: 0.6576 REMARK 3 T33: 0.7734 T12: 0.2465 REMARK 3 T13: 0.1654 T23: 0.2553 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.0060 REMARK 3 L33: 0.0014 L12: -0.0053 REMARK 3 L13: 0.0044 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.0262 S13: 0.0027 REMARK 3 S21: -0.0063 S22: 0.0504 S23: 0.0502 REMARK 3 S31: 0.0108 S32: -0.0044 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23736 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.60 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 100 MM SODIUM MALONATE REMARK 280 BUFFER (PH 5.0) AND 3% METHANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.89800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.44900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.44900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.89800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 HIS A 184 REMARK 465 MSE A 185 REMARK 465 LYS A 186 REMARK 465 MSE A 459 REMARK 465 LYS A 460 REMARK 465 SER A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 ILE A 464 REMARK 465 ASP A 465 REMARK 465 ILE A 466 REMARK 465 LYS A 467 REMARK 465 GLY A 468 REMARK 465 GLN A 469 REMARK 465 LYS A 470 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 370 REMARK 465 GLN B 371 REMARK 465 HIS B 372 REMARK 465 ASP B 373 REMARK 465 SER B 374 REMARK 465 SER B 375 REMARK 465 ALA B 376 REMARK 465 ASN B 377 REMARK 465 MSE C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 ASP C 4 REMARK 465 VAL C 5 REMARK 465 ALA C 6 REMARK 465 ALA C 7 REMARK 465 ALA C 8 REMARK 465 GLN C 9 REMARK 465 ALA C 10 REMARK 465 GLN C 11 REMARK 465 SER C 12 REMARK 465 LYS C 13 REMARK 465 ILE C 14 REMARK 465 ASP C 15 REMARK 465 LEU C 16 REMARK 465 THR C 17 REMARK 465 LYS C 18 REMARK 465 LYS C 19 REMARK 465 LYS C 20 REMARK 465 ASN C 21 REMARK 465 GLU C 22 REMARK 465 GLU C 23 REMARK 465 ILE C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 LYS C 27 REMARK 465 SER C 28 REMARK 465 LEU C 29 REMARK 465 GLU C 30 REMARK 465 GLU C 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 29 -179.91 -69.95 REMARK 500 ARG B 38 72.37 68.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7EWF A 186 470 UNP Q12049 THP3_YEAST 186 470 DBREF 7EWF B 1 423 UNP P47130 CSN12_YEAST 1 423 DBREF 7EWF C 1 89 UNP O94742 SEM1_YEAST 1 89 SEQADV 7EWF GLY A 182 UNP Q12049 EXPRESSION TAG SEQADV 7EWF SER A 183 UNP Q12049 EXPRESSION TAG SEQADV 7EWF HIS A 184 UNP Q12049 EXPRESSION TAG SEQADV 7EWF MSE A 185 UNP Q12049 EXPRESSION TAG SEQRES 1 A 289 GLY SER HIS MSE LYS ILE HIS VAL VAL GLY ARG CYS GLN SEQRES 2 A 289 THR LEU GLU LYS SER TYR LEU ARG LEU THR SER GLU PRO SEQRES 3 A 289 ASN PRO ASP LEU ILE ARG PRO PRO ASN ILE LEU GLN LYS SEQRES 4 A 289 MSE TYR CYS LEU LEU MSE ASP LYS TYR GLN SER LYS THR SEQRES 5 A 289 ALA THR TYR THR TYR LEU CYS ASP GLN PHE LYS SER MSE SEQRES 6 A 289 ARG GLN ASP LEU ARG VAL GLN MSE ILE GLU ASN SER PHE SEQRES 7 A 289 THR ILE LYS VAL TYR GLN THR HIS ALA ARG ILE ALA LEU SEQRES 8 A 289 GLU ASN GLY ASP LEU GLY GLU PHE ASN GLN CYS GLN ASN SEQRES 9 A 289 ARG ILE MSE ALA LEU PHE GLU ASN PRO THR ILE PRO LYS SEQRES 10 A 289 LYS SER TYR SER GLU PHE ILE CYS TYR SER VAL LEU TYR SEQRES 11 A 289 SER MSE LEU THR GLU ASP TYR PRO SER ILE SER HIS LEU SEQRES 12 A 289 LYS LEU LYS LEU ILE ASP ASP GLY SER SER GLU ILE LEU SEQRES 13 A 289 GLU ASP GLU HIS VAL LYS MSE ILE PHE GLU LEU SER ASP SEQRES 14 A 289 MSE LYS LEU VAL GLY ASN TYR HIS TYR PHE MSE LYS ASN SEQRES 15 A 289 TYR LEU LYS LEU HIS LYS PHE GLU LYS CYS LEU ILE ASN SEQRES 16 A 289 SER PHE LEU ASN LEU GLU LYS LEU ILE PHE LEU THR ILE SEQRES 17 A 289 ILE CYS LYS SER TYR ASN GLN VAL ASN LEU ASP PHE VAL SEQRES 18 A 289 LYS SER GLU PHE ASN PHE ASN SER ILE GLU GLU THR THR SEQRES 19 A 289 ASN PHE LEU ASN GLU GLN ASN LEU THR GLU PHE ILE LEU SEQRES 20 A 289 ASN LYS GLN ILE THR ASP SER ASN GLY LYS SER SER ASN SEQRES 21 A 289 ILE LYS ILE LEU ASN THR LYS GLY CYS ARG VAL GLN LEU SEQRES 22 A 289 ILE GLN ASN TYR MSE LYS SER LYS LYS ILE ASP ILE LYS SEQRES 23 A 289 GLY GLN LYS SEQRES 1 B 423 MSE ASP VAL ASP ILE GLY CYS TYR PHE GLU GLU LYS ARG SEQRES 2 B 423 TYR ASP ASP LYS LEU LEU ASP PHE ILE ARG TYR ASP VAL SEQRES 3 B 423 LYS THR PRO LYS LYS THR LYS TYR ILE LEU GLN ARG PRO SEQRES 4 B 423 THR ALA THR ASP GLU GLU SER VAL ARG LEU GLN ARG PHE SEQRES 5 B 423 TYR GLN LEU GLY VAL ASP LEU LYS LEU LYS TYR SER LYS SEQRES 6 B 423 ARG ARG SER LEU LYS LYS GLN GLY ARG ILE LYS ASN ALA SEQRES 7 B 423 THR GLU GLU LEU LEU ARG LEU ALA ASN GLU GLN LEU LYS SEQRES 8 B 423 LEU PHE ASN ARG ILE VAL GLU ARG GLU THR ASN TRP ILE SEQRES 9 B 423 ILE TYR PRO LEU TRP VAL MSE ALA LYS GLN LEU ILE ARG SEQRES 10 B 423 LEU ALA ASN GLU SER SER GLU LEU ASN LYS ASP SER ILE SEQRES 11 B 423 GLU GLU CYS GLY ARG THR ILE HIS ARG SER PHE THR ILE SEQRES 12 B 423 CYS LEU ASN ASP ARG ASN PRO ARG LEU ASN GLU ASN LYS SEQRES 13 B 423 LYS ILE GLY CYS TYR MSE PHE ALA ASN LEU GLU PHE SER SEQRES 14 B 423 ILE TYR HIS ARG LEU SER ASN LYS ASP MSE ILE LYS ASN SEQRES 15 B 423 LEU VAL LYS VAL LEU GLU SER ARG VAL ASN ALA ARG ASP SEQRES 16 B 423 ILE PRO PRO LEU ASN LYS SER LEU ALA MSE GLU HIS LYS SEQRES 17 B 423 SER GLN VAL VAL LEU TYR ASN TYR TYR LEU GLY GLN TYR SEQRES 18 B 423 TYR GLY CYS LEU GLU ASN ASP HIS GLU ARG GLY PHE PHE SEQRES 19 B 423 HIS LEU ASN GLU ALA LEU LEU GLN CYS PRO MSE LEU TYR SEQRES 20 B 423 VAL GLU SER THR GLY LYS PHE VAL LEU GLN GLY GLN MSE SEQRES 21 B 423 GLU LYS ILE MSE ILE LEU LEU VAL PRO LEU ALA LEU LEU SEQRES 22 B 423 THR LYS ARG LEU TYR PRO HIS TRP ASP HIS PRO VAL ILE SEQRES 23 B 423 ALA GLY VAL ILE THR ARG SER LYS ARG LEU SER GLN VAL SEQRES 24 B 423 TYR PRO THR LEU VAL ARG SER VAL ILE SER GLY ASN LEU SEQRES 25 B 423 SER LEU TYR GLU ALA THR ALA ALA SER HIS GLU ARG PHE SEQRES 26 B 423 PHE LEU SER GLN GLY LEU HIS VAL VAL ILE THR LEU LEU SEQRES 27 B 423 ARG GLU VAL VAL PHE THR ARG LEU VAL GLN ARG CYS TRP SEQRES 28 B 423 GLN TRP GLY ASN ASP ARG LYS SER ILE MSE PRO LEU LYS SEQRES 29 B 423 ILE LEU LEU ALA THR LYS GLN HIS ASP SER SER ALA ASN SEQRES 30 B 423 GLU ASP GLU GLU GLU GLN LEU ASP ALA LEU GLU CYS ARG SEQRES 31 B 423 LEU ALA SER ALA ILE ALA SER GLY LEU LEU ARG ALA TYR SEQRES 32 B 423 LEU SER HIS SER ASN ARG CYS ILE VAL PHE SER LYS LYS SEQRES 33 B 423 GLU PRO PHE PRO HIS SER LYS SEQRES 1 C 89 MSE SER THR ASP VAL ALA ALA ALA GLN ALA GLN SER LYS SEQRES 2 C 89 ILE ASP LEU THR LYS LYS LYS ASN GLU GLU ILE ASN LYS SEQRES 3 C 89 LYS SER LEU GLU GLU ASP ASP GLU PHE GLU ASP PHE PRO SEQRES 4 C 89 ILE ASP THR TRP ALA ASN GLY GLU THR ILE LYS SER ASN SEQRES 5 C 89 ALA VAL THR GLN THR ASN ILE TRP GLU GLU ASN TRP ASP SEQRES 6 C 89 ASP VAL GLU VAL ASP ASP ASP PHE THR ASN GLU LEU LYS SEQRES 7 C 89 ALA GLU LEU ASP ARG TYR LYS ARG GLU ASN GLN MODRES 7EWF MSE A 221 MET MODIFIED RESIDUE MODRES 7EWF MSE A 226 MET MODIFIED RESIDUE MODRES 7EWF MSE A 246 MET MODIFIED RESIDUE MODRES 7EWF MSE A 254 MET MODIFIED RESIDUE MODRES 7EWF MSE A 288 MET MODIFIED RESIDUE MODRES 7EWF MSE A 313 MET MODIFIED RESIDUE MODRES 7EWF MSE A 344 MET MODIFIED RESIDUE MODRES 7EWF MSE A 351 MET MODIFIED RESIDUE MODRES 7EWF MSE A 361 MET MODIFIED RESIDUE MODRES 7EWF MSE B 111 MET MODIFIED RESIDUE MODRES 7EWF MSE B 162 MET MODIFIED RESIDUE MODRES 7EWF MSE B 179 MET MODIFIED RESIDUE MODRES 7EWF MSE B 205 MET MODIFIED RESIDUE MODRES 7EWF MSE B 245 MET MODIFIED RESIDUE MODRES 7EWF MSE B 260 MET MODIFIED RESIDUE MODRES 7EWF MSE B 264 MET MODIFIED RESIDUE MODRES 7EWF MSE B 361 MET MODIFIED RESIDUE HET MSE A 221 8 HET MSE A 226 8 HET MSE A 246 8 HET MSE A 254 8 HET MSE A 288 8 HET MSE A 313 8 HET MSE A 344 8 HET MSE A 351 8 HET MSE A 361 8 HET MSE B 111 8 HET MSE B 162 8 HET MSE B 179 8 HET MSE B 205 8 HET MSE B 245 8 HET MSE B 260 8 HET MSE B 264 8 HET MSE B 361 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 4 HOH *8(H2 O) HELIX 1 AA1 PRO A 214 LYS A 232 1 19 HELIX 2 AA2 THR A 235 GLN A 253 1 19 HELIX 3 AA3 ASN A 257 ASN A 274 1 18 HELIX 4 AA4 ASP A 276 GLU A 292 1 17 HELIX 5 AA5 SER A 300 THR A 315 1 16 HELIX 6 AA6 ASP A 317 ASP A 331 1 15 HELIX 7 AA7 SER A 333 GLU A 338 1 6 HELIX 8 AA8 ASP A 339 VAL A 354 1 16 HELIX 9 AA9 ASN A 356 ASN A 363 1 8 HELIX 10 AB1 HIS A 368 ASN A 376 1 9 HELIX 11 AB2 PHE A 378 TYR A 394 1 17 HELIX 12 AB3 LEU A 399 PHE A 406 1 8 HELIX 13 AB4 SER A 410 GLU A 420 1 11 HELIX 14 AB5 GLN A 421 ASN A 422 5 2 HELIX 15 AB6 LEU A 423 GLU A 425 5 3 HELIX 16 AB7 ASN A 446 TYR A 458 1 13 HELIX 17 AB8 CYS B 7 GLU B 11 1 5 HELIX 18 AB9 ASP B 15 ARG B 23 1 9 HELIX 19 AC1 ASP B 43 SER B 68 1 26 HELIX 20 AC2 ILE B 75 GLU B 98 1 24 HELIX 21 AC3 ARG B 99 GLU B 100 5 2 HELIX 22 AC4 THR B 101 TRP B 103 5 3 HELIX 23 AC5 ILE B 104 SER B 122 1 19 HELIX 24 AC6 SER B 129 ASN B 146 1 18 HELIX 25 AC7 LYS B 156 ILE B 158 5 3 HELIX 26 AC8 GLY B 159 LEU B 174 1 16 HELIX 27 AC9 ASN B 176 ALA B 193 1 18 HELIX 28 AD1 PRO B 198 GLU B 206 5 9 HELIX 29 AD2 LYS B 208 LEU B 225 1 18 HELIX 30 AD3 ASP B 228 GLN B 242 1 15 HELIX 31 AD4 LEU B 256 ARG B 276 1 21 HELIX 32 AD5 HIS B 283 THR B 291 1 9 HELIX 33 AD6 SER B 293 GLY B 310 1 18 HELIX 34 AD7 ASN B 311 HIS B 322 1 12 HELIX 35 AD8 HIS B 322 GLN B 329 1 8 HELIX 36 AD9 LEU B 331 ASN B 355 1 25 HELIX 37 AE1 LYS B 364 LEU B 366 5 3 HELIX 38 AE2 ASP B 379 SER B 397 1 19 HELIX 39 AE3 ALA C 44 THR C 48 5 5 HELIX 40 AE4 ASP C 71 ASN C 88 1 18 SHEET 1 AA1 3 VAL A 397 ASN A 398 0 SHEET 2 AA1 3 SER A 440 LEU A 445 -1 O LEU A 445 N VAL A 397 SHEET 3 AA1 3 ILE A 427 ILE A 432 -1 N ILE A 432 O SER A 440 SHEET 1 AA2 2 TYR B 278 PRO B 279 0 SHEET 2 AA2 2 TRP C 60 GLU C 61 -1 O GLU C 61 N TYR B 278 SHEET 1 AA3 3 ILE B 360 PRO B 362 0 SHEET 2 AA3 3 CYS B 410 PHE B 413 -1 O ILE B 411 N MSE B 361 SHEET 3 AA3 3 ALA B 402 SER B 405 -1 N TYR B 403 O VAL B 412 LINK C LYS A 220 N MSE A 221 1555 1555 1.33 LINK C MSE A 221 N TYR A 222 1555 1555 1.34 LINK C LEU A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N ASP A 227 1555 1555 1.33 LINK C SER A 245 N MSE A 246 1555 1555 1.33 LINK C MSE A 246 N ARG A 247 1555 1555 1.34 LINK C GLN A 253 N MSE A 254 1555 1555 1.33 LINK C MSE A 254 N ILE A 255 1555 1555 1.33 LINK C ILE A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N ALA A 289 1555 1555 1.34 LINK C SER A 312 N MSE A 313 1555 1555 1.33 LINK C MSE A 313 N LEU A 314 1555 1555 1.34 LINK C LYS A 343 N MSE A 344 1555 1555 1.33 LINK C MSE A 344 N ILE A 345 1555 1555 1.33 LINK C ASP A 350 N MSE A 351 1555 1555 1.33 LINK C MSE A 351 N LYS A 352 1555 1555 1.34 LINK C PHE A 360 N MSE A 361 1555 1555 1.33 LINK C MSE A 361 N LYS A 362 1555 1555 1.33 LINK C VAL B 110 N MSE B 111 1555 1555 1.32 LINK C MSE B 111 N ALA B 112 1555 1555 1.33 LINK C TYR B 161 N MSE B 162 1555 1555 1.33 LINK C MSE B 162 N PHE B 163 1555 1555 1.33 LINK C ASP B 178 N MSE B 179 1555 1555 1.33 LINK C MSE B 179 N ILE B 180 1555 1555 1.33 LINK C ALA B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N GLU B 206 1555 1555 1.33 LINK C PRO B 244 N MSE B 245 1555 1555 1.33 LINK C MSE B 245 N LEU B 246 1555 1555 1.33 LINK C GLN B 259 N MSE B 260 1555 1555 1.33 LINK C MSE B 260 N GLU B 261 1555 1555 1.34 LINK C ILE B 263 N MSE B 264 1555 1555 1.33 LINK C MSE B 264 N ILE B 265 1555 1555 1.33 LINK C ILE B 360 N MSE B 361 1555 1555 1.33 LINK C MSE B 361 N PRO B 362 1555 1555 1.33 CRYST1 116.319 116.319 127.347 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008597 0.004964 0.000000 0.00000 SCALE2 0.000000 0.009927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007853 0.00000