HEADER OXIDOREDUCTASE 25-MAY-21 7EWH TITLE CRYSTAL STRUCTURE OF HUMAN PHGDH IN COMPLEX WITH HOMOHARRINGTONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-3-PHOSPHOGLYCERATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-PGDH,2-OXOGLUTARATE REDUCTASE,MALATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.95,1.1.1.399,1.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHGDH, PGDH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS INHIBITOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.HSIEH,Y.S.CHENG,Y.S.LEE,H.C.HUANG,H.F.JUAN REVDAT 3 20-DEC-23 7EWH 1 JRNL REVDAT 2 29-NOV-23 7EWH 1 REMARK REVDAT 1 07-DEC-22 7EWH 0 JRNL AUTH C.H.HSIEH,C.T.HUANG,Y.S.CHENG,C.H.HSU,W.M.HSU,Y.H.CHUNG, JRNL AUTH 2 Y.L.LIU,T.S.YANG,C.Y.CHIEN,Y.H.LEE,H.C.HUANG,H.F.JUAN JRNL TITL HOMOHARRINGTONINE AS A PHGDH INHIBITOR: UNRAVELING METABOLIC JRNL TITL 2 DEPENDENCIES AND DEVELOPING A POTENT THERAPEUTIC STRATEGY JRNL TITL 3 FOR HIGH-RISK NEUROBLASTOMA. JRNL REF BIOMED PHARMACOTHER V. 166 15429 2023 JRNL REFN ESSN 1950-6007 JRNL PMID 37673018 JRNL DOI 10.1016/J.BIOPHA.2023.115429 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 3 NUMBER OF REFLECTIONS : 9221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.348 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.180 REMARK 3 FREE R VALUE TEST SET COUNT : 939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5550 - 5.7044 0.97 1536 171 0.2271 0.3117 REMARK 3 2 5.7044 - 4.5343 0.93 1459 162 0.2517 0.3195 REMARK 3 3 4.5343 - 3.9630 0.89 1372 157 0.2146 0.3316 REMARK 3 4 3.9630 - 3.6015 0.83 1283 147 0.2187 0.3873 REMARK 3 5 3.6015 - 3.3439 0.70 1087 124 0.2548 0.3826 REMARK 3 6 3.3439 - 3.1470 0.60 932 108 0.2847 0.4520 REMARK 3 7 3.1470 - 2.9900 0.40 613 70 0.2870 0.4160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.580 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 1828 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9221 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 27.555 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 76.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.15900 REMARK 200 FOR THE DATA SET : 9.0020 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2G76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM MMT BUFFER, PH 7.0 WITH 30% REMARK 280 PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.31950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 283 OG SER B 286 2.00 REMARK 500 O LEU A 283 NH2 ARG B 118 2.11 REMARK 500 NZ LYS A 128 O VAL B 272 2.17 REMARK 500 O LEU A 209 N THR A 213 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 89 CB ARG A 89 CG -0.197 REMARK 500 VAL B 29 CB VAL B 29 CG2 -0.249 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 89 CG - CD - NE ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 89 NH1 - CZ - NH2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 89 NE - CZ - NH2 ANGL. DEV. = -12.8 DEGREES REMARK 500 CYS A 115 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 293 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU B 9 CA - CB - CG ANGL. DEV. = -25.2 DEGREES REMARK 500 LYS B 32 CD - CE - NZ ANGL. DEV. = -24.8 DEGREES REMARK 500 LEU B 84 CB - CG - CD1 ANGL. DEV. = -20.8 DEGREES REMARK 500 LEU B 84 CB - CG - CD2 ANGL. DEV. = 15.5 DEGREES REMARK 500 LEU B 93 CB - CG - CD2 ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG B 118 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 LEU B 190 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 SER B 250 CB - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 ASP B 304 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 6 27.76 -154.91 REMARK 500 SER A 11 22.09 -73.81 REMARK 500 ASP A 24 42.84 -90.13 REMARK 500 GLU A 31 39.70 -96.64 REMARK 500 GLN A 33 -57.05 -164.65 REMARK 500 ASN A 34 10.02 -35.67 REMARK 500 SER A 36 -168.28 -65.03 REMARK 500 GLU A 39 -16.91 -149.87 REMARK 500 ARG A 53 -49.65 -134.21 REMARK 500 SER A 54 -61.56 -148.14 REMARK 500 THR A 56 73.67 43.35 REMARK 500 THR A 59 -174.98 -66.54 REMARK 500 GLN A 70 -17.09 -142.28 REMARK 500 ASP A 80 31.14 -98.30 REMARK 500 ASN A 81 -1.26 -155.67 REMARK 500 ASN A 96 -166.56 -126.22 REMARK 500 GLU A 133 71.87 -101.29 REMARK 500 PHE A 137 51.91 -104.95 REMARK 500 LEU A 152 -167.05 -116.59 REMARK 500 ARG A 154 -73.03 -57.01 REMARK 500 SER A 184 0.54 -52.54 REMARK 500 PHE A 185 34.46 -143.94 REMARK 500 THR A 206 136.87 -33.36 REMARK 500 LYS A 225 -74.70 -2.00 REMARK 500 LYS A 226 152.68 137.78 REMARK 500 ALA A 234 -112.19 -112.14 REMARK 500 GLU A 263 -74.99 -76.71 REMARK 500 GLU A 264 -114.91 154.56 REMARK 500 SER A 286 64.57 -107.24 REMARK 500 VAL B 8 -146.92 -119.01 REMARK 500 ASP B 24 24.20 -69.49 REMARK 500 GLU B 31 40.84 -89.08 REMARK 500 GLN B 33 96.81 148.97 REMARK 500 LEU B 35 -145.67 -110.60 REMARK 500 SER B 36 -71.55 -179.56 REMARK 500 GLU B 39 -16.19 -173.71 REMARK 500 LEU B 44 -163.05 -66.20 REMARK 500 GLN B 45 -25.35 66.06 REMARK 500 ASP B 46 -142.42 -128.84 REMARK 500 CYS B 47 161.83 70.62 REMARK 500 SER B 54 -19.68 141.76 REMARK 500 LYS B 57 84.12 -61.36 REMARK 500 THR B 59 -172.68 -59.31 REMARK 500 ALA B 66 72.45 -102.46 REMARK 500 GLN B 70 -30.84 -150.05 REMARK 500 THR B 77 135.68 -13.87 REMARK 500 ASP B 80 33.71 -94.50 REMARK 500 ASN B 81 -0.75 -156.62 REMARK 500 LYS B 90 -94.50 -96.88 REMARK 500 GLN B 119 46.34 97.03 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 34 LEU A 35 -134.18 REMARK 500 LYS B 7 VAL B 8 -144.74 REMARK 500 ASN B 34 LEU B 35 -147.12 REMARK 500 LEU B 69 GLN B 70 136.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HMT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HMT B 400 DBREF 7EWH A 5 306 UNP O43175 SERA_HUMAN 6 307 DBREF 7EWH B 5 306 UNP O43175 SERA_HUMAN 6 307 SEQRES 1 A 302 LEU ARG LYS VAL LEU ILE SER ASP SER LEU ASP PRO CYS SEQRES 2 A 302 CYS ARG LYS ILE LEU GLN ASP GLY GLY LEU GLN VAL VAL SEQRES 3 A 302 GLU LYS GLN ASN LEU SER LYS GLU GLU LEU ILE ALA GLU SEQRES 4 A 302 LEU GLN ASP CYS GLU GLY LEU ILE VAL ARG SER ALA THR SEQRES 5 A 302 LYS VAL THR ALA ASP VAL ILE ASN ALA ALA GLU LYS LEU SEQRES 6 A 302 GLN VAL VAL GLY ARG ALA GLY THR GLY VAL ASP ASN VAL SEQRES 7 A 302 ASP LEU GLU ALA ALA THR ARG LYS GLY ILE LEU VAL MET SEQRES 8 A 302 ASN THR PRO ASN GLY ASN SER LEU SER ALA ALA GLU LEU SEQRES 9 A 302 THR CYS GLY MET ILE MET CYS LEU ALA ARG GLN ILE PRO SEQRES 10 A 302 GLN ALA THR ALA SER MET LYS ASP GLY LYS TRP GLU ARG SEQRES 11 A 302 LYS LYS PHE MET GLY THR GLU LEU ASN GLY LYS THR LEU SEQRES 12 A 302 GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG GLU VAL ALA SEQRES 13 A 302 THR ARG MET GLN SER PHE GLY MET LYS THR ILE GLY TYR SEQRES 14 A 302 ASP PRO ILE ILE SER PRO GLU VAL SER ALA SER PHE GLY SEQRES 15 A 302 VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP PRO LEU CYS SEQRES 16 A 302 ASP PHE ILE THR VAL HIS THR PRO LEU LEU PRO SER THR SEQRES 17 A 302 THR GLY LEU LEU ASN ASP ASN THR PHE ALA GLN CYS LYS SEQRES 18 A 302 LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG GLY GLY ILE SEQRES 19 A 302 VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU GLN SER GLY SEQRES 20 A 302 GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE THR GLU GLU SEQRES 21 A 302 PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS GLU ASN VAL SEQRES 22 A 302 ILE SER CYS PRO HIS LEU GLY ALA SER THR LYS GLU ALA SEQRES 23 A 302 GLN SER ARG CYS GLY GLU GLU ILE ALA VAL GLN PHE VAL SEQRES 24 A 302 ASP MET VAL SEQRES 1 B 302 LEU ARG LYS VAL LEU ILE SER ASP SER LEU ASP PRO CYS SEQRES 2 B 302 CYS ARG LYS ILE LEU GLN ASP GLY GLY LEU GLN VAL VAL SEQRES 3 B 302 GLU LYS GLN ASN LEU SER LYS GLU GLU LEU ILE ALA GLU SEQRES 4 B 302 LEU GLN ASP CYS GLU GLY LEU ILE VAL ARG SER ALA THR SEQRES 5 B 302 LYS VAL THR ALA ASP VAL ILE ASN ALA ALA GLU LYS LEU SEQRES 6 B 302 GLN VAL VAL GLY ARG ALA GLY THR GLY VAL ASP ASN VAL SEQRES 7 B 302 ASP LEU GLU ALA ALA THR ARG LYS GLY ILE LEU VAL MET SEQRES 8 B 302 ASN THR PRO ASN GLY ASN SER LEU SER ALA ALA GLU LEU SEQRES 9 B 302 THR CYS GLY MET ILE MET CYS LEU ALA ARG GLN ILE PRO SEQRES 10 B 302 GLN ALA THR ALA SER MET LYS ASP GLY LYS TRP GLU ARG SEQRES 11 B 302 LYS LYS PHE MET GLY THR GLU LEU ASN GLY LYS THR LEU SEQRES 12 B 302 GLY ILE LEU GLY LEU GLY ARG ILE GLY ARG GLU VAL ALA SEQRES 13 B 302 THR ARG MET GLN SER PHE GLY MET LYS THR ILE GLY TYR SEQRES 14 B 302 ASP PRO ILE ILE SER PRO GLU VAL SER ALA SER PHE GLY SEQRES 15 B 302 VAL GLN GLN LEU PRO LEU GLU GLU ILE TRP PRO LEU CYS SEQRES 16 B 302 ASP PHE ILE THR VAL HIS THR PRO LEU LEU PRO SER THR SEQRES 17 B 302 THR GLY LEU LEU ASN ASP ASN THR PHE ALA GLN CYS LYS SEQRES 18 B 302 LYS GLY VAL ARG VAL VAL ASN CYS ALA ARG GLY GLY ILE SEQRES 19 B 302 VAL ASP GLU GLY ALA LEU LEU ARG ALA LEU GLN SER GLY SEQRES 20 B 302 GLN CYS ALA GLY ALA ALA LEU ASP VAL PHE THR GLU GLU SEQRES 21 B 302 PRO PRO ARG ASP ARG ALA LEU VAL ASP HIS GLU ASN VAL SEQRES 22 B 302 ILE SER CYS PRO HIS LEU GLY ALA SER THR LYS GLU ALA SEQRES 23 B 302 GLN SER ARG CYS GLY GLU GLU ILE ALA VAL GLN PHE VAL SEQRES 24 B 302 ASP MET VAL HET HMT A 400 39 HET HMT B 400 39 HETNAM HMT (3BETA)-O~3~-[(2R)-2,6-DIHYDROXY-2-(2-METHOXY-2- HETNAM 2 HMT OXOETHYL)-6-METHYLHEPTANOYL]CEPHALOTAXINE HETSYN HMT HOMOHARRINGTONINE; CEPHALOTAXINE; [3(R)]-4-METHYL 2- HETSYN 2 HMT HYDROXY-2-(4-HYDROXY-4-METHYLPENTYL)BUTANEDIOATE FORMUL 3 HMT 2(C29 H39 N O9) FORMUL 5 HOH *24(H2 O) HELIX 1 AA1 PRO A 16 ASP A 24 1 9 HELIX 2 AA2 GLU A 39 LEU A 44 1 6 HELIX 3 AA3 LEU A 84 ARG A 89 1 6 HELIX 4 AA4 ASN A 101 GLN A 119 1 19 HELIX 5 AA5 GLN A 119 LYS A 128 1 10 HELIX 6 AA6 GLY A 153 SER A 165 1 13 HELIX 7 AA7 SER A 178 SER A 184 1 7 HELIX 8 AA8 PRO A 191 TRP A 196 1 6 HELIX 9 AA9 ASN A 219 GLN A 223 5 5 HELIX 10 AB1 ASP A 240 SER A 250 1 11 HELIX 11 AB2 THR A 287 PHE A 302 1 16 HELIX 12 AB3 PRO B 16 ASP B 24 1 9 HELIX 13 AB4 ASN B 101 GLN B 119 1 19 HELIX 14 AB5 GLN B 119 LYS B 128 1 10 HELIX 15 AB6 GLY B 153 GLN B 164 1 12 HELIX 16 AB7 SER B 165 GLY B 167 5 3 HELIX 17 AB8 SER B 178 SER B 184 1 7 HELIX 18 AB9 PRO B 191 TRP B 196 1 6 HELIX 19 AC1 ASN B 217 CYS B 224 1 8 HELIX 20 AC2 ASP B 240 SER B 250 1 11 HELIX 21 AC3 HIS B 282 SER B 286 5 5 HELIX 22 AC4 THR B 287 PHE B 302 1 16 SHEET 1 AA1 2 LYS A 7 LEU A 9 0 SHEET 2 AA1 2 GLN A 28 VAL A 30 1 O GLN A 28 N VAL A 8 SHEET 1 AA2 2 VAL A 71 ARG A 74 0 SHEET 2 AA2 2 LEU A 93 ASN A 96 1 O MET A 95 N VAL A 72 SHEET 1 AA3 7 GLN A 188 GLN A 189 0 SHEET 2 AA3 7 LYS A 169 TYR A 173 1 N GLY A 172 O GLN A 188 SHEET 3 AA3 7 THR A 146 LEU A 150 1 N LEU A 147 O ILE A 171 SHEET 4 AA3 7 PHE A 201 VAL A 204 1 O THR A 203 N GLY A 148 SHEET 5 AA3 7 ARG A 229 ASN A 232 1 O VAL A 231 N ILE A 202 SHEET 6 AA3 7 GLY A 255 LEU A 258 1 O ALA A 257 N ASN A 232 SHEET 7 AA3 7 VAL A 277 ILE A 278 1 O ILE A 278 N LEU A 258 SHEET 1 AA4 2 VAL B 8 LEU B 9 0 SHEET 2 AA4 2 VAL B 29 VAL B 30 1 O VAL B 30 N VAL B 8 SHEET 1 AA5 2 VAL B 72 GLY B 73 0 SHEET 2 AA5 2 VAL B 94 MET B 95 1 O MET B 95 N VAL B 72 SHEET 1 AA6 7 VAL B 187 GLN B 189 0 SHEET 2 AA6 7 LYS B 169 TYR B 173 1 N THR B 170 O GLN B 188 SHEET 3 AA6 7 THR B 146 LEU B 150 1 N ILE B 149 O ILE B 171 SHEET 4 AA6 7 PHE B 201 VAL B 204 1 O THR B 203 N GLY B 148 SHEET 5 AA6 7 VAL B 228 ASN B 232 1 O VAL B 231 N ILE B 202 SHEET 6 AA6 7 CYS B 253 LEU B 258 1 O ALA B 257 N ASN B 232 SHEET 7 AA6 7 VAL B 277 SER B 279 1 O ILE B 278 N LEU B 258 SITE 1 AC1 15 LEU A 150 GLY A 151 LEU A 152 GLY A 153 SITE 2 AC1 15 ARG A 154 ILE A 155 GLY A 156 ASP A 174 SITE 3 AC1 15 PRO A 175 ILE A 176 HIS A 205 THR A 206 SITE 4 AC1 15 PRO A 207 THR A 212 HOH A 506 SITE 1 AC2 11 LEU B 150 GLY B 151 LEU B 152 GLY B 153 SITE 2 AC2 11 ARG B 154 ILE B 155 GLY B 156 ASP B 174 SITE 3 AC2 11 PRO B 175 HIS B 205 THR B 206 CRYST1 43.165 120.639 59.480 90.00 100.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023167 0.000000 0.004385 0.00000 SCALE2 0.000000 0.008289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017111 0.00000 TER 2261 VAL A 306 TER 4522 VAL B 306 HETATM 4523 C18 HMT A 400 -2.849 -12.272 -4.826 1.00 36.76 C HETATM 4524 O3 HMT A 400 -2.274 -13.492 -5.248 1.00 45.11 O HETATM 4525 C2 HMT A 400 -0.877 -13.619 -5.057 1.00 39.80 C HETATM 4526 C1 HMT A 400 -0.233 -14.722 -4.276 1.00 36.60 C HETATM 4527 C9 HMT A 400 1.069 -14.200 -3.714 1.00 37.36 C HETATM 4528 C12 HMT A 400 2.322 -14.929 -4.223 1.00 55.88 C HETATM 4529 C11 HMT A 400 3.418 -14.909 -3.138 1.00 49.98 C HETATM 4530 C10 HMT A 400 2.896 -13.977 -2.032 1.00 30.48 C HETATM 4531 N1 HMT A 400 1.416 -13.930 -2.289 1.00 26.59 N HETATM 4532 C8 HMT A 400 0.381 -13.261 -1.560 1.00 31.17 C HETATM 4533 C7 HMT A 400 -0.085 -12.073 -2.365 1.00 35.55 C HETATM 4534 C6 HMT A 400 1.055 -11.269 -2.968 1.00 39.92 C HETATM 4535 C16 HMT A 400 1.420 -9.904 -2.326 1.00 44.30 C HETATM 4536 C15 HMT A 400 2.591 -9.051 -2.936 1.00 49.72 C HETATM 4537 O2 HMT A 400 3.149 -7.781 -2.564 1.00 55.93 O HETATM 4538 C17 HMT A 400 4.365 -7.734 -3.182 1.00 47.02 C HETATM 4539 O1 HMT A 400 4.265 -8.656 -4.421 1.00 45.58 O HETATM 4540 C14 HMT A 400 3.352 -9.536 -4.131 1.00 48.01 C HETATM 4541 C13 HMT A 400 2.964 -10.926 -4.765 1.00 45.92 C HETATM 4542 C5 HMT A 400 1.803 -11.763 -4.163 1.00 44.83 C HETATM 4543 C4 HMT A 400 1.437 -13.091 -4.778 1.00 41.62 C HETATM 4544 C3 HMT A 400 0.228 -12.840 -5.729 1.00 37.24 C HETATM 4545 O4 HMT A 400 0.022 -11.447 -5.894 1.00 38.59 O HETATM 4546 C19 HMT A 400 -0.045 -10.830 -7.228 1.00 39.03 C HETATM 4547 O5 HMT A 400 -1.011 -10.256 -7.630 1.00 40.94 O HETATM 4548 C20 HMT A 400 1.148 -10.907 -8.166 1.00 37.67 C HETATM 4549 C21 HMT A 400 1.109 -10.013 -9.402 1.00 33.60 C HETATM 4550 C22 HMT A 400 2.511 -9.352 -9.625 1.00 38.45 C HETATM 4551 O8 HMT A 400 3.147 -9.018 -8.672 1.00 37.54 O HETATM 4552 O7 HMT A 400 3.026 -9.110 -10.941 1.00 36.75 O HETATM 4553 C23 HMT A 400 4.410 -9.299 -11.195 1.00 24.24 C HETATM 4554 O6 HMT A 400 2.257 -10.538 -7.396 1.00 34.82 O HETATM 4555 C24 HMT A 400 1.158 -12.349 -8.708 1.00 43.54 C HETATM 4556 C25 HMT A 400 -0.154 -12.573 -9.539 1.00 45.07 C HETATM 4557 C26 HMT A 400 -1.193 -13.463 -8.778 1.00 43.87 C HETATM 4558 C27 HMT A 400 -0.951 -14.959 -9.158 1.00 58.02 C HETATM 4559 C28 HMT A 400 0.045 -15.585 -8.132 1.00 51.86 C HETATM 4560 C29 HMT A 400 -2.326 -15.703 -9.155 1.00 43.65 C HETATM 4561 O9 HMT A 400 -0.367 -15.015 -10.451 1.00 58.12 O HETATM 4562 C18 HMT B 400 2.406 13.389 27.173 1.00 55.73 C HETATM 4563 O3 HMT B 400 3.604 13.631 27.892 1.00 54.80 O HETATM 4564 C2 HMT B 400 4.353 12.480 28.182 1.00 48.86 C HETATM 4565 C1 HMT B 400 5.805 12.327 27.831 1.00 54.51 C HETATM 4566 C9 HMT B 400 6.138 10.855 27.748 1.00 43.05 C HETATM 4567 C12 HMT B 400 7.170 10.209 28.690 1.00 47.39 C HETATM 4568 C11 HMT B 400 7.981 9.139 27.935 1.00 35.15 C HETATM 4569 C10 HMT B 400 7.201 8.913 26.636 1.00 30.11 C HETATM 4570 N1 HMT B 400 6.396 10.178 26.491 1.00 25.99 N HETATM 4571 C8 HMT B 400 5.607 10.825 25.478 1.00 41.44 C HETATM 4572 C7 HMT B 400 4.167 10.497 25.793 1.00 44.55 C HETATM 4573 C6 HMT B 400 3.965 9.195 26.563 1.00 45.31 C HETATM 4574 C16 HMT B 400 3.309 7.979 25.875 1.00 42.01 C HETATM 4575 C15 HMT B 400 3.119 6.652 26.691 1.00 47.96 C HETATM 4576 O2 HMT B 400 2.573 5.363 26.376 1.00 57.78 O HETATM 4577 C17 HMT B 400 2.177 4.876 27.592 1.00 55.05 C HETATM 4578 O1 HMT B 400 3.288 5.347 28.555 1.00 46.46 O HETATM 4579 C14 HMT B 400 3.551 6.539 28.122 1.00 47.27 C HETATM 4580 C13 HMT B 400 4.200 7.784 28.802 1.00 49.93 C HETATM 4581 C5 HMT B 400 4.386 9.081 27.992 1.00 49.20 C HETATM 4582 C4 HMT B 400 5.035 10.239 28.685 1.00 48.73 C HETATM 4583 C3 HMT B 400 3.966 11.321 29.070 1.00 43.98 C HETATM 4584 O4 HMT B 400 2.640 10.855 28.905 1.00 48.77 O HETATM 4585 C19 HMT B 400 1.670 10.805 30.025 1.00 57.04 C HETATM 4586 O5 HMT B 400 0.594 11.336 29.957 1.00 53.15 O HETATM 4587 C20 HMT B 400 2.000 10.066 31.340 1.00 50.17 C HETATM 4588 C21 HMT B 400 0.825 9.711 32.254 1.00 39.63 C HETATM 4589 C22 HMT B 400 1.313 8.396 32.953 1.00 43.79 C HETATM 4590 O8 HMT B 400 1.719 7.518 32.285 1.00 40.99 O HETATM 4591 O7 HMT B 400 1.341 8.152 34.345 1.00 47.22 O HETATM 4592 C23 HMT B 400 1.924 6.905 34.692 1.00 27.49 C HETATM 4593 O6 HMT B 400 2.656 8.856 31.032 1.00 38.55 O HETATM 4594 C24 HMT B 400 2.932 10.985 32.171 1.00 68.52 C HETATM 4595 C25 HMT B 400 2.375 12.463 32.300 1.00 68.96 C HETATM 4596 C26 HMT B 400 3.136 13.462 31.345 1.00 67.57 C HETATM 4597 C27 HMT B 400 4.563 13.889 31.860 1.00 70.99 C HETATM 4598 C28 HMT B 400 5.705 13.307 30.986 1.00 55.48 C HETATM 4599 C29 HMT B 400 4.616 15.442 31.796 1.00 73.86 C HETATM 4600 O9 HMT B 400 4.807 13.459 33.187 1.00 52.21 O HETATM 4601 O HOH A 501 0.002 -16.231 1.673 1.00 44.46 O HETATM 4602 O HOH A 502 -2.439 -1.286 -13.726 1.00 20.69 O HETATM 4603 O HOH A 503 -6.515 -30.806 -2.475 1.00 55.66 O HETATM 4604 O HOH A 504 21.494 7.522 19.205 1.00 26.72 O HETATM 4605 O HOH A 505 32.235 -0.476 11.312 1.00 21.44 O HETATM 4606 O HOH A 506 3.856 -6.583 -9.986 1.00 30.19 O HETATM 4607 O HOH A 507 15.398 8.078 -12.424 1.00 13.33 O HETATM 4608 O HOH A 508 23.886 5.258 1.310 1.00 27.63 O HETATM 4609 O HOH A 509 23.547 -25.520 0.271 1.00 46.44 O HETATM 4610 O HOH A 510 32.002 -16.083 6.350 1.00 39.05 O HETATM 4611 O HOH A 511 -8.336 -5.498 -0.575 1.00 26.48 O HETATM 4612 O HOH A 512 30.463 13.048 15.018 1.00 37.97 O HETATM 4613 O HOH B 501 18.459 4.133 33.829 1.00 27.90 O HETATM 4614 O HOH B 502 -4.012 -13.826 13.892 1.00 27.03 O HETATM 4615 O HOH B 503 -2.159 -14.781 14.946 1.00 35.45 O HETATM 4616 O HOH B 504 33.721 18.878 18.145 1.00107.70 O HETATM 4617 O HOH B 505 30.313 -6.157 32.413 1.00 44.98 O HETATM 4618 O HOH B 506 -0.636 -14.153 28.724 1.00 25.19 O HETATM 4619 O HOH B 507 2.804 -15.647 24.706 1.00 32.93 O HETATM 4620 O HOH B 508 -8.187 -9.225 42.012 1.00 29.94 O HETATM 4621 O HOH B 509 28.241 -13.405 12.862 1.00 29.66 O HETATM 4622 O HOH B 510 -11.407 -5.528 39.979 1.00 42.07 O HETATM 4623 O HOH B 511 17.343 36.504 31.128 1.00 49.62 O HETATM 4624 O HOH B 512 23.926 -18.857 6.034 1.00 31.12 O CONECT 4523 4524 CONECT 4524 4523 4525 CONECT 4525 4524 4526 4544 CONECT 4526 4525 4527 CONECT 4527 4526 4528 4531 4543 CONECT 4528 4527 4529 CONECT 4529 4528 4530 CONECT 4530 4529 4531 CONECT 4531 4527 4530 4532 CONECT 4532 4531 4533 CONECT 4533 4532 4534 CONECT 4534 4533 4535 4542 CONECT 4535 4534 4536 CONECT 4536 4535 4537 4540 CONECT 4537 4536 4538 CONECT 4538 4537 4539 CONECT 4539 4538 4540 CONECT 4540 4536 4539 4541 CONECT 4541 4540 4542 CONECT 4542 4534 4541 4543 CONECT 4543 4527 4542 4544 CONECT 4544 4525 4543 4545 CONECT 4545 4544 4546 CONECT 4546 4545 4547 4548 CONECT 4547 4546 CONECT 4548 4546 4549 4554 4555 CONECT 4549 4548 4550 CONECT 4550 4549 4551 4552 CONECT 4551 4550 CONECT 4552 4550 4553 CONECT 4553 4552 CONECT 4554 4548 CONECT 4555 4548 4556 CONECT 4556 4555 4557 CONECT 4557 4556 4558 CONECT 4558 4557 4559 4560 4561 CONECT 4559 4558 CONECT 4560 4558 CONECT 4561 4558 CONECT 4562 4563 CONECT 4563 4562 4564 CONECT 4564 4563 4565 4583 CONECT 4565 4564 4566 CONECT 4566 4565 4567 4570 4582 CONECT 4567 4566 4568 CONECT 4568 4567 4569 CONECT 4569 4568 4570 CONECT 4570 4566 4569 4571 CONECT 4571 4570 4572 CONECT 4572 4571 4573 CONECT 4573 4572 4574 4581 CONECT 4574 4573 4575 CONECT 4575 4574 4576 4579 CONECT 4576 4575 4577 CONECT 4577 4576 4578 CONECT 4578 4577 4579 CONECT 4579 4575 4578 4580 CONECT 4580 4579 4581 CONECT 4581 4573 4580 4582 CONECT 4582 4566 4581 4583 CONECT 4583 4564 4582 4584 CONECT 4584 4583 4585 CONECT 4585 4584 4586 4587 CONECT 4586 4585 CONECT 4587 4585 4588 4593 4594 CONECT 4588 4587 4589 CONECT 4589 4588 4590 4591 CONECT 4590 4589 CONECT 4591 4589 4592 CONECT 4592 4591 CONECT 4593 4587 CONECT 4594 4587 4595 CONECT 4595 4594 4596 CONECT 4596 4595 4597 CONECT 4597 4596 4598 4599 4600 CONECT 4598 4597 CONECT 4599 4597 CONECT 4600 4597 MASTER 355 0 2 22 22 0 7 6 4622 2 78 48 END