HEADER TRANSCRIPTION 25-MAY-21 7EWM TITLE NATIVE CRYSTAL STRUCTURE OF S. CEREVISIAE CSN12 IN COMPLEX WITH THP3 TITLE 2 AND SEM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN THP3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THO-RELATED PROTEIN 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: COP9 SIGNALOSOME COMPLEX SUBUNIT 12; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 26S PROTEASOME COMPLEX SUBUNIT SEM1; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: THP3, YPR045C, YP9499.03C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 9 ORGANISM_TAXID: 559292; SOURCE 10 GENE: CSN12, YJR084W, J1860; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 GENE: SEM1, DSH1, YDR363W-A; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, NUCLEIC ACID BINDING, TRANSCRIPTION, MRNA SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR Z.KUANG,L.NIU REVDAT 3 29-NOV-23 7EWM 1 REMARK REVDAT 2 05-APR-23 7EWM 1 JRNL REVDAT 1 07-SEP-22 7EWM 0 JRNL AUTH Z.KUANG,J.KE,J.HONG,Z.ZHU,L.NIU JRNL TITL STRUCTURAL ASSEMBLY OF THE NUCLEIC-ACID-BINDING JRNL TITL 2 THP3-CSN12-SEM1 COMPLEX FUNCTIONING IN MRNA SPLICING. JRNL REF NUCLEIC ACIDS RES. V. 50 8882 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35904806 JRNL DOI 10.1093/NAR/GKAC634 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2900 - 5.7900 0.99 2723 163 0.2008 0.2205 REMARK 3 2 5.7900 - 4.6000 1.00 2688 120 0.2193 0.2274 REMARK 3 3 4.6000 - 4.0200 1.00 2598 160 0.1902 0.2251 REMARK 3 4 4.0200 - 3.6500 1.00 2609 146 0.2267 0.2636 REMARK 3 5 3.6500 - 3.3900 1.00 2610 128 0.2412 0.2918 REMARK 3 6 3.3900 - 3.1900 1.00 2603 151 0.2608 0.2878 REMARK 3 7 3.1900 - 3.0300 1.00 2535 164 0.2803 0.3421 REMARK 3 8 3.0300 - 2.9000 1.00 2625 123 0.3062 0.3785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.398 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6225 REMARK 3 ANGLE : 0.878 8395 REMARK 3 CHIRALITY : 0.051 931 REMARK 3 PLANARITY : 0.006 1069 REMARK 3 DIHEDRAL : 18.830 3810 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6049 34.3596 -12.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.3460 T22: 0.5811 REMARK 3 T33: 0.5365 T12: 0.0130 REMARK 3 T13: 0.0082 T23: -0.0471 REMARK 3 L TENSOR REMARK 3 L11: 0.0153 L22: 0.0058 REMARK 3 L33: 0.0093 L12: -0.0144 REMARK 3 L13: 0.0002 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.1234 S12: 0.0554 S13: 0.0249 REMARK 3 S21: 0.0075 S22: -0.1444 S23: 0.0705 REMARK 3 S31: -0.0173 S32: -0.0410 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6028 34.0289 -11.7313 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.3808 REMARK 3 T33: 0.3331 T12: -0.0409 REMARK 3 T13: 0.0128 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.0113 L22: 0.0060 REMARK 3 L33: 0.0100 L12: -0.0094 REMARK 3 L13: 0.0043 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: -0.0051 S13: -0.0757 REMARK 3 S21: 0.0400 S22: -0.0800 S23: 0.1044 REMARK 3 S31: 0.0040 S32: 0.0059 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 368 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9906 31.5867 -16.7856 REMARK 3 T TENSOR REMARK 3 T11: 0.3907 T22: 0.4348 REMARK 3 T33: 0.3379 T12: -0.0052 REMARK 3 T13: 0.0379 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.0195 L22: 0.0053 REMARK 3 L33: 0.0122 L12: -0.0198 REMARK 3 L13: -0.0147 L23: -0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: 0.0711 S13: 0.0038 REMARK 3 S21: 0.0034 S22: -0.0810 S23: -0.1374 REMARK 3 S31: 0.0466 S32: 0.0153 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 369 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3784 40.4173 -3.7127 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.4480 REMARK 3 T33: 0.3524 T12: -0.0189 REMARK 3 T13: -0.0062 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.0011 L22: 0.0031 REMARK 3 L33: 0.0034 L12: -0.0012 REMARK 3 L13: -0.0027 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0229 S13: 0.0543 REMARK 3 S21: -0.0098 S22: 0.0745 S23: 0.0970 REMARK 3 S31: 0.0044 S32: 0.0084 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 432 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.1471 50.8105 2.7118 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.2633 REMARK 3 T33: 0.2289 T12: -0.1570 REMARK 3 T13: -0.0595 T23: -0.0929 REMARK 3 L TENSOR REMARK 3 L11: 0.0037 L22: 0.0123 REMARK 3 L33: 0.0046 L12: -0.0064 REMARK 3 L13: 0.0003 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0951 S13: 0.0938 REMARK 3 S21: 0.0041 S22: 0.0447 S23: 0.0122 REMARK 3 S31: -0.1309 S32: 0.0040 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 433 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.7493 50.0634 5.2771 REMARK 3 T TENSOR REMARK 3 T11: 0.4672 T22: 0.5669 REMARK 3 T33: 0.6598 T12: 0.0233 REMARK 3 T13: 0.0528 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.0031 L22: 0.0000 REMARK 3 L33: -0.0013 L12: 0.0012 REMARK 3 L13: 0.0013 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0823 S12: -0.0038 S13: 0.0229 REMARK 3 S21: -0.0064 S22: 0.0609 S23: -0.0121 REMARK 3 S31: -0.0052 S32: 0.0263 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6752 -15.3790 -4.6989 REMARK 3 T TENSOR REMARK 3 T11: 1.3618 T22: 1.0809 REMARK 3 T33: 1.1465 T12: -0.0243 REMARK 3 T13: 0.0588 T23: 0.2629 REMARK 3 L TENSOR REMARK 3 L11: 0.0008 L22: 0.0082 REMARK 3 L33: -0.0053 L12: 0.0133 REMARK 3 L13: -0.0005 L23: 0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: -0.0464 S13: -0.0967 REMARK 3 S21: 0.0075 S22: -0.0648 S23: 0.0582 REMARK 3 S31: 0.0241 S32: -0.0547 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6558 4.1320 -4.1971 REMARK 3 T TENSOR REMARK 3 T11: -0.9356 T22: -0.8504 REMARK 3 T33: -0.9669 T12: 1.6277 REMARK 3 T13: 1.5930 T23: -1.1842 REMARK 3 L TENSOR REMARK 3 L11: -0.0290 L22: -0.0309 REMARK 3 L33: -0.0516 L12: 0.0131 REMARK 3 L13: -0.0939 L23: 0.0134 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.1965 S13: -0.4738 REMARK 3 S21: 0.1841 S22: 0.1822 S23: 0.3647 REMARK 3 S31: 0.3468 S32: -0.1095 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9064 31.4271 -10.0453 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.6909 REMARK 3 T33: 0.4789 T12: -0.0300 REMARK 3 T13: -0.0538 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.0123 L22: 0.0401 REMARK 3 L33: 0.0160 L12: 0.0004 REMARK 3 L13: -0.0040 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.1238 S13: 0.1300 REMARK 3 S21: -0.0822 S22: 0.1771 S23: -0.1073 REMARK 3 S31: 0.0959 S32: 0.1959 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 32 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5596 -5.3903 -8.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.7867 T22: 0.7285 REMARK 3 T33: 0.8913 T12: 0.1931 REMARK 3 T13: 0.0583 T23: 0.1810 REMARK 3 L TENSOR REMARK 3 L11: 0.0016 L22: 0.0023 REMARK 3 L33: -0.0020 L12: 0.0014 REMARK 3 L13: -0.0012 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.0134 S13: -0.0212 REMARK 3 S21: 0.0044 S22: -0.0215 S23: 0.0276 REMARK 3 S31: 0.0424 S32: 0.0159 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 53 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8733 -2.9518 -3.9377 REMARK 3 T TENSOR REMARK 3 T11: 1.1692 T22: 1.1664 REMARK 3 T33: 1.1479 T12: 0.0596 REMARK 3 T13: 0.0434 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.0147 REMARK 3 L33: 0.0321 L12: 0.0017 REMARK 3 L13: -0.0064 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0000 S13: 0.0005 REMARK 3 S21: 0.0001 S22: -0.0036 S23: 0.0001 REMARK 3 S31: 0.0027 S32: -0.0042 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 58 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.1246 15.0952 -9.8737 REMARK 3 T TENSOR REMARK 3 T11: 0.6256 T22: 0.7351 REMARK 3 T33: 0.8893 T12: 0.2500 REMARK 3 T13: -0.1155 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.0021 L22: 0.0004 REMARK 3 L33: -0.0006 L12: -0.0041 REMARK 3 L13: 0.0007 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.0104 S13: -0.0286 REMARK 3 S21: 0.0033 S22: 0.0100 S23: -0.0016 REMARK 3 S31: 0.0119 S32: -0.0009 S33: 0.0000 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.6477 34.3805 -20.1071 REMARK 3 T TENSOR REMARK 3 T11: 0.6642 T22: 0.8506 REMARK 3 T33: 0.8386 T12: -0.0638 REMARK 3 T13: 0.1605 T23: -0.2083 REMARK 3 L TENSOR REMARK 3 L11: 0.0035 L22: 0.0020 REMARK 3 L33: 0.0004 L12: -0.0020 REMARK 3 L13: -0.0028 L23: 0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.0259 S13: -0.0200 REMARK 3 S21: -0.0148 S22: -0.0189 S23: -0.0066 REMARK 3 S31: 0.0053 S32: -0.0181 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7EWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1300022415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7EWF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 100 MM SODIUM MALONATE REMARK 280 BUFFER (PH 5.0) AND 3% METHANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.55000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.27500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.27500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 HIS A 184 REMARK 465 MET A 185 REMARK 465 LYS A 186 REMARK 465 MET A 459 REMARK 465 LYS A 460 REMARK 465 SER A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 ILE A 464 REMARK 465 ASP A 465 REMARK 465 ILE A 466 REMARK 465 LYS A 467 REMARK 465 GLY A 468 REMARK 465 GLN A 469 REMARK 465 LYS A 470 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 370 REMARK 465 GLN B 371 REMARK 465 HIS B 372 REMARK 465 ASP B 373 REMARK 465 SER B 374 REMARK 465 SER B 375 REMARK 465 ALA B 376 REMARK 465 ASN B 377 REMARK 465 GLU B 378 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 ASP C 4 REMARK 465 VAL C 5 REMARK 465 ALA C 6 REMARK 465 ALA C 7 REMARK 465 ALA C 8 REMARK 465 GLN C 9 REMARK 465 ALA C 10 REMARK 465 GLN C 11 REMARK 465 SER C 12 REMARK 465 LYS C 13 REMARK 465 ILE C 14 REMARK 465 ASP C 15 REMARK 465 LEU C 16 REMARK 465 THR C 17 REMARK 465 LYS C 18 REMARK 465 LYS C 19 REMARK 465 LYS C 20 REMARK 465 ASN C 21 REMARK 465 GLU C 22 REMARK 465 GLU C 23 REMARK 465 ILE C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 LYS C 27 REMARK 465 SER C 28 REMARK 465 LEU C 29 REMARK 465 GLU C 30 REMARK 465 GLU C 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 69 153.15 -46.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7EWF RELATED DB: PDB DBREF 7EWM A 186 470 UNP Q12049 THP3_YEAST 186 470 DBREF 7EWM B 1 423 UNP P47130 CSN12_YEAST 1 423 DBREF 7EWM C 1 89 UNP O94742 SEM1_YEAST 1 89 SEQADV 7EWM GLY A 182 UNP Q12049 EXPRESSION TAG SEQADV 7EWM SER A 183 UNP Q12049 EXPRESSION TAG SEQADV 7EWM HIS A 184 UNP Q12049 EXPRESSION TAG SEQADV 7EWM MET A 185 UNP Q12049 EXPRESSION TAG SEQRES 1 A 289 GLY SER HIS MET LYS ILE HIS VAL VAL GLY ARG CYS GLN SEQRES 2 A 289 THR LEU GLU LYS SER TYR LEU ARG LEU THR SER GLU PRO SEQRES 3 A 289 ASN PRO ASP LEU ILE ARG PRO PRO ASN ILE LEU GLN LYS SEQRES 4 A 289 MET TYR CYS LEU LEU MET ASP LYS TYR GLN SER LYS THR SEQRES 5 A 289 ALA THR TYR THR TYR LEU CYS ASP GLN PHE LYS SER MET SEQRES 6 A 289 ARG GLN ASP LEU ARG VAL GLN MET ILE GLU ASN SER PHE SEQRES 7 A 289 THR ILE LYS VAL TYR GLN THR HIS ALA ARG ILE ALA LEU SEQRES 8 A 289 GLU ASN GLY ASP LEU GLY GLU PHE ASN GLN CYS GLN ASN SEQRES 9 A 289 ARG ILE MET ALA LEU PHE GLU ASN PRO THR ILE PRO LYS SEQRES 10 A 289 LYS SER TYR SER GLU PHE ILE CYS TYR SER VAL LEU TYR SEQRES 11 A 289 SER MET LEU THR GLU ASP TYR PRO SER ILE SER HIS LEU SEQRES 12 A 289 LYS LEU LYS LEU ILE ASP ASP GLY SER SER GLU ILE LEU SEQRES 13 A 289 GLU ASP GLU HIS VAL LYS MET ILE PHE GLU LEU SER ASP SEQRES 14 A 289 MET LYS LEU VAL GLY ASN TYR HIS TYR PHE MET LYS ASN SEQRES 15 A 289 TYR LEU LYS LEU HIS LYS PHE GLU LYS CYS LEU ILE ASN SEQRES 16 A 289 SER PHE LEU ASN LEU GLU LYS LEU ILE PHE LEU THR ILE SEQRES 17 A 289 ILE CYS LYS SER TYR ASN GLN VAL ASN LEU ASP PHE VAL SEQRES 18 A 289 LYS SER GLU PHE ASN PHE ASN SER ILE GLU GLU THR THR SEQRES 19 A 289 ASN PHE LEU ASN GLU GLN ASN LEU THR GLU PHE ILE LEU SEQRES 20 A 289 ASN LYS GLN ILE THR ASP SER ASN GLY LYS SER SER ASN SEQRES 21 A 289 ILE LYS ILE LEU ASN THR LYS GLY CYS ARG VAL GLN LEU SEQRES 22 A 289 ILE GLN ASN TYR MET LYS SER LYS LYS ILE ASP ILE LYS SEQRES 23 A 289 GLY GLN LYS SEQRES 1 B 423 MET ASP VAL ASP ILE GLY CYS TYR PHE GLU GLU LYS ARG SEQRES 2 B 423 TYR ASP ASP LYS LEU LEU ASP PHE ILE ARG TYR ASP VAL SEQRES 3 B 423 LYS THR PRO LYS LYS THR LYS TYR ILE LEU GLN ARG PRO SEQRES 4 B 423 THR ALA THR ASP GLU GLU SER VAL ARG LEU GLN ARG PHE SEQRES 5 B 423 TYR GLN LEU GLY VAL ASP LEU LYS LEU LYS TYR SER LYS SEQRES 6 B 423 ARG ARG SER LEU LYS LYS GLN GLY ARG ILE LYS ASN ALA SEQRES 7 B 423 THR GLU GLU LEU LEU ARG LEU ALA ASN GLU GLN LEU LYS SEQRES 8 B 423 LEU PHE ASN ARG ILE VAL GLU ARG GLU THR ASN TRP ILE SEQRES 9 B 423 ILE TYR PRO LEU TRP VAL MET ALA LYS GLN LEU ILE ARG SEQRES 10 B 423 LEU ALA ASN GLU SER SER GLU LEU ASN LYS ASP SER ILE SEQRES 11 B 423 GLU GLU CYS GLY ARG THR ILE HIS ARG SER PHE THR ILE SEQRES 12 B 423 CYS LEU ASN ASP ARG ASN PRO ARG LEU ASN GLU ASN LYS SEQRES 13 B 423 LYS ILE GLY CYS TYR MET PHE ALA ASN LEU GLU PHE SER SEQRES 14 B 423 ILE TYR HIS ARG LEU SER ASN LYS ASP MET ILE LYS ASN SEQRES 15 B 423 LEU VAL LYS VAL LEU GLU SER ARG VAL ASN ALA ARG ASP SEQRES 16 B 423 ILE PRO PRO LEU ASN LYS SER LEU ALA MET GLU HIS LYS SEQRES 17 B 423 SER GLN VAL VAL LEU TYR ASN TYR TYR LEU GLY GLN TYR SEQRES 18 B 423 TYR GLY CYS LEU GLU ASN ASP HIS GLU ARG GLY PHE PHE SEQRES 19 B 423 HIS LEU ASN GLU ALA LEU LEU GLN CYS PRO MET LEU TYR SEQRES 20 B 423 VAL GLU SER THR GLY LYS PHE VAL LEU GLN GLY GLN MET SEQRES 21 B 423 GLU LYS ILE MET ILE LEU LEU VAL PRO LEU ALA LEU LEU SEQRES 22 B 423 THR LYS ARG LEU TYR PRO HIS TRP ASP HIS PRO VAL ILE SEQRES 23 B 423 ALA GLY VAL ILE THR ARG SER LYS ARG LEU SER GLN VAL SEQRES 24 B 423 TYR PRO THR LEU VAL ARG SER VAL ILE SER GLY ASN LEU SEQRES 25 B 423 SER LEU TYR GLU ALA THR ALA ALA SER HIS GLU ARG PHE SEQRES 26 B 423 PHE LEU SER GLN GLY LEU HIS VAL VAL ILE THR LEU LEU SEQRES 27 B 423 ARG GLU VAL VAL PHE THR ARG LEU VAL GLN ARG CYS TRP SEQRES 28 B 423 GLN TRP GLY ASN ASP ARG LYS SER ILE MET PRO LEU LYS SEQRES 29 B 423 ILE LEU LEU ALA THR LYS GLN HIS ASP SER SER ALA ASN SEQRES 30 B 423 GLU ASP GLU GLU GLU GLN LEU ASP ALA LEU GLU CYS ARG SEQRES 31 B 423 LEU ALA SER ALA ILE ALA SER GLY LEU LEU ARG ALA TYR SEQRES 32 B 423 LEU SER HIS SER ASN ARG CYS ILE VAL PHE SER LYS LYS SEQRES 33 B 423 GLU PRO PHE PRO HIS SER LYS SEQRES 1 C 89 MET SER THR ASP VAL ALA ALA ALA GLN ALA GLN SER LYS SEQRES 2 C 89 ILE ASP LEU THR LYS LYS LYS ASN GLU GLU ILE ASN LYS SEQRES 3 C 89 LYS SER LEU GLU GLU ASP ASP GLU PHE GLU ASP PHE PRO SEQRES 4 C 89 ILE ASP THR TRP ALA ASN GLY GLU THR ILE LYS SER ASN SEQRES 5 C 89 ALA VAL THR GLN THR ASN ILE TRP GLU GLU ASN TRP ASP SEQRES 6 C 89 ASP VAL GLU VAL ASP ASP ASP PHE THR ASN GLU LEU LYS SEQRES 7 C 89 ALA GLU LEU ASP ARG TYR LYS ARG GLU ASN GLN FORMUL 4 HOH *4(H2 O) HELIX 1 AA1 PRO A 214 LYS A 232 1 19 HELIX 2 AA2 THR A 235 GLN A 253 1 19 HELIX 3 AA3 ASN A 257 ASN A 274 1 18 HELIX 4 AA4 ASP A 276 GLU A 292 1 17 HELIX 5 AA5 SER A 300 THR A 315 1 16 HELIX 6 AA6 ASP A 317 ASP A 331 1 15 HELIX 7 AA7 SER A 333 GLU A 338 1 6 HELIX 8 AA8 ASP A 339 VAL A 354 1 16 HELIX 9 AA9 ASN A 356 ASN A 363 1 8 HELIX 10 AB1 HIS A 368 ASN A 376 1 9 HELIX 11 AB2 PHE A 378 TYR A 394 1 17 HELIX 12 AB3 LEU A 399 PHE A 406 1 8 HELIX 13 AB4 SER A 410 GLU A 420 1 11 HELIX 14 AB5 GLN A 421 ASN A 422 5 2 HELIX 15 AB6 LEU A 423 GLU A 425 5 3 HELIX 16 AB7 ASN A 446 TYR A 458 1 13 HELIX 17 AB8 CYS B 7 GLU B 11 1 5 HELIX 18 AB9 ASP B 15 ARG B 23 1 9 HELIX 19 AC1 ASP B 43 LEU B 69 1 27 HELIX 20 AC2 ILE B 75 GLU B 98 1 24 HELIX 21 AC3 THR B 101 TRP B 103 5 3 HELIX 22 AC4 ILE B 104 GLU B 121 1 18 HELIX 23 AC5 SER B 129 ASN B 146 1 18 HELIX 24 AC6 ASN B 155 ILE B 158 5 4 HELIX 25 AC7 GLY B 159 LEU B 174 1 16 HELIX 26 AC8 ASN B 176 ALA B 193 1 18 HELIX 27 AC9 PRO B 198 HIS B 207 5 10 HELIX 28 AD1 LYS B 208 LEU B 225 1 18 HELIX 29 AD2 ASP B 228 GLN B 242 1 15 HELIX 30 AD3 LEU B 256 LYS B 275 1 20 HELIX 31 AD4 HIS B 283 THR B 291 1 9 HELIX 32 AD5 SER B 293 GLY B 310 1 18 HELIX 33 AD6 ASN B 311 HIS B 322 1 12 HELIX 34 AD7 HIS B 322 GLN B 329 1 8 HELIX 35 AD8 LEU B 331 TRP B 353 1 23 HELIX 36 AD9 LYS B 364 LEU B 366 5 3 HELIX 37 AE1 GLU B 380 SER B 397 1 18 HELIX 38 AE2 ALA C 44 THR C 48 5 5 HELIX 39 AE3 ASP C 71 ASN C 88 1 18 SHEET 1 AA1 3 VAL A 397 ASN A 398 0 SHEET 2 AA1 3 SER A 440 LEU A 445 -1 O LEU A 445 N VAL A 397 SHEET 3 AA1 3 ILE A 427 ILE A 432 -1 N ILE A 432 O SER A 440 SHEET 1 AA2 2 TYR B 278 PRO B 279 0 SHEET 2 AA2 2 TRP C 60 GLU C 61 -1 O GLU C 61 N TYR B 278 SHEET 1 AA3 3 ILE B 360 PRO B 362 0 SHEET 2 AA3 3 CYS B 410 PHE B 413 -1 O ILE B 411 N MET B 361 SHEET 3 AA3 3 ALA B 402 SER B 405 -1 N TYR B 403 O VAL B 412 CRYST1 115.575 115.575 126.825 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008652 0.004995 0.000000 0.00000 SCALE2 0.000000 0.009991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007885 0.00000