HEADER NUCLEAR PROTEIN 30-MAY-21 7EYF TITLE CRYO-EM (SPA) STRUCTURE OF HUMAN NUP155 C-TERMINUS (864-1337) AT 5.3 TITLE 2 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP155; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 155 KDA NUCLEOPORIN,NUCLEOPORIN NUP155; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: HEK293; SOURCE 6 ATCC: CRL-1573; SOURCE 7 TISSUE: KIDNEY; SOURCE 8 CELL: EPITHELIAL; SOURCE 9 GENE: NUP155, KIAA0791; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 14 EXPRESSION_SYSTEM_TISSUE: KIDNEY; SOURCE 15 EXPRESSION_SYSTEM_CELL: EPITHELIAL; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: GFP-TAGGED PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PEGFP-C1 KEYWDS HUMAN NUCLEOPORIN 155, NUCLEAR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.NIRANJAN REVDAT 1 08-JUN-22 7EYF 0 JRNL AUTH S.NIRANJAN JRNL TITL CRYO-EM (SPA) STRUCTURE OF HUMAN NUP155 C-TERMINUS JRNL TITL 2 (864-1337) AT 5.3 ANGSTROMS RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 5.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, RELION, COOT, PHENIX, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.300 REMARK 3 NUMBER OF PARTICLES : 69538 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7EYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022514. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PURIFIED NUP155 PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FOR 3 SECONDS BEFORE REMARK 245 PLUNGING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 115.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1338 REMARK 465 SER A 1339 REMARK 465 GLN A 1340 REMARK 465 VAL A 1341 REMARK 465 LEU A 1342 REMARK 465 ASN A 1343 REMARK 465 CYS A 1344 REMARK 465 GLU A 1345 REMARK 465 ARG A 1346 REMARK 465 ARG A 1347 REMARK 465 ARG A 1348 REMARK 465 PHE A 1349 REMARK 465 THR A 1350 REMARK 465 ASN A 1351 REMARK 465 LEU A 1352 REMARK 465 CYS A 1353 REMARK 465 LEU A 1354 REMARK 465 ASP A 1355 REMARK 465 ALA A 1356 REMARK 465 VAL A 1357 REMARK 465 CYS A 1358 REMARK 465 GLY A 1359 REMARK 465 TYR A 1360 REMARK 465 LEU A 1361 REMARK 465 VAL A 1362 REMARK 465 GLU A 1363 REMARK 465 LEU A 1364 REMARK 465 GLN A 1365 REMARK 465 SER A 1366 REMARK 465 MET A 1367 REMARK 465 SER A 1368 REMARK 465 SER A 1369 REMARK 465 SER A 1370 REMARK 465 VAL A 1371 REMARK 465 ALA A 1372 REMARK 465 VAL A 1373 REMARK 465 GLN A 1374 REMARK 465 ALA A 1375 REMARK 465 ILE A 1376 REMARK 465 THR A 1377 REMARK 465 GLY A 1378 REMARK 465 ASN A 1379 REMARK 465 PHE A 1380 REMARK 465 LYS A 1381 REMARK 465 SER A 1382 REMARK 465 LEU A 1383 REMARK 465 GLN A 1384 REMARK 465 ALA A 1385 REMARK 465 LYS A 1386 REMARK 465 LEU A 1387 REMARK 465 GLU A 1388 REMARK 465 ARG A 1389 REMARK 465 LEU A 1390 REMARK 465 HIS A 1391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 1134 N GLU A 1139 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 865 1.31 85.26 REMARK 500 ASN A 909 -71.94 -4.11 REMARK 500 LEU A 913 107.65 -56.95 REMARK 500 GLU A 957 65.80 -53.71 REMARK 500 ASP A 958 170.76 179.44 REMARK 500 GLN A 963 -57.00 -121.92 REMARK 500 GLU A 967 -4.43 75.38 REMARK 500 SER A1036 -77.44 -105.76 REMARK 500 TYR A1040 -5.60 -142.38 REMARK 500 ASP A1103 -1.58 65.68 REMARK 500 GLN A1112 -27.17 -148.59 REMARK 500 SER A1127 2.52 80.63 REMARK 500 MET A1183 78.03 -158.12 REMARK 500 PHE A1192 -70.38 -101.84 REMARK 500 ALA A1193 53.32 -64.03 REMARK 500 PHE A1196 -2.95 -50.20 REMARK 500 SER A1238 -70.42 -139.57 REMARK 500 ARG A1316 -11.80 77.42 REMARK 500 PRO A1320 -15.63 -48.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-31383 RELATED DB: EMDB REMARK 900 SINGLE PARTICLE CRYO-EM STRUCTURE OF C-TERMINUS NUP155 AT 5.3 REMARK 900 ANGSTROMS RESOLUTION DBREF 7EYF A 864 1391 UNP O75694 NU155_HUMAN 864 1391 SEQRES 1 A 528 PRO LEU LEU TYR SER THR ASP ASP ALA ILE CYS SER LYS SEQRES 2 A 528 ALA ASN GLU LEU LEU GLN ARG SER ARG GLN VAL GLN ASN SEQRES 3 A 528 LYS THR GLU LYS GLU ARG MET LEU ARG GLU SER LEU LYS SEQRES 4 A 528 GLU TYR GLN LYS ILE SER ASN GLN VAL ASP LEU SER ASN SEQRES 5 A 528 VAL CYS ALA GLN TYR ARG GLN VAL ARG PHE TYR GLU GLY SEQRES 6 A 528 VAL VAL GLU LEU SER LEU THR ALA ALA GLU LYS LYS ASP SEQRES 7 A 528 PRO GLN GLY LEU GLY LEU HIS PHE TYR LYS HIS GLY GLU SEQRES 8 A 528 PRO GLU GLU ASP ILE VAL GLY LEU GLN ALA PHE GLN GLU SEQRES 9 A 528 ARG LEU ASN SER TYR LYS CYS ILE THR ASP THR LEU GLN SEQRES 10 A 528 GLU LEU VAL ASN GLN SER LYS ALA ALA PRO GLN SER PRO SEQRES 11 A 528 SER VAL PRO LYS LYS PRO GLY PRO PRO VAL LEU SER SER SEQRES 12 A 528 ASP PRO ASN MET LEU SER ASN GLU GLU ALA GLY HIS HIS SEQRES 13 A 528 PHE GLU GLN MET LEU LYS LEU SER GLN ARG SER LYS ASP SEQRES 14 A 528 GLU LEU PHE SER ILE ALA LEU TYR ASN TRP LEU ILE GLN SEQRES 15 A 528 VAL ASP LEU ALA ASP LYS LEU LEU GLN VAL ALA SER PRO SEQRES 16 A 528 PHE LEU GLU PRO HIS LEU VAL ARG MET ALA LYS VAL ASP SEQRES 17 A 528 GLN ASN ARG VAL ARG TYR MET ASP LEU LEU TRP ARG TYR SEQRES 18 A 528 TYR GLU LYS ASN ARG SER PHE SER ASN ALA ALA ARG VAL SEQRES 19 A 528 LEU SER ARG LEU ALA ASP MET HIS SER THR GLU ILE SER SEQRES 20 A 528 LEU GLN GLN ARG LEU GLU TYR ILE ALA ARG ALA ILE LEU SEQRES 21 A 528 SER ALA LYS SER SER THR ALA ILE SER SER ILE ALA ALA SEQRES 22 A 528 ASP GLY GLU PHE LEU HIS GLU LEU GLU GLU LYS MET GLU SEQRES 23 A 528 VAL ALA ARG ILE GLN LEU GLN ILE GLN GLU THR LEU GLN SEQRES 24 A 528 ARG GLN TYR SER HIS HIS SER SER VAL GLN ASP ALA VAL SEQRES 25 A 528 SER GLN LEU ASP SER GLU LEU MET ASP ILE THR LYS LEU SEQRES 26 A 528 TYR GLY GLU PHE ALA ASP PRO PHE LYS LEU ALA GLU CYS SEQRES 27 A 528 LYS LEU ALA ILE ILE HIS CYS ALA GLY TYR SER ASP PRO SEQRES 28 A 528 ILE LEU VAL GLN THR LEU TRP GLN ASP ILE ILE GLU LYS SEQRES 29 A 528 GLU LEU SER ASP SER VAL THR LEU SER SER SER ASP ARG SEQRES 30 A 528 MET HIS ALA LEU SER LEU LYS ILE VAL LEU LEU GLY LYS SEQRES 31 A 528 ILE TYR ALA GLY THR PRO ARG PHE PHE PRO LEU ASP PHE SEQRES 32 A 528 ILE VAL GLN PHE LEU GLU GLN GLN VAL CYS THR LEU ASN SEQRES 33 A 528 TRP ASP VAL GLY PHE VAL ILE GLN THR MET ASN GLU ILE SEQRES 34 A 528 GLY VAL PRO LEU PRO ARG LEU LEU GLU VAL TYR ASP GLN SEQRES 35 A 528 LEU PHE LYS SER ARG ASP PRO PHE TRP ASN ARG MET LYS SEQRES 36 A 528 LYS PRO LEU HIS LEU LEU ASP CYS ILE HIS VAL LEU LEU SEQRES 37 A 528 ILE ARG TYR VAL GLU ASN PRO SER GLN VAL LEU ASN CYS SEQRES 38 A 528 GLU ARG ARG ARG PHE THR ASN LEU CYS LEU ASP ALA VAL SEQRES 39 A 528 CYS GLY TYR LEU VAL GLU LEU GLN SER MET SER SER SER SEQRES 40 A 528 VAL ALA VAL GLN ALA ILE THR GLY ASN PHE LYS SER LEU SEQRES 41 A 528 GLN ALA LYS LEU GLU ARG LEU HIS HELIX 1 AA1 ILE A 873 ARG A 885 1 13 HELIX 2 AA2 LYS A 890 LYS A 906 1 17 HELIX 3 AA3 LEU A 913 ARG A 921 1 9 HELIX 4 AA4 TYR A 926 GLU A 938 1 13 HELIX 5 AA5 HIS A 948 LYS A 951 1 4 HELIX 6 AA6 ILE A 959 ASN A 984 1 26 HELIX 7 AA7 GLU A 1014 GLN A 1028 1 15 HELIX 8 AA8 GLU A 1033 GLN A 1045 1 13 HELIX 9 AA9 LEU A 1060 MET A 1067 1 8 HELIX 10 AB1 ARG A 1074 LYS A 1087 1 14 HELIX 11 AB2 SER A 1092 LEU A 1101 1 10 HELIX 12 AB3 LEU A 1111 SER A 1124 1 14 HELIX 13 AB4 ALA A 1135 GLN A 1164 1 30 HELIX 14 AB5 VAL A 1171 SER A 1180 1 10 HELIX 15 AB6 ILE A 1185 PHE A 1192 1 8 HELIX 16 AB7 ALA A 1199 CYS A 1208 1 10 HELIX 17 AB8 PRO A 1214 VAL A 1233 1 20 HELIX 18 AB9 ASP A 1239 LYS A 1253 1 15 HELIX 19 AC1 LEU A 1264 THR A 1277 1 14 HELIX 20 AC2 GLY A 1283 ILE A 1292 1 10 HELIX 21 AC3 LEU A 1296 LEU A 1306 1 11 HELIX 22 AC4 PRO A 1320 VAL A 1335 1 16 HELIX 23 AC5 ASP A 1050 GLN A 1054 1 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000