HEADER HYDROLASE 31-MAY-21 7EYO TITLE CRYSTAL STRUCTURE OF LEECH HYALURONIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYALURONOGLUCURONIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LHYAL,HYALURONATE 3-GLYCANOHYDROLASE; COMPND 5 EC: 3.2.1.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRUDO NIPPONIA; SOURCE 3 ORGANISM_COMMON: KOREAN BLOOD-SUCKING LEECH; SOURCE 4 ORGANISM_TAXID: 42736; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS HYALURONIDAE, GH79, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.HUANG,X.D.HOU,Y.J.RAO,Z.KANG REVDAT 2 29-NOV-23 7EYO 1 REMARK REVDAT 1 25-MAY-22 7EYO 0 JRNL AUTH H.HUANG,X.HOU,R.XU,Z.DENG,Y.WANG,G.DU,Y.RAO,J.CHEN,Z.KANG JRNL TITL STRUCTURE AND CLEAVAGE PATTERN OF A HYALURONATE JRNL TITL 2 3-GLYCANOHYDROLASE IN THE GLYCOSIDE HYDROLASE 79 FAMILY. JRNL REF CARBOHYDR POLYM V. 277 18838 2022 JRNL REFN ESSN 1879-1344 JRNL PMID 34893255 JRNL DOI 10.1016/J.CARBPOL.2021.118838 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 40596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2024 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2218 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.049 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4013 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3638 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5443 ; 1.669 ; 1.662 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8478 ; 1.423 ; 1.603 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 8.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;35.924 ;24.202 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;13.846 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.054 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 517 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4430 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 832 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7EYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43983 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5LA4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRISODIUM CITRATE, ED-2001, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.73700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 489 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 415 CG CD CE NZ REMARK 470 ILE A 416 CG1 CG2 CD1 REMARK 470 ASP A 417 CG OD1 OD2 REMARK 470 SER A 420 OG REMARK 470 LYS A 464 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 20 54.83 -97.35 REMARK 500 TRP A 68 30.00 -144.56 REMARK 500 LYS A 103 -130.70 68.80 REMARK 500 LYS A 142 -47.35 -134.19 REMARK 500 ASN A 175 125.71 -171.06 REMARK 500 GLU A 176 53.57 38.96 REMARK 500 ASP A 216 62.67 64.02 REMARK 500 ALA A 232 20.95 -151.98 REMARK 500 GLU A 290 111.34 -165.05 REMARK 500 VAL A 302 -47.59 -130.75 REMARK 500 ASN A 334 145.20 89.87 REMARK 500 ASP A 372 84.07 -161.95 REMARK 500 ARG A 394 -49.86 -132.52 REMARK 500 ILE A 416 69.44 -105.85 REMARK 500 LEU A 450 -173.98 -66.45 REMARK 500 VAL A 451 112.08 -173.98 REMARK 500 SER A 452 42.93 38.76 REMARK 500 LYS A 464 -121.02 -67.07 REMARK 500 THR A 465 -59.60 90.55 REMARK 500 ASN A 483 63.74 34.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 993 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 994 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 995 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 996 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A 997 DISTANCE = 8.44 ANGSTROMS DBREF 7EYO A 1 489 UNP X4Y2L4 LHYAL_HIRNI 1 489 SEQADV 7EYO MET A -6 UNP X4Y2L4 INITIATING METHIONINE SEQADV 7EYO HIS A -5 UNP X4Y2L4 EXPRESSION TAG SEQADV 7EYO HIS A -4 UNP X4Y2L4 EXPRESSION TAG SEQADV 7EYO HIS A -3 UNP X4Y2L4 EXPRESSION TAG SEQADV 7EYO HIS A -2 UNP X4Y2L4 EXPRESSION TAG SEQADV 7EYO HIS A -1 UNP X4Y2L4 EXPRESSION TAG SEQADV 7EYO HIS A 0 UNP X4Y2L4 EXPRESSION TAG SEQRES 1 A 496 MET HIS HIS HIS HIS HIS HIS MET LYS GLU ILE ALA VAL SEQRES 2 A 496 THR ILE ASP ASP LYS ASN VAL ILE ALA SER VAL SER GLU SEQRES 3 A 496 SER PHE HIS GLY VAL ALA PHE ASP ALA SER LEU PHE SER SEQRES 4 A 496 PRO LYS GLY LEU TRP SER PHE VAL ASP ILE THR SER PRO SEQRES 5 A 496 LYS LEU PHE LYS LEU LEU GLU GLY LEU SER PRO GLY TYR SEQRES 6 A 496 PHE ARG VAL GLY GLY THR PHE ALA ASN TRP LEU PHE PHE SEQRES 7 A 496 ASP LEU ASP GLU ASN ASN LYS TRP LYS ASP TYR TRP ALA SEQRES 8 A 496 PHE LYS ASP LYS THR PRO GLU THR ALA THR ILE THR ARG SEQRES 9 A 496 ARG TRP LEU PHE ARG LYS GLN ASN ASN LEU LYS LYS GLU SEQRES 10 A 496 THR PHE ASP ASP LEU VAL LYS LEU THR LYS GLY SER LYS SEQRES 11 A 496 MET ARG LEU LEU PHE ASP LEU ASN ALA GLU VAL ARG THR SEQRES 12 A 496 GLY TYR GLU ILE GLY LYS LYS MET THR SER THR TRP ASP SEQRES 13 A 496 SER SER GLU ALA GLU LYS LEU PHE LYS TYR CYS VAL SER SEQRES 14 A 496 LYS GLY TYR GLY ASP ASN ILE ASP TRP GLU LEU GLY ASN SEQRES 15 A 496 GLU PRO ASP HIS THR SER ALA HIS ASN LEU THR GLU LYS SEQRES 16 A 496 GLN VAL GLY GLU ASP PHE LYS ALA LEU HIS LYS VAL LEU SEQRES 17 A 496 GLU LYS TYR PRO THR LEU ASN LYS GLY SER LEU VAL GLY SEQRES 18 A 496 PRO ASP VAL GLY TRP MET GLY VAL SER TYR VAL LYS GLY SEQRES 19 A 496 LEU ALA ASP GLY ALA GLY ASP HIS VAL THR ALA PHE THR SEQRES 20 A 496 LEU HIS GLN TYR TYR PHE ASP GLY ASN THR SER ASP VAL SEQRES 21 A 496 SER THR TYR LEU ASP ALA THR TYR PHE LYS LYS LEU GLN SEQRES 22 A 496 GLN LEU PHE ASP LYS VAL LYS ASP VAL LEU LYS ASN SER SEQRES 23 A 496 PRO HIS LYS ASP LYS PRO LEU TRP LEU GLY GLU THR SER SEQRES 24 A 496 SER GLY TYR ASN SER GLY THR LYS ASP VAL SER ASP ARG SEQRES 25 A 496 TYR VAL SER GLY PHE LEU THR LEU ASP LYS LEU GLY LEU SEQRES 26 A 496 SER ALA ALA ASN ASN VAL LYS VAL VAL ILE ARG GLN THR SEQRES 27 A 496 ILE TYR ASN GLY TYR TYR GLY LEU LEU ASP LYS ASN THR SEQRES 28 A 496 LEU GLU PRO ASN PRO ASP TYR TRP LEU MET HIS VAL HIS SEQRES 29 A 496 ASN SER LEU VAL GLY ASN THR VAL PHE LYS VAL ASP VAL SEQRES 30 A 496 SER ASP PRO THR ASN LYS ALA ARG VAL TYR ALA GLN CYS SEQRES 31 A 496 THR LYS THR ASN SER LYS HIS THR GLN SER ARG TYR TYR SEQRES 32 A 496 LYS GLY SER LEU THR ILE PHE ALA LEU ASN VAL GLY ASP SEQRES 33 A 496 GLU ASP VAL THR LEU LYS ILE ASP GLN TYR SER GLY LYS SEQRES 34 A 496 LYS ILE TYR SER TYR ILE LEU THR PRO GLU GLY GLY GLN SEQRES 35 A 496 LEU THR SER GLN LYS VAL LEU LEU ASN GLY LYS GLU LEU SEQRES 36 A 496 LYS LEU VAL SER ASP GLN LEU PRO GLU LEU ASN ALA ASP SEQRES 37 A 496 GLU SER LYS THR SER PHE THR LEU SER PRO LYS THR PHE SEQRES 38 A 496 GLY PHE PHE VAL VAL SER ASP ALA ASN VAL GLU ALA CYS SEQRES 39 A 496 LYS LYS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET GOL A 501 6 HET GOL A 502 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *397(H2 O) HELIX 1 AA1 SER A 44 GLY A 53 1 10 HELIX 2 AA2 GLY A 63 ASN A 67 5 5 HELIX 3 AA3 TYR A 82 LYS A 86 5 5 HELIX 4 AA4 LYS A 108 GLY A 121 1 14 HELIX 5 AA5 SER A 150 LYS A 163 1 14 HELIX 6 AA6 THR A 186 GLU A 202 1 17 HELIX 7 AA7 LYS A 203 ASN A 208 5 6 HELIX 8 AA8 GLY A 218 GLY A 221 5 4 HELIX 9 AA9 VAL A 222 GLY A 233 1 12 HELIX 10 AB1 ASP A 234 VAL A 236 5 3 HELIX 11 AB2 ASN A 249 SER A 251 5 3 HELIX 12 AB3 SER A 254 TYR A 261 5 8 HELIX 13 AB4 PHE A 262 LEU A 276 1 15 HELIX 14 AB5 ARG A 305 VAL A 307 5 3 HELIX 15 AB6 SER A 308 ASN A 322 1 15 HELIX 16 AB7 ASN A 348 LEU A 360 1 13 HELIX 17 AB8 ILE A 416 SER A 420 5 5 HELIX 18 AB9 GLY A 433 GLN A 435 5 3 HELIX 19 AC1 VAL A 484 LYS A 488 5 5 SHEET 1 AA1 8 ALA A 15 SER A 16 0 SHEET 2 AA1 8 VAL A 361 VAL A 370 -1 O VAL A 365 N ALA A 15 SHEET 3 AA1 8 ALA A 377 THR A 384 -1 O CYS A 383 N GLY A 362 SHEET 4 AA1 8 LEU A 400 ASN A 406 -1 O THR A 401 N GLN A 382 SHEET 5 AA1 8 THR A 473 VAL A 479 -1 O PHE A 477 N ILE A 402 SHEET 6 AA1 8 ILE A 424 PRO A 431 -1 N TYR A 425 O VAL A 478 SHEET 7 AA1 8 VAL A 441 LEU A 443 -1 O LEU A 442 N THR A 430 SHEET 8 AA1 8 LYS A 446 GLU A 447 -1 O LYS A 446 N LEU A 443 SHEET 1 AA2 5 ALA A 15 SER A 16 0 SHEET 2 AA2 5 VAL A 361 VAL A 370 -1 O VAL A 365 N ALA A 15 SHEET 3 AA2 5 ILE A 4 ASP A 9 -1 N THR A 7 O ASP A 369 SHEET 4 AA2 5 VAL A 412 LYS A 415 1 O LYS A 415 N ILE A 4 SHEET 5 AA2 5 PHE A 467 LEU A 469 -1 O PHE A 467 N LEU A 414 SHEET 1 AA3 9 HIS A 22 ASP A 27 0 SHEET 2 AA3 9 GLY A 57 GLY A 62 1 O ARG A 60 N PHE A 26 SHEET 3 AA3 9 MET A 124 LEU A 130 1 O ASP A 129 N VAL A 61 SHEET 4 AA3 9 ILE A 169 LEU A 173 1 O ASP A 170 N LEU A 126 SHEET 5 AA3 9 LEU A 212 VAL A 217 1 O VAL A 213 N TRP A 171 SHEET 6 AA3 9 ALA A 238 GLN A 243 1 O HIS A 242 N VAL A 217 SHEET 7 AA3 9 LEU A 286 THR A 291 1 O TRP A 287 N LEU A 241 SHEET 8 AA3 9 VAL A 324 ARG A 329 1 O ILE A 328 N LEU A 288 SHEET 9 AA3 9 HIS A 22 ASP A 27 1 N GLY A 23 O ARG A 329 SHEET 1 AA4 2 PHE A 31 SER A 32 0 SHEET 2 AA4 2 GLY A 35 LEU A 36 -1 N GLY A 35 O SER A 32 SHEET 1 AA5 2 LEU A 69 PHE A 71 0 SHEET 2 AA5 2 ASN A 105 LEU A 107 1 O ASN A 105 N PHE A 70 SHEET 1 AA6 2 ARG A 135 THR A 136 0 SHEET 2 AA6 2 THR A 147 TRP A 148 -1 O THR A 147 N THR A 136 SHEET 1 AA7 2 PHE A 246 ASP A 247 0 SHEET 2 AA7 2 GLY A 294 TYR A 295 1 O TYR A 295 N PHE A 246 SSBOND 1 CYS A 383 CYS A 487 1555 1555 2.17 LINK ND2 ASN A 184 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A 249 C1 NAG C 1 1555 1555 1.29 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 CISPEP 1 SER A 55 PRO A 56 0 -10.66 CISPEP 2 GLY A 214 PRO A 215 0 -0.39 CISPEP 3 GLN A 330 THR A 331 0 8.46 CRYST1 43.514 69.474 86.739 90.00 95.97 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022981 0.000000 0.002404 0.00000 SCALE2 0.000000 0.014394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011592 0.00000