HEADER TRANSFERASE 06-JUN-21 7F0S TITLE A CRYSTAL STRUCTURE OF ALPHAVIRUS NONSTRUCTURAL PROTEIN 4 (NSP4) TITLE 2 REVEALS AN INTRINSICALLY 1DYNAMIC RNA-DEPENDENT RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE NSP4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NON-STRUCTURAL PROTEIN 4,NSP4; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSS RIVER VIRUS (STRAIN T48); SOURCE 3 ORGANISM_COMMON: RRV; SOURCE 4 ORGANISM_TAXID: 11032; SOURCE 5 STRAIN: T48; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA II T1R; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSUMO-LIC KEYWDS RNA DEPENDENT RNA POLYMERASE, RNA DIRECTED RNA POLYMERASE, RDRP, KEYWDS 2 ALPHAVIRUS, NSP4, NONSTRUCTURAL PROTEIN 4, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.TAN,D.LUO REVDAT 2 29-MAY-24 7F0S 1 REMARK REVDAT 1 16-FEB-22 7F0S 0 JRNL AUTH Y.B.TAN,L.S.LELLO,X.LIU,Y.S.LAW,C.KANG,J.LESCAR,J.ZHENG, JRNL AUTH 2 A.MERITS,D.LUO JRNL TITL CRYSTAL STRUCTURES OF ALPHAVIRUS NONSTRUCTURAL PROTEIN 4 JRNL TITL 2 (NSP4) REVEAL AN INTRINSICALLY DYNAMIC RNA-DEPENDENT RNA JRNL TITL 3 POLYMERASE FOLD. JRNL REF NUCLEIC ACIDS RES. V. 50 1000 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35037043 JRNL DOI 10.1093/NAR/GKAB1302 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1300 - 5.4000 0.98 2714 146 0.2416 0.2518 REMARK 3 2 5.4000 - 4.2900 1.00 2768 147 0.2379 0.2505 REMARK 3 3 4.2900 - 3.7500 1.00 2784 142 0.2493 0.3018 REMARK 3 4 3.7500 - 3.4100 1.00 2754 151 0.2816 0.3016 REMARK 3 5 3.4100 - 3.1600 1.00 2801 142 0.3082 0.3525 REMARK 3 6 3.1600 - 2.9800 1.00 2733 156 0.3377 0.3356 REMARK 3 7 2.9800 - 2.8300 1.00 2777 143 0.3357 0.3571 REMARK 3 8 2.8300 - 2.7000 1.00 2790 136 0.3473 0.4106 REMARK 3 9 2.7000 - 2.6000 1.00 2787 142 0.3842 0.4640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.525 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3159 REMARK 3 ANGLE : 0.976 4297 REMARK 3 CHIRALITY : 0.050 522 REMARK 3 PLANARITY : 0.006 554 REMARK 3 DIHEDRAL : 13.715 435 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6967 -14.7125 60.4819 REMARK 3 T TENSOR REMARK 3 T11: 1.3431 T22: 1.3296 REMARK 3 T33: 1.9062 T12: -0.2608 REMARK 3 T13: 0.2378 T23: 0.1575 REMARK 3 L TENSOR REMARK 3 L11: 0.7820 L22: 0.1358 REMARK 3 L33: 0.4906 L12: -0.3149 REMARK 3 L13: -0.5284 L23: 0.3295 REMARK 3 S TENSOR REMARK 3 S11: -1.6519 S12: -1.5385 S13: -0.4883 REMARK 3 S21: -0.7044 S22: 0.7183 S23: 1.1481 REMARK 3 S31: 2.0954 S32: 0.9166 S33: -0.0087 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 134 ) AND (RESID REMARK 3 185 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.298 -11.194 44.047 REMARK 3 T TENSOR REMARK 3 T11: 0.6694 T22: 0.5964 REMARK 3 T33: 0.5833 T12: -0.0421 REMARK 3 T13: 0.0535 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.2175 L22: 0.5552 REMARK 3 L33: 1.7109 L12: 1.0447 REMARK 3 L13: 0.0079 L23: -0.1983 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: 0.1267 S13: -0.2272 REMARK 3 S21: -0.1922 S22: 0.0947 S23: -0.1843 REMARK 3 S31: 0.0585 S32: 0.0976 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8185 4.8201 34.2302 REMARK 3 T TENSOR REMARK 3 T11: 0.6677 T22: 0.6810 REMARK 3 T33: 0.7435 T12: -0.1452 REMARK 3 T13: -0.0956 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.8680 L22: 2.6142 REMARK 3 L33: 3.0543 L12: -0.8658 REMARK 3 L13: -1.1287 L23: 0.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.0401 S12: 0.3171 S13: -0.7029 REMARK 3 S21: -0.2559 S22: -0.0108 S23: 0.3446 REMARK 3 S31: 0.3443 S32: -0.4084 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 491 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.1999 -1.8589 55.5317 REMARK 3 T TENSOR REMARK 3 T11: 0.8652 T22: 0.7144 REMARK 3 T33: 0.9530 T12: 0.0547 REMARK 3 T13: 0.2518 T23: 0.0780 REMARK 3 L TENSOR REMARK 3 L11: -0.6392 L22: 4.0941 REMARK 3 L33: -0.1488 L12: 1.1173 REMARK 3 L13: 1.1481 L23: -1.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.1388 S12: -0.0133 S13: -0.2409 REMARK 3 S21: 0.4164 S22: 0.1995 S23: -0.3763 REMARK 3 S31: -0.0918 S32: -0.3250 S33: 0.7939 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.9126 -0.2408 48.0754 REMARK 3 T TENSOR REMARK 3 T11: 1.1527 T22: 1.5502 REMARK 3 T33: 1.0699 T12: -0.3869 REMARK 3 T13: -0.2340 T23: 0.4264 REMARK 3 L TENSOR REMARK 3 L11: 0.0028 L22: 0.0382 REMARK 3 L33: 0.0406 L12: -0.0113 REMARK 3 L13: 0.0605 L23: -0.0414 REMARK 3 S TENSOR REMARK 3 S11: -0.2640 S12: -0.7266 S13: -0.1038 REMARK 3 S21: -0.0642 S22: 0.3491 S23: 0.2877 REMARK 3 S31: -0.1052 S32: -0.1162 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.9335 4.2217 46.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.9829 T22: 0.8546 REMARK 3 T33: 2.2276 T12: 0.0786 REMARK 3 T13: -0.1995 T23: 0.2892 REMARK 3 L TENSOR REMARK 3 L11: 0.7422 L22: 0.0991 REMARK 3 L33: 0.4049 L12: 0.0035 REMARK 3 L13: 0.4222 L23: 0.0891 REMARK 3 S TENSOR REMARK 3 S11: 0.3339 S12: 0.1987 S13: -0.0122 REMARK 3 S21: -0.3583 S22: 0.7010 S23: 0.2331 REMARK 3 S31: 0.2329 S32: 0.7244 S33: 0.0480 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.946 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37774 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.690 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.69 REMARK 200 R MERGE FOR SHELL (I) : 4.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGON REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES/TRIS, 24% PEG 3350, 0.2M REMARK 280 AMMONIUM ACETATE, 0.3% TMAO, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.41850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.82300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.17450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.82300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.41850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.17450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 110 REMARK 465 UNK A 135 REMARK 465 UNK A 136 REMARK 465 UNK A 137 REMARK 465 UNK A 138 REMARK 465 UNK A 139 REMARK 465 UNK A 140 REMARK 465 UNK A 146 REMARK 465 UNK A 147 REMARK 465 UNK A 148 REMARK 465 UNK A 149 REMARK 465 UNK A 150 REMARK 465 UNK A 151 REMARK 465 UNK A 152 REMARK 465 UNK A 153 REMARK 465 UNK A 154 REMARK 465 UNK A 155 REMARK 465 UNK A 156 REMARK 465 UNK A 157 REMARK 465 UNK A 158 REMARK 465 UNK A 159 REMARK 465 UNK A 160 REMARK 465 UNK A 161 REMARK 465 UNK A 162 REMARK 465 UNK A 163 REMARK 465 UNK A 164 REMARK 465 UNK A 165 REMARK 465 UNK A 166 REMARK 465 UNK A 167 REMARK 465 UNK A 168 REMARK 465 UNK A 169 REMARK 465 UNK A 170 REMARK 465 UNK A 175 REMARK 465 UNK A 176 REMARK 465 UNK A 177 REMARK 465 UNK A 178 REMARK 465 UNK A 179 REMARK 465 UNK A 180 REMARK 465 UNK A 181 REMARK 465 UNK A 182 REMARK 465 UNK A 183 REMARK 465 UNK A 184 REMARK 465 THR A 210 REMARK 465 GLN A 211 REMARK 465 MET A 212 REMARK 465 ARG A 213 REMARK 465 ARG A 292 REMARK 465 ASP A 293 REMARK 465 VAL A 294 REMARK 465 LYS A 295 REMARK 465 VAL A 296 REMARK 465 THR A 297 REMARK 465 PRO A 298 REMARK 465 GLY A 299 REMARK 465 THR A 300 REMARK 465 LYS A 301 REMARK 465 HIS A 302 REMARK 465 THR A 303 REMARK 465 GLU A 304 REMARK 465 GLU A 305 REMARK 465 ARG A 306 REMARK 465 PRO A 307 REMARK 465 GLU A 575 REMARK 465 VAL A 576 REMARK 465 ASN A 577 REMARK 465 GLY A 578 REMARK 465 THR A 588 REMARK 465 LEU A 589 REMARK 465 ALA A 590 REMARK 465 LYS A 591 REMARK 465 SER A 592 REMARK 465 LEU A 593 REMARK 465 GLY A 601 REMARK 465 PRO A 602 REMARK 465 ILE A 603 REMARK 465 VAL A 604 REMARK 465 HIS A 605 REMARK 465 LEU A 606 REMARK 465 TYR A 607 REMARK 465 GLY A 608 REMARK 465 GLY A 609 REMARK 465 PRO A 610 REMARK 465 LYS A 611 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ASN A 132 CG OD1 ND2 REMARK 470 TYR A 133 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 206 CG OD1 ND2 REMARK 470 ARG A 259 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 264 CG CD CE NZ REMARK 470 ARG A 285 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 VAL A 309 CG1 CG2 REMARK 470 GLN A 310 CG CD OE1 NE2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 ASP A 376 CG OD1 OD2 REMARK 470 LYS A 377 CG CD CE NZ REMARK 470 GLU A 410 CG CD OE1 OE2 REMARK 470 ARG A 421 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 GLN A 542 CG CD OE1 NE2 REMARK 470 ASP A 545 CG OD1 OD2 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 GLU A 565 CG CD OE1 OE2 REMARK 470 ARG A 573 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 574 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 597 CG CD CE NZ REMARK 470 LYS A 598 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 268 OG1 THR A 272 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 113 NH2 ARG A 449 2655 2.17 REMARK 500 OG SER A 114 O HIS A 415 4446 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 514 CD - CE - NZ ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 UNK A 142 75.33 -152.18 REMARK 500 UNK A 172 -56.44 70.55 REMARK 500 PRO A 190 177.85 -58.94 REMARK 500 ASN A 206 -35.21 -134.10 REMARK 500 LEU A 215 -71.45 -60.06 REMARK 500 PRO A 216 -14.41 -48.99 REMARK 500 LYS A 261 -23.55 -141.54 REMARK 500 LEU A 278 -2.64 65.60 REMARK 500 PHE A 286 -4.80 -143.69 REMARK 500 SER A 374 25.92 -142.34 REMARK 500 ASP A 381 -37.38 64.73 REMARK 500 ARG A 452 -123.02 58.46 REMARK 500 CYS A 460 119.91 -164.42 REMARK 500 PRO A 477 -3.18 -56.29 REMARK 500 GLU A 500 -62.10 -121.16 REMARK 500 PHE A 505 114.46 -164.11 REMARK 500 PHE A 596 6.44 -68.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 514 VAL A 515 149.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE UNK RESIDUES SHOULD BE IN BETWEEN THE MISSING RESIDUES OF REMARK 999 POSITIONS 135-184 BUT THE AUTHOR IS UNSURE THE EXACT PART/POSITION REMARK 999 CORRESPONDS WITH THESE RESIDUES. SO THE RESIDUE NUMBERS OF 141-145, REMARK 999 171-174 IS MEANINGLESS. THE CORRECT SEQUENCE OF 135-184 IS AS REMARK 999 FOLLOWS. TVASYQITDEYDAYLDMVDGSESCLDRATFCPAKLRCYPKHHAYHQPQVR DBREF 7F0S A 110 134 UNP P13888 POLN_RRVT 648 672 DBREF 7F0S A 135 184 PDB 7F0S 7F0S 135 184 DBREF 7F0S A 185 611 UNP P13888 POLN_RRVT 723 1149 SEQADV 7F0S ALA A 192 UNP P13888 GLN 730 ENGINEERED MUTATION SEQADV 7F0S ALA A 196 UNP P13888 GLN 734 ENGINEERED MUTATION SEQRES 1 A 502 SER VAL GLU ASP SER LEU GLN ASN PRO GLU VAL ALA VAL SEQRES 2 A 502 ALA ALA CYS ASN ALA PHE LEU GLU ALA ASN TYR PRO UNK SEQRES 3 A 502 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 4 A 502 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 5 A 502 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 6 A 502 UNK UNK UNK UNK UNK UNK UNK UNK UNK UNK SER ALA VAL SEQRES 7 A 502 PRO SER PRO PHE ALA ASN THR LEU ALA ASN VAL LEU ALA SEQRES 8 A 502 ALA ALA THR LYS ARG ASN CYS ASN VAL THR GLN MET ARG SEQRES 9 A 502 GLU LEU PRO THR LEU ASP SER ALA VAL LEU ASN VAL GLU SEQRES 10 A 502 CYS PHE LYS LYS PHE ALA CYS ASN GLY GLU TYR TRP GLN SEQRES 11 A 502 GLU PHE LYS ASP ASN PRO ILE ARG ILE THR THR GLU ASN SEQRES 12 A 502 ILE THR THR TYR VAL THR ARG LEU LYS GLY PRO LYS ALA SEQRES 13 A 502 ALA ALA LEU PHE ALA LYS THR HIS ASN LEU VAL PRO LEU SEQRES 14 A 502 GLN GLU VAL PRO MET ASP ARG PHE VAL VAL ASP MET LYS SEQRES 15 A 502 ARG ASP VAL LYS VAL THR PRO GLY THR LYS HIS THR GLU SEQRES 16 A 502 GLU ARG PRO LYS VAL GLN VAL ILE GLN ALA ALA GLU PRO SEQRES 17 A 502 LEU ALA THR ALA TYR LEU CYS GLY ILE HIS ARG GLU LEU SEQRES 18 A 502 VAL ARG ARG LEU LYS ALA VAL LEU ALA PRO ASN ILE HIS SEQRES 19 A 502 THR LEU PHE ASP MET SER ALA GLU ASP PHE ASP ALA ILE SEQRES 20 A 502 ILE ALA ALA HIS PHE GLN PRO GLY ASP ALA VAL LEU GLU SEQRES 21 A 502 THR ASP ILE ALA SER PHE ASP LYS SER GLN ASP ASP SER SEQRES 22 A 502 LEU ALA LEU THR ALA LEU MET LEU LEU GLU ASP LEU GLY SEQRES 23 A 502 VAL ASP GLN GLU LEU LEU ASP LEU ILE GLU ALA ALA PHE SEQRES 24 A 502 GLY GLU ILE THR SER VAL HIS LEU PRO THR GLY THR ARG SEQRES 25 A 502 PHE LYS PHE GLY ALA MET MET LYS SER GLY MET PHE LEU SEQRES 26 A 502 THR LEU PHE VAL ASN THR LEU LEU ASN ILE VAL ILE ALA SEQRES 27 A 502 CYS ARG VAL LEU ARG GLU LYS LEU THR ASN SER VAL CYS SEQRES 28 A 502 ALA ALA PHE ILE GLY ASP ASP ASN ILE VAL HIS GLY VAL SEQRES 29 A 502 ARG SER ASP PRO LEU MET ALA GLU ARG CYS ALA SER TRP SEQRES 30 A 502 VAL ASN MET GLU VAL LYS ILE ILE ASP ALA THR MET CYS SEQRES 31 A 502 GLU LYS PRO PRO TYR PHE CYS GLY GLY PHE ILE LEU TYR SEQRES 32 A 502 ASP LYS VAL THR GLY SER ALA CYS ARG VAL ALA ASP PRO SEQRES 33 A 502 LEU LYS ARG LEU PHE LYS LEU GLY LYS PRO LEU PRO ALA SEQRES 34 A 502 GLY ASP THR GLN ASP GLU ASP ARG ARG ARG ALA LEU LYS SEQRES 35 A 502 ASP GLU THR ASP ARG TRP ALA ARG VAL GLY LEU LYS SER SEQRES 36 A 502 GLU LEU GLU ILE ALA LEU SER SER ARG TYR GLU VAL ASN SEQRES 37 A 502 GLY THR GLY ASN ILE VAL ARG ALA MET ALA THR LEU ALA SEQRES 38 A 502 LYS SER LEU LYS ASN PHE LYS LYS LEU ARG GLY PRO ILE SEQRES 39 A 502 VAL HIS LEU TYR GLY GLY PRO LYS FORMUL 2 HOH *(H2 O) HELIX 1 AA1 ASP A 113 GLN A 116 5 4 HELIX 2 AA2 ASN A 117 ASN A 132 1 16 HELIX 3 AA3 ALA A 192 ARG A 205 1 14 HELIX 4 AA4 LEU A 215 ALA A 232 1 18 HELIX 5 AA5 TYR A 237 ASN A 244 1 8 HELIX 6 AA6 THR A 249 THR A 258 1 10 HELIX 7 AA7 GLY A 262 HIS A 273 1 12 HELIX 8 AA8 PRO A 282 ARG A 285 5 4 HELIX 9 AA9 ALA A 315 LEU A 338 1 24 HELIX 10 AB1 SER A 349 PHE A 361 1 13 HELIX 11 AB2 ASP A 381 GLY A 395 1 15 HELIX 12 AB3 ASP A 397 GLY A 409 1 13 HELIX 13 AB4 GLY A 425 ARG A 452 1 28 HELIX 14 AB5 ARG A 452 ASN A 457 1 6 HELIX 15 AB6 MET A 479 ALA A 484 1 6 HELIX 16 AB7 ASP A 524 LEU A 532 1 9 HELIX 17 AB8 ARG A 548 ALA A 558 1 11 HELIX 18 AB9 LEU A 562 TYR A 574 1 13 HELIX 19 AC1 ASN A 581 MET A 586 1 6 HELIX 20 AC2 LYS A 594 LYS A 598 5 5 SHEET 1 AA1 2 VAL A 287 ASP A 289 0 SHEET 2 AA1 2 VAL A 309 VAL A 311 -1 O GLN A 310 N VAL A 288 SHEET 1 AA2 5 ILE A 342 THR A 344 0 SHEET 2 AA2 5 ALA A 461 ILE A 464 1 O ALA A 461 N HIS A 343 SHEET 3 AA2 5 ASP A 467 HIS A 471 -1 O ASP A 467 N ILE A 464 SHEET 4 AA2 5 ALA A 366 ILE A 372 -1 N LEU A 368 O VAL A 470 SHEET 5 AA2 5 VAL A 491 THR A 497 -1 O ILE A 494 N GLU A 369 SHEET 1 AA3 2 GLY A 508 ASP A 513 0 SHEET 2 AA3 2 SER A 518 ALA A 523 -1 O VAL A 522 N PHE A 509 CRYST1 64.837 68.349 99.646 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010036 0.00000