HEADER OXIDOREDUCTASE 10-JUN-21 7F1Y TITLE L-LACTATE OXIDASE WITHOUT SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROCOCCUS VIRIDANS; SOURCE 3 ORGANISM_TAXID: 1377; SOURCE 4 EXPRESSION_SYSTEM: AEROCOCCUS VIRIDANS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1377 KEYWDS L-LACTATE, COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MORIMOTO,K.INAKA REVDAT 2 29-NOV-23 7F1Y 1 REMARK REVDAT 1 15-JUN-22 7F1Y 0 JRNL AUTH N.FURUBAYASHI,K.INAKA,M.KAMO,Y.UMENA,T.MATSUOKA,Y.MORIMOTO JRNL TITL DYNAMIC INTERACTIONS IN THE L-LACTATE OXIDASE ACTIVE SITE JRNL TITL 2 FACILITATE SUBSTRATE BINDING AT PH4.5. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 568 131 2021 JRNL REFN ESSN 1090-2104 JRNL PMID 34214876 JRNL DOI 10.1016/J.BBRC.2021.06.078 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 167253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 8622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11328 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 638 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 728 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 1.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5755 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5237 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7803 ; 1.922 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12135 ; 1.536 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 715 ; 6.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 301 ;32.338 ;22.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 914 ;14.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.797 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6556 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1216 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2877 ; 2.450 ; 2.507 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2875 ; 2.450 ; 2.507 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3585 ; 3.897 ; 3.748 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3586 ; 3.897 ; 3.747 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2878 ; 3.832 ; 2.952 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2879 ; 3.832 ; 2.953 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4219 ; 5.851 ; 4.260 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7513 ;19.350 ;35.110 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7513 ;19.350 ;35.109 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7F1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 167253 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 45.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2DU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML IN 50 MM SODIUM ACETATE REMARK 280 (PH4.5) , 40% ETHYLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 66.14900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.14900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.61550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 66.14900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.14900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.61550 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 66.14900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.14900 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.61550 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 66.14900 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 66.14900 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.61550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 799 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 812 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 177 REMARK 465 SER A 178 REMARK 465 GLY A 179 REMARK 465 ARG A 183 REMARK 465 ASP A 184 REMARK 465 VAL A 185 REMARK 465 LYS A 186 REMARK 465 ASN A 187 REMARK 465 LYS A 188 REMARK 465 PHE A 189 REMARK 465 VAL A 190 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 ASN A 212 REMARK 465 ASN A 213 REMARK 465 ILE A 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 255 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 255 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 330 O HOH B 502 1.27 REMARK 500 O PHE B 324 O HOH B 503 1.28 REMARK 500 O GLY B 329 O HOH B 504 1.41 REMARK 500 O GLY B 333 O HOH B 505 1.43 REMARK 500 OE1 GLU A 247 O HOH A 501 1.44 REMARK 500 O3' FMN A 402 O HOH A 502 1.50 REMARK 500 O ILE A 222 O HOH A 503 1.51 REMARK 500 O HOH B 645 O HOH B 732 1.56 REMARK 500 O HOH B 578 O HOH B 662 1.58 REMARK 500 O HOH B 783 O HOH B 831 1.71 REMARK 500 O GLY B 325 O HOH B 506 1.77 REMARK 500 NE2 GLN B 332 O HOH B 507 1.77 REMARK 500 O HOH B 555 O HOH B 756 1.78 REMARK 500 O HOH A 739 O HOH A 753 1.78 REMARK 500 NH2 ARG A 52 O HOH A 504 1.79 REMARK 500 OH TYR A 370 O HOH A 505 1.81 REMARK 500 OD1 ASP B 248 O HOH B 508 1.81 REMARK 500 O HOH B 664 O HOH B 723 1.84 REMARK 500 OG SER B 297 O HOH B 509 1.84 REMARK 500 OG1 THR B 103 O HOH B 510 1.84 REMARK 500 OD2 ASP B 314 O HOH B 511 1.84 REMARK 500 NE2 HIS B 83 O HOH B 512 1.86 REMARK 500 NH2 ARG B 155 O HOH B 513 1.86 REMARK 500 CE2 TYR A 370 O HOH A 505 1.88 REMARK 500 O HOH A 609 O HOH A 739 1.91 REMARK 500 O HOH B 752 O HOH B 777 1.92 REMARK 500 N LEU B 328 O HOH B 503 1.93 REMARK 500 O GLY B 330 O HOH B 514 1.95 REMARK 500 O HOH B 794 O HOH B 814 1.96 REMARK 500 N ALA B 111 O HOH B 515 1.96 REMARK 500 O HOH A 697 O HOH A 733 1.96 REMARK 500 O GLN B 332 O HOH B 516 1.96 REMARK 500 O HOH A 511 O HOH A 673 1.97 REMARK 500 OD2 ASP A 367 O HOH A 506 1.99 REMARK 500 O HOH B 608 O HOH B 795 1.99 REMARK 500 O HOH B 772 O HOH B 785 2.00 REMARK 500 O HOH A 823 O HOH A 857 2.00 REMARK 500 O HOH B 542 O HOH B 620 2.00 REMARK 500 O HOH A 715 O HOH A 808 2.01 REMARK 500 O HOH B 550 O HOH B 747 2.01 REMARK 500 CZ TYR A 370 O HOH A 505 2.01 REMARK 500 NZ LYS A 221 O HOH A 507 2.01 REMARK 500 OG SER A 263 O HOH A 502 2.02 REMARK 500 O HOH A 616 O HOH A 803 2.02 REMARK 500 O HOH B 723 O HOH B 800 2.02 REMARK 500 O HOH B 552 O HOH B 732 2.03 REMARK 500 O HOH B 787 O HOH B 794 2.03 REMARK 500 O HOH B 831 O HOH B 841 2.03 REMARK 500 O HOH B 502 O HOH B 506 2.03 REMARK 500 OD2 ASP A 367 O HOH A 508 2.04 REMARK 500 REMARK 500 THIS ENTRY HAS 79 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 508 O HOH B 635 3655 1.47 REMARK 500 O HOH A 801 O HOH A 801 3655 1.97 REMARK 500 O HOH B 827 O HOH B 827 3655 2.00 REMARK 500 O HOH B 669 O HOH B 669 3655 2.01 REMARK 500 O HOH A 524 O HOH A 787 4565 2.02 REMARK 500 NH2 ARG B 181 NH1 ARG B 301 3655 2.08 REMARK 500 O HOH A 612 O HOH B 790 7544 2.13 REMARK 500 N ALA A 68 O HOH A 503 3655 2.13 REMARK 500 OE2 GLU B 373 O HOH B 518 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 247 CD GLU A 247 OE2 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 TYR A 370 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 370 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 66 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 181 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 181 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 TYR B 370 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 TYR B 370 CB - CG - CD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 104 -139.91 45.30 REMARK 500 TYR A 124 40.17 -109.27 REMARK 500 TYR A 201 14.72 -153.80 REMARK 500 GLN A 269 -108.18 -115.20 REMARK 500 SER A 297 91.29 106.24 REMARK 500 LYS B 104 -135.46 48.11 REMARK 500 SER B 175 -139.88 -170.97 REMARK 500 THR B 176 97.49 37.46 REMARK 500 VAL B 177 90.41 -7.18 REMARK 500 SER B 178 -115.13 -84.77 REMARK 500 ASN B 180 92.58 -45.33 REMARK 500 ARG B 181 19.25 107.50 REMARK 500 ASP B 182 -81.87 -59.13 REMARK 500 ARG B 183 92.93 -168.40 REMARK 500 ASP B 184 -38.32 -169.20 REMARK 500 LYS B 186 -74.83 -95.73 REMARK 500 LYS B 188 66.62 63.57 REMARK 500 GLN B 269 -105.32 -115.23 REMARK 500 SER B 297 92.46 107.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 175 THR B 176 -142.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 860 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 861 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A 863 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH A 864 DISTANCE = 9.75 ANGSTROMS DBREF 7F1Y A 7 374 UNP Q44467 Q44467_9LACT 7 374 DBREF 7F1Y B 7 374 UNP Q44467 Q44467_9LACT 7 374 SEQADV 7F1Y ALA A 232 UNP Q44467 GLY 232 CONFLICT SEQADV 7F1Y ALA B 232 UNP Q44467 GLY 232 CONFLICT SEQRES 1 A 368 GLU TYR ASN ALA PRO SER GLU ILE LYS TYR ILE ASP VAL SEQRES 2 A 368 VAL ASN THR TYR ASP LEU GLU GLU GLU ALA SER LYS VAL SEQRES 3 A 368 VAL PRO HIS GLY GLY PHE ASN TYR ILE ALA GLY ALA SER SEQRES 4 A 368 GLY ASP GLU TRP THR LYS ARG ALA ASN ASP ARG ALA TRP SEQRES 5 A 368 LYS HIS LYS LEU LEU TYR PRO ARG LEU ALA GLN ASP VAL SEQRES 6 A 368 GLU ALA PRO ASP THR SER THR GLU ILE LEU GLY HIS LYS SEQRES 7 A 368 ILE LYS ALA PRO PHE ILE MET ALA PRO ILE ALA ALA HIS SEQRES 8 A 368 GLY LEU ALA HIS THR THR LYS GLU ALA GLY THR ALA ARG SEQRES 9 A 368 ALA VAL SER GLU PHE GLY THR ILE MET SER ILE SER ALA SEQRES 10 A 368 TYR SER GLY ALA THR PHE GLU GLU ILE SER GLU GLY LEU SEQRES 11 A 368 ASN GLY GLY PRO ARG TRP PHE GLN ILE TYR MET ALA LYS SEQRES 12 A 368 ASP ASP GLN GLN ASN ARG ASP ILE LEU ASP GLU ALA LYS SEQRES 13 A 368 SER ASP GLY ALA THR ALA ILE ILE LEU THR ALA ASP SER SEQRES 14 A 368 THR VAL SER GLY ASN ARG ASP ARG ASP VAL LYS ASN LYS SEQRES 15 A 368 PHE VAL TYR PRO PHE GLY MET PRO ILE VAL GLN ARG TYR SEQRES 16 A 368 LEU ARG GLY THR ALA GLU GLY MET SER LEU ASN ASN ILE SEQRES 17 A 368 TYR GLY ALA SER LYS GLN LYS ILE SER PRO ARG ASP ILE SEQRES 18 A 368 GLU GLU ILE ALA ALA HIS SER GLY LEU PRO VAL PHE VAL SEQRES 19 A 368 LYS GLY ILE GLN HIS PRO GLU ASP ALA ASP MET ALA ILE SEQRES 20 A 368 LYS ARG GLY ALA SER GLY ILE TRP VAL SER ASN HIS GLY SEQRES 21 A 368 ALA ARG GLN LEU TYR GLU ALA PRO GLY SER PHE ASP THR SEQRES 22 A 368 LEU PRO ALA ILE ALA GLU ARG VAL ASN LYS ARG VAL PRO SEQRES 23 A 368 ILE VAL PHE ASP SER GLY VAL ARG ARG GLY GLU HIS VAL SEQRES 24 A 368 ALA LYS ALA LEU ALA SER GLY ALA ASP VAL VAL ALA LEU SEQRES 25 A 368 GLY ARG PRO VAL LEU PHE GLY LEU ALA LEU GLY GLY TRP SEQRES 26 A 368 GLN GLY ALA TYR SER VAL LEU ASP TYR PHE GLN LYS ASP SEQRES 27 A 368 LEU THR ARG VAL MET GLN LEU THR GLY SER GLN ASN VAL SEQRES 28 A 368 GLU ASP LEU LYS GLY LEU ASP LEU PHE ASP ASN PRO TYR SEQRES 29 A 368 GLY TYR GLU TYR SEQRES 1 B 368 GLU TYR ASN ALA PRO SER GLU ILE LYS TYR ILE ASP VAL SEQRES 2 B 368 VAL ASN THR TYR ASP LEU GLU GLU GLU ALA SER LYS VAL SEQRES 3 B 368 VAL PRO HIS GLY GLY PHE ASN TYR ILE ALA GLY ALA SER SEQRES 4 B 368 GLY ASP GLU TRP THR LYS ARG ALA ASN ASP ARG ALA TRP SEQRES 5 B 368 LYS HIS LYS LEU LEU TYR PRO ARG LEU ALA GLN ASP VAL SEQRES 6 B 368 GLU ALA PRO ASP THR SER THR GLU ILE LEU GLY HIS LYS SEQRES 7 B 368 ILE LYS ALA PRO PHE ILE MET ALA PRO ILE ALA ALA HIS SEQRES 8 B 368 GLY LEU ALA HIS THR THR LYS GLU ALA GLY THR ALA ARG SEQRES 9 B 368 ALA VAL SER GLU PHE GLY THR ILE MET SER ILE SER ALA SEQRES 10 B 368 TYR SER GLY ALA THR PHE GLU GLU ILE SER GLU GLY LEU SEQRES 11 B 368 ASN GLY GLY PRO ARG TRP PHE GLN ILE TYR MET ALA LYS SEQRES 12 B 368 ASP ASP GLN GLN ASN ARG ASP ILE LEU ASP GLU ALA LYS SEQRES 13 B 368 SER ASP GLY ALA THR ALA ILE ILE LEU THR ALA ASP SER SEQRES 14 B 368 THR VAL SER GLY ASN ARG ASP ARG ASP VAL LYS ASN LYS SEQRES 15 B 368 PHE VAL TYR PRO PHE GLY MET PRO ILE VAL GLN ARG TYR SEQRES 16 B 368 LEU ARG GLY THR ALA GLU GLY MET SER LEU ASN ASN ILE SEQRES 17 B 368 TYR GLY ALA SER LYS GLN LYS ILE SER PRO ARG ASP ILE SEQRES 18 B 368 GLU GLU ILE ALA ALA HIS SER GLY LEU PRO VAL PHE VAL SEQRES 19 B 368 LYS GLY ILE GLN HIS PRO GLU ASP ALA ASP MET ALA ILE SEQRES 20 B 368 LYS ARG GLY ALA SER GLY ILE TRP VAL SER ASN HIS GLY SEQRES 21 B 368 ALA ARG GLN LEU TYR GLU ALA PRO GLY SER PHE ASP THR SEQRES 22 B 368 LEU PRO ALA ILE ALA GLU ARG VAL ASN LYS ARG VAL PRO SEQRES 23 B 368 ILE VAL PHE ASP SER GLY VAL ARG ARG GLY GLU HIS VAL SEQRES 24 B 368 ALA LYS ALA LEU ALA SER GLY ALA ASP VAL VAL ALA LEU SEQRES 25 B 368 GLY ARG PRO VAL LEU PHE GLY LEU ALA LEU GLY GLY TRP SEQRES 26 B 368 GLN GLY ALA TYR SER VAL LEU ASP TYR PHE GLN LYS ASP SEQRES 27 B 368 LEU THR ARG VAL MET GLN LEU THR GLY SER GLN ASN VAL SEQRES 28 B 368 GLU ASP LEU LYS GLY LEU ASP LEU PHE ASP ASN PRO TYR SEQRES 29 B 368 GLY TYR GLU TYR HET ACT A 401 4 HET FMN A 402 31 HET EDO A 403 4 HET ACT B 401 4 HET FMN B 402 31 HET EDO B 403 4 HETNAM ACT ACETATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 9 HOH *728(H2 O) HELIX 1 AA1 THR A 22 LYS A 31 1 10 HELIX 2 AA2 PRO A 34 GLY A 43 1 10 HELIX 3 AA3 GLU A 48 ALA A 57 1 10 HELIX 4 AA4 ALA A 96 ALA A 100 5 5 HELIX 5 AA5 THR A 103 GLY A 116 1 14 HELIX 6 AA6 THR A 128 ASN A 137 1 10 HELIX 7 AA7 ASP A 150 ASP A 164 1 15 HELIX 8 AA8 SER A 223 SER A 234 1 12 HELIX 9 AA9 HIS A 245 ARG A 255 1 11 HELIX 10 AB1 GLY A 275 ASN A 288 1 14 HELIX 11 AB2 ARG A 301 SER A 311 1 11 HELIX 12 AB3 GLY A 319 GLY A 353 1 35 HELIX 13 AB4 ASN A 356 GLY A 362 1 7 HELIX 14 AB5 THR B 22 LYS B 31 1 10 HELIX 15 AB6 PRO B 34 GLY B 43 1 10 HELIX 16 AB7 GLU B 48 ALA B 57 1 10 HELIX 17 AB8 ALA B 96 ALA B 100 5 5 HELIX 18 AB9 THR B 103 GLY B 116 1 14 HELIX 19 AC1 THR B 128 ASN B 137 1 10 HELIX 20 AC2 ASP B 150 ASP B 164 1 15 HELIX 21 AC3 MET B 195 ARG B 203 1 9 HELIX 22 AC4 THR B 205 MET B 209 5 5 HELIX 23 AC5 SER B 210 ALA B 217 1 8 HELIX 24 AC6 SER B 223 SER B 234 1 12 HELIX 25 AC7 HIS B 245 ARG B 255 1 11 HELIX 26 AC8 GLY B 275 ASN B 288 1 14 HELIX 27 AC9 ARG B 301 SER B 311 1 11 HELIX 28 AD1 GLY B 319 GLY B 353 1 35 HELIX 29 AD2 ASN B 356 GLY B 362 1 7 SHEET 1 AA1 2 LYS A 61 LEU A 63 0 SHEET 2 AA1 2 LEU A 365 ASP A 367 -1 O PHE A 366 N LEU A 62 SHEET 1 AA2 2 THR A 78 ILE A 80 0 SHEET 2 AA2 2 HIS A 83 ILE A 85 -1 O ILE A 85 N THR A 78 SHEET 1 AA3 8 PHE A 89 MET A 91 0 SHEET 2 AA3 8 VAL A 315 LEU A 318 1 O LEU A 318 N ILE A 90 SHEET 3 AA3 8 ILE A 293 PHE A 295 1 N PHE A 295 O ALA A 317 SHEET 4 AA3 8 GLY A 259 VAL A 262 1 N VAL A 262 O VAL A 294 SHEET 5 AA3 8 VAL A 238 ILE A 243 1 N VAL A 240 O TRP A 261 SHEET 6 AA3 8 ILE A 169 THR A 172 1 N LEU A 171 O PHE A 239 SHEET 7 AA3 8 ARG A 141 ILE A 145 1 N ILE A 145 O ILE A 170 SHEET 8 AA3 8 MET A 119 ILE A 121 1 N ILE A 121 O GLN A 144 SHEET 1 AA4 2 LYS B 61 LEU B 63 0 SHEET 2 AA4 2 LEU B 365 ASP B 367 -1 O PHE B 366 N LEU B 62 SHEET 1 AA5 2 THR B 78 ILE B 80 0 SHEET 2 AA5 2 HIS B 83 ILE B 85 -1 O ILE B 85 N THR B 78 SHEET 1 AA6 8 PHE B 89 MET B 91 0 SHEET 2 AA6 8 VAL B 315 LEU B 318 1 O LEU B 318 N ILE B 90 SHEET 3 AA6 8 ILE B 293 PHE B 295 1 N PHE B 295 O ALA B 317 SHEET 4 AA6 8 GLY B 259 VAL B 262 1 N VAL B 262 O VAL B 294 SHEET 5 AA6 8 VAL B 238 ILE B 243 1 N VAL B 240 O TRP B 261 SHEET 6 AA6 8 ILE B 169 THR B 172 1 N LEU B 171 O PHE B 239 SHEET 7 AA6 8 ARG B 141 ILE B 145 1 N ILE B 145 O ILE B 170 SHEET 8 AA6 8 MET B 119 SER B 122 1 N ILE B 121 O GLN B 144 CRYST1 132.298 132.298 91.231 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007559 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010961 0.00000