HEADER TRANSCRIPTION 10-JUN-21 7F2F TITLE THE COMPLEX OF DNA WITH THE C-TERMINAL DOMAIN OF TYE7 FROM TITLE 2 SACCHAROMYCES CEREVISIAE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-RICH PROTEIN TYE7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BASIC-HELIX-LOOP-HELIX PROTEIN SGC1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*AP*GP*AP*TP*CP*AP*TP*GP*TP*GP*TP*GP*CP*C)- COMPND 8 3'); COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*GP*GP*CP*AP*CP*AP*CP*AP*TP*GP*AP*TP*CP*T)- COMPND 13 3'); COMPND 14 CHAIN: H; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 GENE: TYE7, SGC1, YOR344C, O6233; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS GLYCOLYSIS, BHLH TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.GUI REVDAT 2 29-NOV-23 7F2F 1 REMARK REVDAT 1 13-OCT-21 7F2F 0 JRNL AUTH W.GUI,L.XUE,J.YUE,Z.KUANG,Y.JIN,L.NIU JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF DNA WITH THE C-TERMINAL JRNL TITL 2 DOMAIN OF TYE7 FROM SACCHAROMYCES CEREVISIAE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 77 341 2021 JRNL REFN ESSN 2053-230X JRNL DOI 10.1107/S2053230X21009250 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 838 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.4340 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.5240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1544 REMARK 3 NUCLEIC ACID ATOMS : 593 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.31000 REMARK 3 B22 (A**2) : 2.31000 REMARK 3 B33 (A**2) : -4.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2274 ; 0.014 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 1935 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3189 ; 1.884 ; 1.697 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4466 ; 1.227 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 184 ; 7.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;35.760 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 331 ;16.773 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2124 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 516 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7F2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 67.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1AM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH7.5, 10% W/V PEG 8000, REMARK 280 11% V/V ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.89100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.51250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.51250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.44550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.51250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.51250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.33650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.51250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.51250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.44550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.51250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.51250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 136.33650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.89100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 164 REMARK 465 ALA A 165 REMARK 465 LYS A 166 REMARK 465 GLU A 167 REMARK 465 THR A 168 REMARK 465 LYS A 169 REMARK 465 LYS A 170 REMARK 465 ARG A 171 REMARK 465 ALA A 172 REMARK 465 PRO A 173 REMARK 465 ARG A 174 REMARK 465 LYS A 175 REMARK 465 ARG A 176 REMARK 465 SER A 222 REMARK 465 VAL A 223 REMARK 465 LYS A 224 REMARK 465 LYS A 225 REMARK 465 GLN A 226 REMARK 465 ASP A 227 REMARK 465 GLU A 228 REMARK 465 ASP A 229 REMARK 465 GLY A 230 REMARK 465 ALA A 231 REMARK 465 GLU A 232 REMARK 465 THR A 233 REMARK 465 ALA A 234 REMARK 465 ALA A 235 REMARK 465 THR A 236 REMARK 465 THR A 237 REMARK 465 PRO A 238 REMARK 465 LEU A 239 REMARK 465 PRO A 240 REMARK 465 SER A 241 REMARK 465 ALA A 242 REMARK 465 ALA A 243 REMARK 465 ALA A 244 REMARK 465 THR A 245 REMARK 465 LYS A 291 REMARK 465 LEU A 292 REMARK 465 GLU A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 MET B 164 REMARK 465 ALA B 165 REMARK 465 LYS B 166 REMARK 465 GLU B 167 REMARK 465 THR B 168 REMARK 465 LYS B 169 REMARK 465 LYS B 170 REMARK 465 ARG B 171 REMARK 465 ALA B 172 REMARK 465 PRO B 173 REMARK 465 ARG B 174 REMARK 465 LYS B 175 REMARK 465 ARG B 176 REMARK 465 ASP B 221 REMARK 465 SER B 222 REMARK 465 VAL B 223 REMARK 465 LYS B 224 REMARK 465 LYS B 225 REMARK 465 GLN B 226 REMARK 465 ASP B 227 REMARK 465 GLU B 228 REMARK 465 ASP B 229 REMARK 465 GLY B 230 REMARK 465 ALA B 231 REMARK 465 GLU B 232 REMARK 465 THR B 233 REMARK 465 ALA B 234 REMARK 465 ALA B 235 REMARK 465 THR B 236 REMARK 465 THR B 237 REMARK 465 PRO B 238 REMARK 465 LEU B 239 REMARK 465 PRO B 240 REMARK 465 SER B 241 REMARK 465 ALA B 242 REMARK 465 ALA B 243 REMARK 465 ALA B 244 REMARK 465 THR B 245 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 DC E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 192 OP2 DC E 6 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT E 8 O5' - P - OP1 ANGL. DEV. = 9.9 DEGREES REMARK 500 DT E 8 O5' - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 182 -73.42 -51.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F2F A 165 291 UNP P33122 TYE7_YEAST 165 291 DBREF 7F2F B 165 291 UNP P33122 TYE7_YEAST 165 291 DBREF 7F2F E 1 15 PDB 7F2F 7F2F 1 15 DBREF 7F2F H 1 15 PDB 7F2F 7F2F 1 15 SEQADV 7F2F MET A 164 UNP P33122 EXPRESSION TAG SEQADV 7F2F LEU A 292 UNP P33122 EXPRESSION TAG SEQADV 7F2F GLU A 293 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS A 294 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS A 295 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS A 296 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS A 297 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS A 298 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS A 299 UNP P33122 EXPRESSION TAG SEQADV 7F2F MET B 164 UNP P33122 EXPRESSION TAG SEQADV 7F2F LEU B 292 UNP P33122 EXPRESSION TAG SEQADV 7F2F GLU B 293 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS B 294 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS B 295 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS B 296 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS B 297 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS B 298 UNP P33122 EXPRESSION TAG SEQADV 7F2F HIS B 299 UNP P33122 EXPRESSION TAG SEQRES 1 A 136 MET ALA LYS GLU THR LYS LYS ARG ALA PRO ARG LYS ARG SEQRES 2 A 136 LEU THR PRO PHE GLN LYS GLN ALA HIS ASN LYS ILE GLU SEQRES 3 A 136 LYS ARG TYR ARG ILE ASN ILE ASN THR LYS ILE ALA ARG SEQRES 4 A 136 LEU GLN GLN ILE ILE PRO TRP VAL ALA SER GLU GLN THR SEQRES 5 A 136 ALA PHE GLU VAL GLY ASP SER VAL LYS LYS GLN ASP GLU SEQRES 6 A 136 ASP GLY ALA GLU THR ALA ALA THR THR PRO LEU PRO SER SEQRES 7 A 136 ALA ALA ALA THR SER THR LYS LEU ASN LYS SER MET ILE SEQRES 8 A 136 LEU GLU LYS ALA VAL ASP TYR ILE LEU TYR LEU GLN ASN SEQRES 9 A 136 ASN GLU ARG LEU TYR GLU MET GLU VAL GLN ARG LEU LYS SEQRES 10 A 136 SER GLU ILE ASP THR LEU LYS GLN ASP GLN LYS LEU GLU SEQRES 11 A 136 HIS HIS HIS HIS HIS HIS SEQRES 1 B 136 MET ALA LYS GLU THR LYS LYS ARG ALA PRO ARG LYS ARG SEQRES 2 B 136 LEU THR PRO PHE GLN LYS GLN ALA HIS ASN LYS ILE GLU SEQRES 3 B 136 LYS ARG TYR ARG ILE ASN ILE ASN THR LYS ILE ALA ARG SEQRES 4 B 136 LEU GLN GLN ILE ILE PRO TRP VAL ALA SER GLU GLN THR SEQRES 5 B 136 ALA PHE GLU VAL GLY ASP SER VAL LYS LYS GLN ASP GLU SEQRES 6 B 136 ASP GLY ALA GLU THR ALA ALA THR THR PRO LEU PRO SER SEQRES 7 B 136 ALA ALA ALA THR SER THR LYS LEU ASN LYS SER MET ILE SEQRES 8 B 136 LEU GLU LYS ALA VAL ASP TYR ILE LEU TYR LEU GLN ASN SEQRES 9 B 136 ASN GLU ARG LEU TYR GLU MET GLU VAL GLN ARG LEU LYS SEQRES 10 B 136 SER GLU ILE ASP THR LEU LYS GLN ASP GLN LYS LEU GLU SEQRES 11 B 136 HIS HIS HIS HIS HIS HIS SEQRES 1 E 15 DC DA DG DA DT DC DA DT DG DT DG DT DG SEQRES 2 E 15 DC DC SEQRES 1 H 15 DG DG DG DC DA DC DA DC DA DT DG DA DT SEQRES 2 H 15 DC DT HELIX 1 AA1 THR A 178 ILE A 206 1 29 HELIX 2 AA2 ASN A 250 GLN A 288 1 39 HELIX 3 AA3 THR B 178 ILE B 207 1 30 HELIX 4 AA4 ASN B 250 GLU B 293 1 44 SHEET 1 AA1 2 GLN B 214 THR B 215 0 SHEET 2 AA1 2 LYS B 248 LEU B 249 1 O LEU B 249 N GLN B 214 CRYST1 73.025 73.025 181.782 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005501 0.00000