HEADER OXIDOREDUCTASE 14-JUN-21 7F2W TITLE TBUOX IN COMPLEX WITH URIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: URICASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: URATE OXIDASE; COMPND 5 EC: 1.7.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBISPORA BISPORA (STRAIN ATCC 19993 / DSM SOURCE 3 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51); SOURCE 4 ORGANISM_TAXID: 469371; SOURCE 5 STRAIN: ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 SOURCE 6 / R51; SOURCE 7 GENE: TBIS_2592; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS URICASE, URATE OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.CHIU,T.S.HSU,C.Y.HUANG,C.H.HSU REVDAT 2 29-NOV-23 7F2W 1 REMARK REVDAT 1 04-MAY-22 7F2W 0 JRNL AUTH Y.C.CHIU,T.S.HSU,C.Y.HUANG,C.H.HSU JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO A HYPERTHERMOSTABLE JRNL TITL 2 URATE OXIDASE FROM THERMOBISPORA BISPORA FOR HYPERURICEMIA JRNL TITL 3 AND GOUT THERAPY. JRNL REF INT.J.BIOL.MACROMOL. V. 188 914 2021 JRNL REFN ISSN 0141-8130 JRNL PMID 34403675 JRNL DOI 10.1016/J.IJBIOMAC.2021.08.081 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5800 - 5.2000 0.99 2770 153 0.1456 0.1773 REMARK 3 2 5.2000 - 4.1300 0.99 2663 147 0.1186 0.1337 REMARK 3 3 4.1300 - 3.6100 1.00 2631 145 0.1428 0.1621 REMARK 3 4 3.6100 - 3.2800 1.00 2626 145 0.1582 0.1874 REMARK 3 5 3.2800 - 3.0400 1.00 2605 142 0.1710 0.2192 REMARK 3 6 3.0400 - 2.8600 1.00 2597 144 0.1797 0.2375 REMARK 3 7 2.8600 - 2.7200 1.00 2616 144 0.1732 0.2394 REMARK 3 8 2.7200 - 2.6000 1.00 2596 143 0.1667 0.2245 REMARK 3 9 2.6000 - 2.5000 1.00 2588 143 0.1731 0.2251 REMARK 3 10 2.5000 - 2.4200 1.00 2594 143 0.1709 0.2387 REMARK 3 11 2.4200 - 2.3400 1.00 2594 143 0.1738 0.2417 REMARK 3 12 2.3400 - 2.2700 1.00 2551 141 0.1898 0.2701 REMARK 3 13 2.2700 - 2.2100 0.99 2563 141 0.1945 0.2629 REMARK 3 14 2.2100 - 2.1600 0.89 2284 126 0.2021 0.2698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8643 10.6776 51.7916 REMARK 3 T TENSOR REMARK 3 T11: 0.2207 T22: 0.1879 REMARK 3 T33: 0.2084 T12: 0.0225 REMARK 3 T13: 0.0200 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1865 L22: 0.0058 REMARK 3 L33: 0.3130 L12: 0.1017 REMARK 3 L13: 0.1829 L23: -0.2128 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.0505 S13: -0.0735 REMARK 3 S21: 0.1271 S22: 0.0517 S23: -0.0220 REMARK 3 S31: 0.1333 S32: -0.0932 S33: 0.0026 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6671 5.9565 51.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.2005 REMARK 3 T33: 0.2139 T12: 0.0387 REMARK 3 T13: -0.0074 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.2572 L22: 0.3634 REMARK 3 L33: 0.2053 L12: -0.0436 REMARK 3 L13: 0.1173 L23: -0.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.0789 S13: -0.1585 REMARK 3 S21: 0.0986 S22: -0.0001 S23: 0.0033 REMARK 3 S31: 0.1042 S32: 0.0161 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8498 0.6842 44.1868 REMARK 3 T TENSOR REMARK 3 T11: 0.2284 T22: 0.2144 REMARK 3 T33: 0.2123 T12: -0.0000 REMARK 3 T13: -0.0033 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.0792 L22: 0.2491 REMARK 3 L33: 0.3334 L12: -0.0711 REMARK 3 L13: 0.0499 L23: 0.2126 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: 0.0051 S13: 0.0378 REMARK 3 S21: -0.0031 S22: 0.0063 S23: 0.0941 REMARK 3 S31: 0.0882 S32: -0.0459 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5466 -0.4215 22.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.1897 REMARK 3 T33: 0.2204 T12: 0.0190 REMARK 3 T13: -0.0051 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.2795 L22: 0.2207 REMARK 3 L33: 0.1378 L12: -0.2027 REMARK 3 L13: -0.1120 L23: 0.0612 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.0691 S13: -0.0979 REMARK 3 S21: -0.0418 S22: 0.0107 S23: 0.0399 REMARK 3 S31: 0.1552 S32: 0.0441 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.6184 6.3600 22.2698 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.1345 REMARK 3 T33: 0.1622 T12: 0.0114 REMARK 3 T13: -0.0079 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.2157 L22: 0.1667 REMARK 3 L33: 0.1656 L12: -0.0352 REMARK 3 L13: 0.2092 L23: -0.1614 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.0848 S13: -0.0861 REMARK 3 S21: -0.0688 S22: 0.0101 S23: 0.0572 REMARK 3 S31: 0.0623 S32: -0.0476 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7720 13.5614 16.4492 REMARK 3 T TENSOR REMARK 3 T11: 0.1784 T22: 0.2122 REMARK 3 T33: 0.2130 T12: 0.0242 REMARK 3 T13: -0.0260 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.1502 L22: 0.1312 REMARK 3 L33: 0.4004 L12: -0.0403 REMARK 3 L13: -0.0409 L23: -0.3016 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.0452 S13: -0.0630 REMARK 3 S21: 0.0219 S22: 0.0599 S23: 0.1721 REMARK 3 S31: 0.0297 S32: -0.1095 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7991 20.1451 10.9269 REMARK 3 T TENSOR REMARK 3 T11: 0.2580 T22: 0.2710 REMARK 3 T33: 0.2404 T12: 0.0383 REMARK 3 T13: -0.0093 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.0353 L22: 0.0975 REMARK 3 L33: 0.1358 L12: 0.0522 REMARK 3 L13: 0.0127 L23: -0.0760 REMARK 3 S TENSOR REMARK 3 S11: -0.1597 S12: -0.0471 S13: -0.2149 REMARK 3 S21: 0.1755 S22: 0.1926 S23: 0.2317 REMARK 3 S31: -0.0695 S32: -0.0648 S33: -0.0009 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1316 13.7132 16.4838 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.2118 REMARK 3 T33: 0.2106 T12: 0.0346 REMARK 3 T13: -0.0364 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0790 L22: 0.0802 REMARK 3 L33: 0.0657 L12: -0.0655 REMARK 3 L13: -0.0481 L23: -0.0121 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: 0.0213 S13: -0.1538 REMARK 3 S21: 0.0814 S22: 0.0420 S23: 0.1027 REMARK 3 S31: -0.1014 S32: -0.0894 S33: -0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9313 43.1917 22.0461 REMARK 3 T TENSOR REMARK 3 T11: 0.3103 T22: 0.2258 REMARK 3 T33: 0.2916 T12: 0.1195 REMARK 3 T13: 0.0209 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.0925 L22: 0.0590 REMARK 3 L33: 0.0141 L12: -0.0236 REMARK 3 L13: 0.0344 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.0465 S13: 0.0837 REMARK 3 S21: 0.1779 S22: -0.1010 S23: 0.2585 REMARK 3 S31: -0.0452 S32: -0.3461 S33: -0.0048 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5448 18.2582 24.5013 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.2656 REMARK 3 T33: 0.2173 T12: 0.0316 REMARK 3 T13: -0.0246 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.2270 L22: 0.0723 REMARK 3 L33: 0.3754 L12: -0.0589 REMARK 3 L13: 0.0089 L23: -0.1693 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.0345 S13: -0.0058 REMARK 3 S21: -0.0641 S22: -0.0918 S23: 0.1638 REMARK 3 S31: -0.1188 S32: -0.2298 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1476 23.4145 58.0977 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.2411 REMARK 3 T33: 0.1902 T12: 0.0574 REMARK 3 T13: 0.0482 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.3068 L22: 0.0747 REMARK 3 L33: 0.0955 L12: 0.0047 REMARK 3 L13: -0.0897 L23: 0.0783 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: -0.0878 S13: -0.0058 REMARK 3 S21: 0.2239 S22: 0.1653 S23: 0.0677 REMARK 3 S31: -0.0866 S32: -0.2490 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2764 24.9635 35.1665 REMARK 3 T TENSOR REMARK 3 T11: 0.1573 T22: 0.3066 REMARK 3 T33: 0.1941 T12: 0.0602 REMARK 3 T13: 0.0138 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.1803 L22: 0.0985 REMARK 3 L33: 0.0677 L12: 0.1699 REMARK 3 L13: -0.0150 L23: 0.0168 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: 0.0134 S13: 0.0365 REMARK 3 S21: 0.0631 S22: -0.1034 S23: 0.0375 REMARK 3 S31: 0.1170 S32: -0.3019 S33: 0.0017 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8754 23.0683 48.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.2627 REMARK 3 T33: 0.2359 T12: 0.0523 REMARK 3 T13: 0.0508 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.0281 L22: 0.0387 REMARK 3 L33: 0.0496 L12: 0.0172 REMARK 3 L13: -0.0305 L23: -0.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.1419 S13: -0.0263 REMARK 3 S21: 0.0616 S22: 0.0324 S23: 0.1447 REMARK 3 S31: 0.0550 S32: -0.2820 S33: -0.0007 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 236 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9930 25.0486 48.5936 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.2960 REMARK 3 T33: 0.2368 T12: 0.0332 REMARK 3 T13: 0.0346 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.1268 L22: 0.2146 REMARK 3 L33: -0.0003 L12: -0.0832 REMARK 3 L13: 0.0498 L23: -0.0206 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.0567 S13: -0.0662 REMARK 3 S21: 0.1430 S22: -0.0270 S23: -0.0036 REMARK 3 S31: 0.1567 S32: -0.0040 S33: 0.0010 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 260 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5218 18.5439 43.8087 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.2383 REMARK 3 T33: 0.2328 T12: 0.0253 REMARK 3 T13: 0.0074 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.2334 L22: -0.0627 REMARK 3 L33: 0.0951 L12: 0.0918 REMARK 3 L13: 0.1346 L23: 0.0377 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: -0.0600 S13: 0.0005 REMARK 3 S21: 0.0594 S22: -0.0057 S23: 0.0859 REMARK 3 S31: 0.0042 S32: -0.0847 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 28.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 92.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6OE8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE TRIHYDRATE, REMARK 280 MAGNESIUM ACETATE TETRAHYDRATE, PEG8000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 73.18100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.20350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 73.18100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.20350 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 73.18100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.20350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 73.18100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.20350 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 73.18100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.20350 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 73.18100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.20350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 73.18100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.20350 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 73.18100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 73.18100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.20350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 73.18100 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 73.18100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 66.20350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 667 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 545 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 614 O HOH A 614 16555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 74 -109.12 -100.36 REMARK 500 HIS A 118 20.95 -141.56 REMARK 500 PHE A 162 102.89 -162.84 REMARK 500 ASP A 178 115.46 -160.76 REMARK 500 ALA A 220 155.02 178.59 REMARK 500 ARG B 74 -107.71 -101.44 REMARK 500 HIS B 118 26.73 -141.52 REMARK 500 PHE B 162 103.36 -161.15 REMARK 500 ASP B 195 75.25 -104.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F2W A 1 301 UNP D6Y599 D6Y599_THEBD 1 301 DBREF 7F2W B 1 301 UNP D6Y599 D6Y599_THEBD 1 301 SEQADV 7F2W GLY A -2 UNP D6Y599 EXPRESSION TAG SEQADV 7F2W SER A -1 UNP D6Y599 EXPRESSION TAG SEQADV 7F2W HIS A 0 UNP D6Y599 EXPRESSION TAG SEQADV 7F2W GLY B -2 UNP D6Y599 EXPRESSION TAG SEQADV 7F2W SER B -1 UNP D6Y599 EXPRESSION TAG SEQADV 7F2W HIS B 0 UNP D6Y599 EXPRESSION TAG SEQRES 1 A 304 GLY SER HIS MET ALA ILE VAL LEU GLY ARG ASN GLN TYR SEQRES 2 A 304 GLY LYS ALA GLU VAL ARG VAL PHE ARG VAL TYR ARG ASP SEQRES 3 A 304 THR PRO ARG HIS GLU VAL ARG ASP LEU ASN VAL TRP THR SEQRES 4 A 304 ALA LEU ARG GLY ASP PHE THR ASP ALA HIS VAL THR GLY SEQRES 5 A 304 ASP GLN SER HIS VAL LEU PRO THR ASP THR GLN LYS ASN SEQRES 6 A 304 THR VAL TYR ALA LEU ALA LYS LYS GLU GLY ILE ARG ALA SEQRES 7 A 304 ILE GLU ASP PHE ALA LEU THR LEU GLY ASP HIS PHE LEU SEQRES 8 A 304 ARG GLN VAL PRO ALA ALA THR GLY ALA ARG ILE ALA ILE SEQRES 9 A 304 GLU GLU TYR ALA TRP ASP ARG ILE ASP VAL ASP GLY THR SEQRES 10 A 304 GLY HIS ASP HIS GLY PHE VAL ARG ARG GLY GLN GLY THR SEQRES 11 A 304 ARG THR THR VAL VAL THR VAL GLU GLY ARG GLY ASP GLU SEQRES 12 A 304 ARG ARG ALA TRP VAL LEU SER GLY ILE SER ASP LEU ILE SEQRES 13 A 304 ILE ALA LYS THR THR GLY SER GLU PHE HIS GLY PHE LEU SEQRES 14 A 304 LYS ASP GLU TYR THR THR LEU GLU GLU THR HIS ASP ARG SEQRES 15 A 304 ILE LEU ALA THR SER LEU HIS THR ARG TRP ARG TYR LEU SEQRES 16 A 304 THR THR ASP VAL ASP TRP ASP LYS THR PHE ALA SER VAL SEQRES 17 A 304 ARG SER ILE LEU LEU ARG GLN PHE ALA THR VAL HIS SER SEQRES 18 A 304 LEU ALA LEU GLN GLN THR LEU TYR ALA MET GLY SER ALA SEQRES 19 A 304 VAL LEU GLU ALA HIS PRO GLU ILE ALA GLU ILE ARG LEU SEQRES 20 A 304 SER ALA PRO ASN LYS HIS HIS PHE LEU VAL ASP LEU GLN SEQRES 21 A 304 PRO PHE GLY LEU ASP ASN PRO GLY GLU VAL PHE TYR ALA SEQRES 22 A 304 SER ASP ARG PRO TYR GLY LEU ILE GLU ALA SER VAL VAL SEQRES 23 A 304 ARG ASP ASP VAL PRO GLU ALA PRO GLU ALA TRP LEU ALA SEQRES 24 A 304 THR PRO GLY PHE CYS SEQRES 1 B 304 GLY SER HIS MET ALA ILE VAL LEU GLY ARG ASN GLN TYR SEQRES 2 B 304 GLY LYS ALA GLU VAL ARG VAL PHE ARG VAL TYR ARG ASP SEQRES 3 B 304 THR PRO ARG HIS GLU VAL ARG ASP LEU ASN VAL TRP THR SEQRES 4 B 304 ALA LEU ARG GLY ASP PHE THR ASP ALA HIS VAL THR GLY SEQRES 5 B 304 ASP GLN SER HIS VAL LEU PRO THR ASP THR GLN LYS ASN SEQRES 6 B 304 THR VAL TYR ALA LEU ALA LYS LYS GLU GLY ILE ARG ALA SEQRES 7 B 304 ILE GLU ASP PHE ALA LEU THR LEU GLY ASP HIS PHE LEU SEQRES 8 B 304 ARG GLN VAL PRO ALA ALA THR GLY ALA ARG ILE ALA ILE SEQRES 9 B 304 GLU GLU TYR ALA TRP ASP ARG ILE ASP VAL ASP GLY THR SEQRES 10 B 304 GLY HIS ASP HIS GLY PHE VAL ARG ARG GLY GLN GLY THR SEQRES 11 B 304 ARG THR THR VAL VAL THR VAL GLU GLY ARG GLY ASP GLU SEQRES 12 B 304 ARG ARG ALA TRP VAL LEU SER GLY ILE SER ASP LEU ILE SEQRES 13 B 304 ILE ALA LYS THR THR GLY SER GLU PHE HIS GLY PHE LEU SEQRES 14 B 304 LYS ASP GLU TYR THR THR LEU GLU GLU THR HIS ASP ARG SEQRES 15 B 304 ILE LEU ALA THR SER LEU HIS THR ARG TRP ARG TYR LEU SEQRES 16 B 304 THR THR ASP VAL ASP TRP ASP LYS THR PHE ALA SER VAL SEQRES 17 B 304 ARG SER ILE LEU LEU ARG GLN PHE ALA THR VAL HIS SER SEQRES 18 B 304 LEU ALA LEU GLN GLN THR LEU TYR ALA MET GLY SER ALA SEQRES 19 B 304 VAL LEU GLU ALA HIS PRO GLU ILE ALA GLU ILE ARG LEU SEQRES 20 B 304 SER ALA PRO ASN LYS HIS HIS PHE LEU VAL ASP LEU GLN SEQRES 21 B 304 PRO PHE GLY LEU ASP ASN PRO GLY GLU VAL PHE TYR ALA SEQRES 22 B 304 SER ASP ARG PRO TYR GLY LEU ILE GLU ALA SER VAL VAL SEQRES 23 B 304 ARG ASP ASP VAL PRO GLU ALA PRO GLU ALA TRP LEU ALA SEQRES 24 B 304 THR PRO GLY PHE CYS HET URC A 401 12 HET URC B 401 12 HETNAM URC URIC ACID HETSYN URC 7,9-DIHYDRO-1H-PURINE-2,6,8(3H)-TRIONE FORMUL 3 URC 2(C5 H4 N4 O3) FORMUL 5 HOH *437(H2 O) HELIX 1 AA1 PHE A 42 THR A 48 1 7 HELIX 2 AA2 PRO A 56 GLU A 71 1 16 HELIX 3 AA3 ALA A 75 VAL A 91 1 17 HELIX 4 AA4 ARG A 137 ARG A 141 5 5 HELIX 5 AA5 ASP A 197 VAL A 216 1 20 HELIX 6 AA6 ALA A 220 HIS A 236 1 17 HELIX 7 AA7 LEU A 256 GLY A 260 5 5 HELIX 8 AA8 ALA A 290 LEU A 295 1 6 HELIX 9 AA9 PHE B 42 THR B 48 1 7 HELIX 10 AB1 PRO B 56 GLU B 71 1 16 HELIX 11 AB2 ALA B 75 VAL B 91 1 17 HELIX 12 AB3 ARG B 137 ARG B 141 5 5 HELIX 13 AB4 ASP B 197 VAL B 216 1 20 HELIX 14 AB5 ALA B 220 HIS B 236 1 17 HELIX 15 AB6 LEU B 256 GLY B 260 5 5 HELIX 16 AB7 ALA B 290 LEU B 295 1 6 SHEET 1 AA1 9 ILE A 3 ALA A 13 0 SHEET 2 AA1 9 TYR B 275 ARG B 284 -1 O TYR B 275 N ALA A 13 SHEET 3 AA1 9 ILE B 239 ASN B 248 -1 N LEU B 244 O ALA B 280 SHEET 4 AA1 9 LEU B 181 TYR B 191 -1 N ARG B 190 O ALA B 240 SHEET 5 AA1 9 ARG B 142 LYS B 156 -1 N SER B 147 O TRP B 189 SHEET 6 AA1 9 THR B 127 GLU B 135 -1 N GLU B 135 O ARG B 142 SHEET 7 AA1 9 ALA B 94 GLU B 103 -1 N ILE B 99 O VAL B 132 SHEET 8 AA1 9 GLU B 28 GLY B 40 -1 N ARG B 39 O GLY B 96 SHEET 9 AA1 9 VAL B 15 TYR B 21 -1 N VAL B 15 O VAL B 34 SHEET 1 AA2 9 VAL A 15 TYR A 21 0 SHEET 2 AA2 9 GLU A 28 GLY A 40 -1 O VAL A 34 N VAL A 15 SHEET 3 AA2 9 ALA A 94 GLU A 103 -1 O ARG A 98 N ALA A 37 SHEET 4 AA2 9 THR A 127 GLU A 135 -1 O VAL A 132 N ILE A 99 SHEET 5 AA2 9 ARG A 142 LYS A 156 -1 O ARG A 142 N GLU A 135 SHEET 6 AA2 9 LEU A 181 TYR A 191 -1 O TRP A 189 N SER A 147 SHEET 7 AA2 9 ILE A 239 ASN A 248 -1 O ARG A 243 N ARG A 188 SHEET 8 AA2 9 TYR A 275 ARG A 284 -1 O ALA A 280 N LEU A 244 SHEET 9 AA2 9 ILE B 3 ALA B 13 -1 O ALA B 13 N TYR A 275 SHEET 1 AA3 2 TRP A 106 VAL A 111 0 SHEET 2 AA3 2 THR A 114 ARG A 122 -1 O VAL A 121 N ASP A 107 SHEET 1 AA4 2 HIS A 251 LEU A 253 0 SHEET 2 AA4 2 PHE A 268 ALA A 270 -1 O TYR A 269 N PHE A 252 SHEET 1 AA5 2 TRP B 106 VAL B 111 0 SHEET 2 AA5 2 THR B 114 ARG B 122 -1 O VAL B 121 N ASP B 107 SHEET 1 AA6 2 HIS B 251 LEU B 253 0 SHEET 2 AA6 2 PHE B 268 ALA B 270 -1 O TYR B 269 N PHE B 252 CISPEP 1 ARG A 273 PRO A 274 0 -2.66 CISPEP 2 THR A 297 PRO A 298 0 4.49 CISPEP 3 ARG B 273 PRO B 274 0 0.80 CISPEP 4 THR B 297 PRO B 298 0 5.02 CRYST1 146.362 146.362 132.407 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007552 0.00000