HEADER STRUCTURAL PROTEIN 17-JUN-21 7F3Z TITLE DOUBLE MUTANT PLASMODIUM FALCIPARUM DIHYDROFOLATE REDUCTASE- TITLE 2 THYMIDYLATE SYNTHASE (PFDHFR-TS-K1, C59R+S108N) COMPLEXED WITH TITLE 3 TRIMETHOPRIM (TOP), NADPH AND DUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 GENE: DHFR-TS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PFDHFR, TRIMETHOPRIM, DIHYDROFOLATE REDUCTASE, PLASMODIUM FALCIPARUM, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.VANICHTANANKUL,D.TANRAMLUK,P.CHITNUMSUB,J.YUVANIYAMA,Y.YUTHAVONG REVDAT 3 29-NOV-23 7F3Z 1 REMARK REVDAT 2 16-MAR-22 7F3Z 1 JRNL REVDAT 1 22-SEP-21 7F3Z 0 JRNL AUTH D.TANRAMLUK,D.PAKOTIPRAPHA,S.PHOOCHAIJAROEN,P.CHANTRAVISUT, JRNL AUTH 2 S.THAMPRADID,J.VANICHTANANKUL,L.NARUPIYAKUL,R.AKAVIPAT, JRNL AUTH 3 J.YUVANIYAMA JRNL TITL MANORAA: A MACHINE LEARNING PLATFORM TO GUIDE PROTEIN-LIGAND JRNL TITL 2 DESIGN BY ANCHORS AND INFLUENTIAL DISTANCES. JRNL REF STRUCTURE V. 30 181 2022 JRNL REFN ISSN 0969-2126 JRNL PMID 34614393 JRNL DOI 10.1016/J.STR.2021.09.004 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 43660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.989 REMARK 3 FREE R VALUE TEST SET COUNT : 2178 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9110 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 190 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32200 REMARK 3 B22 (A**2) : -0.72400 REMARK 3 B33 (A**2) : 0.40200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.869 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.323 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9520 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8932 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12872 ; 1.602 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20560 ; 1.166 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1090 ; 8.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 520 ;38.228 ;23.808 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1712 ;19.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.773 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1216 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10672 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2294 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1896 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 89 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4366 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 276 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4378 ; 3.772 ; 5.916 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4377 ; 3.768 ; 5.915 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5462 ; 5.714 ; 8.867 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5463 ; 5.713 ; 8.868 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 5142 ; 3.869 ; 6.246 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 5143 ; 3.869 ; 6.246 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 7410 ; 5.915 ; 9.218 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7411 ; 5.915 ; 9.218 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7F3Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300020731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU R-AXIS IV REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 51.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.170 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QGT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28.5% PEG4000, 0.8 M CH3COONH4 0.08 M REMARK 280 CH3COONA, MICROBATCH, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.16600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.05950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.05950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.16600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 87 REMARK 465 ASN A 88 REMARK 465 VAL A 89 REMARK 465 ASN A 90 REMARK 465 ASP A 91 REMARK 465 MET A 92 REMARK 465 PRO A 93 REMARK 465 ASN A 94 REMARK 465 SER A 95 REMARK 465 LYS A 232 REMARK 465 MET A 233 REMARK 465 LEU A 234 REMARK 465 ASN A 235 REMARK 465 GLU A 236 REMARK 465 GLN A 237 REMARK 465 ASN A 238 REMARK 465 CYS A 239 REMARK 465 ILE A 240 REMARK 465 LYS A 241 REMARK 465 GLY A 242 REMARK 465 GLU A 243 REMARK 465 GLU A 244 REMARK 465 LYS A 245 REMARK 465 ASN A 246 REMARK 465 ASN A 247 REMARK 465 ASP A 248 REMARK 465 MET A 249 REMARK 465 PRO A 250 REMARK 465 LEU A 251 REMARK 465 LYS A 252 REMARK 465 ASN A 253 REMARK 465 ASP A 254 REMARK 465 ASP A 255 REMARK 465 LYS A 256 REMARK 465 ASP A 257 REMARK 465 THR A 258 REMARK 465 CYS A 259 REMARK 465 HIS A 260 REMARK 465 MET A 261 REMARK 465 LYS A 262 REMARK 465 LYS A 263 REMARK 465 LEU A 264 REMARK 465 THR A 265 REMARK 465 GLU A 266 REMARK 465 PHE A 267 REMARK 465 TYR A 268 REMARK 465 LYS A 269 REMARK 465 ASN A 270 REMARK 465 VAL A 271 REMARK 465 ASP A 272 REMARK 465 LYS A 273 REMARK 465 TYR A 274 REMARK 465 LYS A 275 REMARK 465 ILE A 276 REMARK 465 ASN A 277 REMARK 465 TYR A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 ASP A 281 REMARK 465 ASP A 282 REMARK 465 VAL B 86 REMARK 465 ASP B 87 REMARK 465 ASN B 88 REMARK 465 VAL B 89 REMARK 465 ASN B 90 REMARK 465 ASP B 91 REMARK 465 MET B 92 REMARK 465 PRO B 93 REMARK 465 ASN B 94 REMARK 465 LYS B 232 REMARK 465 MET B 233 REMARK 465 LEU B 234 REMARK 465 ASN B 235 REMARK 465 GLU B 236 REMARK 465 GLN B 237 REMARK 465 ASN B 238 REMARK 465 CYS B 239 REMARK 465 ILE B 240 REMARK 465 LYS B 241 REMARK 465 GLY B 242 REMARK 465 GLU B 243 REMARK 465 GLU B 244 REMARK 465 LYS B 245 REMARK 465 ASN B 246 REMARK 465 ASN B 247 REMARK 465 ASP B 248 REMARK 465 MET B 249 REMARK 465 PRO B 250 REMARK 465 LEU B 251 REMARK 465 LYS B 252 REMARK 465 ASN B 253 REMARK 465 ASP B 254 REMARK 465 ASP B 255 REMARK 465 LYS B 256 REMARK 465 ASP B 257 REMARK 465 THR B 258 REMARK 465 CYS B 259 REMARK 465 HIS B 260 REMARK 465 MET B 261 REMARK 465 LYS B 262 REMARK 465 LYS B 263 REMARK 465 LEU B 264 REMARK 465 THR B 265 REMARK 465 GLU B 266 REMARK 465 PHE B 267 REMARK 465 TYR B 268 REMARK 465 LYS B 269 REMARK 465 ASN B 270 REMARK 465 VAL B 271 REMARK 465 ASP B 272 REMARK 465 LYS B 273 REMARK 465 TYR B 274 REMARK 465 LYS B 275 REMARK 465 ILE B 276 REMARK 465 ASN B 277 REMARK 465 TYR B 278 REMARK 465 GLU B 279 REMARK 465 ASN B 280 REMARK 465 ASP B 281 REMARK 465 ASP B 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 86 CG1 CG2 REMARK 470 SER B 95 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 21 26.38 -71.28 REMARK 500 GLU A 25 -72.29 -47.81 REMARK 500 ARG A 38 -5.44 -151.80 REMARK 500 LYS A 49 -84.99 77.42 REMARK 500 LYS A 79 -72.68 -51.42 REMARK 500 ASN A 82 101.67 62.61 REMARK 500 LYS A 83 178.15 172.81 REMARK 500 GLU A 84 117.63 -178.53 REMARK 500 SER A 128 144.08 -172.40 REMARK 500 LYS A 177 64.88 32.38 REMARK 500 HIS A 308 103.40 75.18 REMARK 500 ASN A 310 -6.78 -52.91 REMARK 500 PHE A 312 55.75 -93.75 REMARK 500 LYS A 321 69.26 -111.93 REMARK 500 ASP A 344 49.05 -77.03 REMARK 500 ARG A 345 140.50 52.34 REMARK 500 THR A 346 -1.10 80.17 REMARK 500 TYR A 430 -53.17 -28.88 REMARK 500 HIS A 436 13.96 -146.74 REMARK 500 THR A 442 -70.71 -97.36 REMARK 500 MET A 444 -49.19 -29.68 REMARK 500 TYR A 448 59.09 -91.64 REMARK 500 ALA A 541 -96.52 -113.36 REMARK 500 MET A 606 34.38 -84.05 REMARK 500 MET B 2 -127.20 35.82 REMARK 500 GLU B 3 124.46 178.77 REMARK 500 ASN B 29 69.47 -69.43 REMARK 500 ARG B 38 -46.82 -132.62 REMARK 500 LYS B 49 -71.19 54.07 REMARK 500 TYR B 75 -76.97 -60.03 REMARK 500 ASN B 82 38.43 71.52 REMARK 500 LYS B 96 -109.28 -96.68 REMARK 500 PRO B 113 164.99 -39.46 REMARK 500 GLU B 134 -63.79 -17.63 REMARK 500 LYS B 176 31.62 -92.56 REMARK 500 LYS B 177 45.34 38.95 REMARK 500 ASN B 188 53.05 -92.50 REMARK 500 GLU B 199 96.42 -61.17 REMARK 500 HIS B 308 85.50 65.25 REMARK 500 PHE B 312 44.96 -84.42 REMARK 500 LYS B 321 71.36 -117.82 REMARK 500 ASP B 344 -175.14 -178.22 REMARK 500 ARG B 345 -34.61 86.99 REMARK 500 THR B 346 -18.35 -142.97 REMARK 500 LEU B 369 139.93 -39.38 REMARK 500 HIS B 436 38.21 -154.09 REMARK 500 THR B 442 -68.80 -122.14 REMARK 500 ASP B 466 53.27 -147.48 REMARK 500 ALA B 541 -100.55 -103.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F3Z A 1 608 UNP C3S7P8 C3S7P8_PLAFA 1 608 DBREF 7F3Z B 1 608 UNP C3S7P8 C3S7P8_PLAFA 1 608 SEQRES 1 A 608 MET MET GLU GLN VAL CYS ASP VAL PHE ASP ILE TYR ALA SEQRES 2 A 608 ILE CYS ALA CYS CYS LYS VAL GLU SER LYS ASN GLU GLY SEQRES 3 A 608 LYS LYS ASN GLU VAL PHE ASN ASN TYR THR PHE ARG GLY SEQRES 4 A 608 LEU GLY ASN LYS GLY VAL LEU PRO TRP LYS CYS ASN SER SEQRES 5 A 608 LEU ASP MET LYS TYR PHE ARG ALA VAL THR THR TYR VAL SEQRES 6 A 608 ASN GLU SER LYS TYR GLU LYS LEU LYS TYR LYS ARG CYS SEQRES 7 A 608 LYS TYR LEU ASN LYS GLU THR VAL ASP ASN VAL ASN ASP SEQRES 8 A 608 MET PRO ASN SER LYS LYS LEU GLN ASN VAL VAL VAL MET SEQRES 9 A 608 GLY ARG THR ASN TRP GLU SER ILE PRO LYS LYS PHE LYS SEQRES 10 A 608 PRO LEU SER ASN ARG ILE ASN VAL ILE LEU SER ARG THR SEQRES 11 A 608 LEU LYS LYS GLU ASP PHE ASP GLU ASP VAL TYR ILE ILE SEQRES 12 A 608 ASN LYS VAL GLU ASP LEU ILE VAL LEU LEU GLY LYS LEU SEQRES 13 A 608 ASN TYR TYR LYS CYS PHE ILE ILE GLY GLY SER VAL VAL SEQRES 14 A 608 TYR GLN GLU PHE LEU GLU LYS LYS LEU ILE LYS LYS ILE SEQRES 15 A 608 TYR PHE THR ARG ILE ASN SER THR TYR GLU CYS ASP VAL SEQRES 16 A 608 PHE PHE PRO GLU ILE ASN GLU ASN GLU TYR GLN ILE ILE SEQRES 17 A 608 SER VAL SER ASP VAL TYR THR SER ASN ASN THR THR LEU SEQRES 18 A 608 ASP PHE ILE ILE TYR LYS LYS THR ASN ASN LYS MET LEU SEQRES 19 A 608 ASN GLU GLN ASN CYS ILE LYS GLY GLU GLU LYS ASN ASN SEQRES 20 A 608 ASP MET PRO LEU LYS ASN ASP ASP LYS ASP THR CYS HIS SEQRES 21 A 608 MET LYS LYS LEU THR GLU PHE TYR LYS ASN VAL ASP LYS SEQRES 22 A 608 TYR LYS ILE ASN TYR GLU ASN ASP ASP ASP ASP GLU GLU SEQRES 23 A 608 GLU ASP ASP PHE VAL TYR PHE ASN PHE ASN LYS GLU LYS SEQRES 24 A 608 GLU GLU LYS ASN LYS ASN SER ILE HIS PRO ASN ASP PHE SEQRES 25 A 608 GLN ILE TYR ASN SER LEU LYS TYR LYS TYR HIS PRO GLU SEQRES 26 A 608 TYR GLN TYR LEU ASN ILE ILE TYR ASP ILE MET MET ASN SEQRES 27 A 608 GLY ASN LYS GLN SER ASP ARG THR GLY VAL GLY VAL LEU SEQRES 28 A 608 SER LYS PHE GLY TYR ILE MET LYS PHE ASP LEU SER GLN SEQRES 29 A 608 TYR PHE PRO LEU LEU THR THR LYS LYS LEU PHE LEU ARG SEQRES 30 A 608 GLY ILE ILE GLU GLU LEU LEU TRP PHE ILE ARG GLY GLU SEQRES 31 A 608 THR ASN GLY ASN THR LEU LEU ASN LYS ASN VAL ARG ILE SEQRES 32 A 608 TRP GLU ALA ASN GLY THR ARG GLU PHE LEU ASP ASN ARG SEQRES 33 A 608 LYS LEU PHE HIS ARG GLU VAL ASN ASP LEU GLY PRO ILE SEQRES 34 A 608 TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR THR SEQRES 35 A 608 ASN MET TYR ASP ASN TYR GLU ASN LYS GLY VAL ASP GLN SEQRES 36 A 608 LEU LYS ASN ILE ILE ASN LEU ILE LYS ASN ASP PRO THR SEQRES 37 A 608 SER ARG ARG ILE LEU LEU CYS ALA TRP ASN VAL LYS ASP SEQRES 38 A 608 LEU ASP GLN MET ALA LEU PRO PRO CYS HIS ILE LEU CYS SEQRES 39 A 608 GLN PHE TYR VAL PHE ASP GLY LYS LEU SER CYS ILE MET SEQRES 40 A 608 TYR GLN ARG SER CYS ASP LEU GLY LEU GLY VAL PRO PHE SEQRES 41 A 608 ASN ILE ALA SER TYR SER ILE PHE THR HIS MET ILE ALA SEQRES 42 A 608 GLN VAL CYS ASN LEU GLN PRO ALA GLN PHE ILE HIS VAL SEQRES 43 A 608 LEU GLY ASN ALA HIS VAL TYR ASN ASN HIS ILE ASP SER SEQRES 44 A 608 LEU LYS ILE GLN LEU ASN ARG ILE PRO TYR PRO PHE PRO SEQRES 45 A 608 THR LEU LYS LEU ASN PRO ASP ILE LYS ASN ILE GLU ASP SEQRES 46 A 608 PHE THR ILE SER ASP PHE THR ILE GLN ASN TYR VAL HIS SEQRES 47 A 608 HIS GLU LYS ILE SER MET ASP MET ALA ALA SEQRES 1 B 608 MET MET GLU GLN VAL CYS ASP VAL PHE ASP ILE TYR ALA SEQRES 2 B 608 ILE CYS ALA CYS CYS LYS VAL GLU SER LYS ASN GLU GLY SEQRES 3 B 608 LYS LYS ASN GLU VAL PHE ASN ASN TYR THR PHE ARG GLY SEQRES 4 B 608 LEU GLY ASN LYS GLY VAL LEU PRO TRP LYS CYS ASN SER SEQRES 5 B 608 LEU ASP MET LYS TYR PHE ARG ALA VAL THR THR TYR VAL SEQRES 6 B 608 ASN GLU SER LYS TYR GLU LYS LEU LYS TYR LYS ARG CYS SEQRES 7 B 608 LYS TYR LEU ASN LYS GLU THR VAL ASP ASN VAL ASN ASP SEQRES 8 B 608 MET PRO ASN SER LYS LYS LEU GLN ASN VAL VAL VAL MET SEQRES 9 B 608 GLY ARG THR ASN TRP GLU SER ILE PRO LYS LYS PHE LYS SEQRES 10 B 608 PRO LEU SER ASN ARG ILE ASN VAL ILE LEU SER ARG THR SEQRES 11 B 608 LEU LYS LYS GLU ASP PHE ASP GLU ASP VAL TYR ILE ILE SEQRES 12 B 608 ASN LYS VAL GLU ASP LEU ILE VAL LEU LEU GLY LYS LEU SEQRES 13 B 608 ASN TYR TYR LYS CYS PHE ILE ILE GLY GLY SER VAL VAL SEQRES 14 B 608 TYR GLN GLU PHE LEU GLU LYS LYS LEU ILE LYS LYS ILE SEQRES 15 B 608 TYR PHE THR ARG ILE ASN SER THR TYR GLU CYS ASP VAL SEQRES 16 B 608 PHE PHE PRO GLU ILE ASN GLU ASN GLU TYR GLN ILE ILE SEQRES 17 B 608 SER VAL SER ASP VAL TYR THR SER ASN ASN THR THR LEU SEQRES 18 B 608 ASP PHE ILE ILE TYR LYS LYS THR ASN ASN LYS MET LEU SEQRES 19 B 608 ASN GLU GLN ASN CYS ILE LYS GLY GLU GLU LYS ASN ASN SEQRES 20 B 608 ASP MET PRO LEU LYS ASN ASP ASP LYS ASP THR CYS HIS SEQRES 21 B 608 MET LYS LYS LEU THR GLU PHE TYR LYS ASN VAL ASP LYS SEQRES 22 B 608 TYR LYS ILE ASN TYR GLU ASN ASP ASP ASP ASP GLU GLU SEQRES 23 B 608 GLU ASP ASP PHE VAL TYR PHE ASN PHE ASN LYS GLU LYS SEQRES 24 B 608 GLU GLU LYS ASN LYS ASN SER ILE HIS PRO ASN ASP PHE SEQRES 25 B 608 GLN ILE TYR ASN SER LEU LYS TYR LYS TYR HIS PRO GLU SEQRES 26 B 608 TYR GLN TYR LEU ASN ILE ILE TYR ASP ILE MET MET ASN SEQRES 27 B 608 GLY ASN LYS GLN SER ASP ARG THR GLY VAL GLY VAL LEU SEQRES 28 B 608 SER LYS PHE GLY TYR ILE MET LYS PHE ASP LEU SER GLN SEQRES 29 B 608 TYR PHE PRO LEU LEU THR THR LYS LYS LEU PHE LEU ARG SEQRES 30 B 608 GLY ILE ILE GLU GLU LEU LEU TRP PHE ILE ARG GLY GLU SEQRES 31 B 608 THR ASN GLY ASN THR LEU LEU ASN LYS ASN VAL ARG ILE SEQRES 32 B 608 TRP GLU ALA ASN GLY THR ARG GLU PHE LEU ASP ASN ARG SEQRES 33 B 608 LYS LEU PHE HIS ARG GLU VAL ASN ASP LEU GLY PRO ILE SEQRES 34 B 608 TYR GLY PHE GLN TRP ARG HIS PHE GLY ALA GLU TYR THR SEQRES 35 B 608 ASN MET TYR ASP ASN TYR GLU ASN LYS GLY VAL ASP GLN SEQRES 36 B 608 LEU LYS ASN ILE ILE ASN LEU ILE LYS ASN ASP PRO THR SEQRES 37 B 608 SER ARG ARG ILE LEU LEU CYS ALA TRP ASN VAL LYS ASP SEQRES 38 B 608 LEU ASP GLN MET ALA LEU PRO PRO CYS HIS ILE LEU CYS SEQRES 39 B 608 GLN PHE TYR VAL PHE ASP GLY LYS LEU SER CYS ILE MET SEQRES 40 B 608 TYR GLN ARG SER CYS ASP LEU GLY LEU GLY VAL PRO PHE SEQRES 41 B 608 ASN ILE ALA SER TYR SER ILE PHE THR HIS MET ILE ALA SEQRES 42 B 608 GLN VAL CYS ASN LEU GLN PRO ALA GLN PHE ILE HIS VAL SEQRES 43 B 608 LEU GLY ASN ALA HIS VAL TYR ASN ASN HIS ILE ASP SER SEQRES 44 B 608 LEU LYS ILE GLN LEU ASN ARG ILE PRO TYR PRO PHE PRO SEQRES 45 B 608 THR LEU LYS LEU ASN PRO ASP ILE LYS ASN ILE GLU ASP SEQRES 46 B 608 PHE THR ILE SER ASP PHE THR ILE GLN ASN TYR VAL HIS SEQRES 47 B 608 HIS GLU LYS ILE SER MET ASP MET ALA ALA HET NDP A 701 48 HET UMP A 702 20 HET TOP A 703 21 HET GOL A 704 6 HET NDP B 701 48 HET UMP B 702 20 HET TOP B 703 21 HET GOL B 704 6 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM TOP TRIMETHOPRIM HETNAM GOL GLYCEROL HETSYN UMP DUMP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 UMP 2(C9 H13 N2 O8 P) FORMUL 5 TOP 2(C14 H18 N4 O3) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *194(H2 O) HELIX 1 AA1 GLN A 4 PHE A 9 1 6 HELIX 2 AA2 ASN A 33 TYR A 35 5 3 HELIX 3 AA3 ASN A 51 TYR A 64 1 14 HELIX 4 AA4 GLU A 67 LEU A 81 1 15 HELIX 5 AA5 ARG A 106 ILE A 112 1 7 HELIX 6 AA6 PRO A 113 LYS A 117 5 5 HELIX 7 AA7 LYS A 132 PHE A 136 5 5 HELIX 8 AA8 LYS A 145 GLY A 154 1 10 HELIX 9 AA9 GLY A 166 LYS A 176 1 11 HELIX 10 AB1 GLU A 286 ASN A 294 1 9 HELIX 11 AB2 ASN A 303 HIS A 308 1 6 HELIX 12 AB3 PRO A 309 ASP A 311 5 3 HELIX 13 AB4 PHE A 312 LEU A 318 1 7 HELIX 14 AB5 PRO A 324 GLY A 339 1 16 HELIX 15 AB6 LEU A 376 ARG A 388 1 13 HELIX 16 AB7 ASN A 392 ASN A 398 1 7 HELIX 17 AB8 GLU A 405 GLY A 408 5 4 HELIX 18 AB9 THR A 409 ARG A 416 1 8 HELIX 19 AC1 ILE A 429 PHE A 437 1 9 HELIX 20 AC2 ASP A 454 ASP A 466 1 13 HELIX 21 AC3 ASP A 481 MET A 485 5 5 HELIX 22 AC4 GLY A 517 CYS A 536 1 20 HELIX 23 AC5 HIS A 556 ASN A 565 1 10 HELIX 24 AC6 ASN A 582 PHE A 586 5 5 HELIX 25 AC7 THR A 587 SER A 589 5 3 HELIX 26 AC8 GLN B 4 PHE B 9 1 6 HELIX 27 AC9 ASN B 33 PHE B 37 5 5 HELIX 28 AD1 ASN B 51 THR B 63 1 13 HELIX 29 AD2 ASN B 66 LYS B 79 1 14 HELIX 30 AD3 ARG B 106 ILE B 112 1 7 HELIX 31 AD4 LYS B 132 PHE B 136 5 5 HELIX 32 AD5 VAL B 146 LEU B 156 1 11 HELIX 33 AD6 GLY B 166 LYS B 176 1 11 HELIX 34 AD7 ASP B 284 ASN B 294 1 11 HELIX 35 AD8 ASN B 303 HIS B 308 1 6 HELIX 36 AD9 PRO B 309 ASP B 311 5 3 HELIX 37 AE1 PHE B 312 LEU B 318 1 7 HELIX 38 AE2 GLU B 325 GLY B 339 1 15 HELIX 39 AE3 LEU B 376 GLY B 389 1 14 HELIX 40 AE4 ASN B 392 ASN B 398 1 7 HELIX 41 AE5 TRP B 404 GLY B 408 5 5 HELIX 42 AE6 THR B 409 ARG B 416 1 8 HELIX 43 AE7 ILE B 429 PHE B 437 1 9 HELIX 44 AE8 ASP B 454 ASP B 466 1 13 HELIX 45 AE9 GLY B 517 CYS B 536 1 20 HELIX 46 AF1 HIS B 556 ASN B 565 1 10 HELIX 47 AF2 ASN B 582 PHE B 586 5 5 HELIX 48 AF3 THR B 587 SER B 589 5 3 SHEET 1 AA1 7 TYR A 141 ILE A 143 0 SHEET 2 AA1 7 ARG A 122 LEU A 127 1 N ILE A 126 O TYR A 141 SHEET 3 AA1 7 ASN A 100 GLY A 105 1 N VAL A 102 O VAL A 125 SHEET 4 AA1 7 CYS A 161 ILE A 163 1 O PHE A 162 N VAL A 101 SHEET 5 AA1 7 ILE A 11 VAL A 20 1 N TYR A 12 O CYS A 161 SHEET 6 AA1 7 PHE A 37 GLY A 41 -1 O GLY A 39 N CYS A 18 SHEET 7 AA1 7 VAL A 195 PHE A 196 -1 O VAL A 195 N LEU A 40 SHEET 1 AA2 9 TYR A 141 ILE A 143 0 SHEET 2 AA2 9 ARG A 122 LEU A 127 1 N ILE A 126 O TYR A 141 SHEET 3 AA2 9 ASN A 100 GLY A 105 1 N VAL A 102 O VAL A 125 SHEET 4 AA2 9 CYS A 161 ILE A 163 1 O PHE A 162 N VAL A 101 SHEET 5 AA2 9 ILE A 11 VAL A 20 1 N TYR A 12 O CYS A 161 SHEET 6 AA2 9 LYS A 181 TYR A 191 1 O TYR A 183 N ALA A 13 SHEET 7 AA2 9 THR A 219 LYS A 228 -1 O ILE A 224 N PHE A 184 SHEET 8 AA2 9 TYR A 205 SER A 216 -1 N GLN A 206 O LYS A 227 SHEET 9 AA2 9 TYR A 320 LYS A 321 1 O TYR A 320 N VAL A 210 SHEET 1 AA3 6 ASN A 340 GLN A 342 0 SHEET 2 AA3 6 VAL A 350 ASP A 361 -1 O SER A 352 N ASN A 340 SHEET 3 AA3 6 GLN A 539 TYR A 553 -1 O LEU A 547 N TYR A 356 SHEET 4 AA3 6 LYS A 502 ASP A 513 1 N CYS A 505 O ILE A 544 SHEET 5 AA3 6 HIS A 491 PHE A 499 -1 N TYR A 497 O SER A 504 SHEET 6 AA3 6 LEU A 473 CYS A 475 -1 N LEU A 474 O CYS A 494 SHEET 1 AA4 2 THR A 573 LEU A 576 0 SHEET 2 AA4 2 PHE A 591 GLN A 594 -1 O THR A 592 N LYS A 575 SHEET 1 AA5 9 TYR B 141 ILE B 143 0 SHEET 2 AA5 9 ILE B 123 LEU B 127 1 N ILE B 126 O TYR B 141 SHEET 3 AA5 9 GLN B 99 GLY B 105 1 N ASN B 100 O ILE B 123 SHEET 4 AA5 9 TYR B 158 ILE B 163 1 O PHE B 162 N VAL B 103 SHEET 5 AA5 9 ILE B 11 VAL B 20 1 N TYR B 12 O CYS B 161 SHEET 6 AA5 9 LYS B 181 TYR B 191 1 O TYR B 183 N ALA B 13 SHEET 7 AA5 9 THR B 219 LYS B 228 -1 O ILE B 224 N PHE B 184 SHEET 8 AA5 9 TYR B 205 SER B 216 -1 N ILE B 208 O ILE B 225 SHEET 9 AA5 9 TYR B 320 LYS B 321 1 O TYR B 320 N VAL B 210 SHEET 1 AA6 2 GLY B 39 GLY B 41 0 SHEET 2 AA6 2 VAL B 195 PHE B 196 -1 O VAL B 195 N LEU B 40 SHEET 1 AA7 6 ASN B 340 GLN B 342 0 SHEET 2 AA7 6 VAL B 350 ASP B 361 -1 O SER B 352 N ASN B 340 SHEET 3 AA7 6 GLN B 539 TYR B 553 -1 O HIS B 545 N MET B 358 SHEET 4 AA7 6 LYS B 502 ASP B 513 1 N CYS B 505 O ILE B 544 SHEET 5 AA7 6 HIS B 491 PHE B 499 -1 N TYR B 497 O SER B 504 SHEET 6 AA7 6 LEU B 473 CYS B 475 -1 N LEU B 474 O CYS B 494 SHEET 1 AA8 2 THR B 573 LEU B 576 0 SHEET 2 AA8 2 PHE B 591 GLN B 594 -1 O THR B 592 N LYS B 575 CISPEP 1 LYS A 117 PRO A 118 0 -15.98 CISPEP 2 GLY A 165 GLY A 166 0 11.84 CISPEP 3 LYS B 117 PRO B 118 0 -8.44 CISPEP 4 GLY B 165 GLY B 166 0 10.84 CRYST1 56.332 153.739 164.119 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006093 0.00000