HEADER NUCLEAR PROTEIN 18-JUN-21 7F4E TITLE CRYSTAL STRUCTURE OF HST2 IN COMPLEX WITH H3K9BZ PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE HST2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HOMOLOGOUS TO SIR2 PROTEIN 2,REGULATORY PROTEIN SIR2 HOMOLOG COMPND 5 2; COMPND 6 EC: 2.3.1.286; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: HST2, YPL015C, LPA2C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 13 S288C); SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292 KEYWDS HISTONE MODIFICATION, HISTONE BENZOYLATION, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, NAD-DEPENDENT HISTONE DEACETYLASE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.WANG,F.YAN,Y.CHEN REVDAT 3 29-NOV-23 7F4E 1 LINK REVDAT 2 30-MAR-22 7F4E 1 JRNL REVDAT 1 16-MAR-22 7F4E 0 JRNL AUTH D.WANG,F.YAN,P.WU,K.GE,M.LI,T.LI,Y.GAO,C.PENG,Y.CHEN JRNL TITL GLOBAL PROFILING OF REGULATORY ELEMENTS IN THE HISTONE JRNL TITL 2 BENZOYLATION PATHWAY. JRNL REF NAT COMMUN V. 13 1369 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35296687 JRNL DOI 10.1038/S41467-022-29057-2 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 25193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6100 - 3.7000 0.99 2995 149 0.1649 0.1762 REMARK 3 2 3.7000 - 2.9400 0.99 2864 147 0.1762 0.1853 REMARK 3 3 2.9400 - 2.5700 1.00 2865 130 0.1854 0.2470 REMARK 3 4 2.5700 - 2.3300 1.00 2827 139 0.1903 0.2394 REMARK 3 5 2.3300 - 2.1700 1.00 2823 143 0.1875 0.2214 REMARK 3 6 2.1700 - 2.0400 1.00 2797 149 0.1864 0.2315 REMARK 3 7 2.0400 - 1.9400 0.97 2721 138 0.2101 0.2839 REMARK 3 8 1.9400 - 1.8500 0.85 2347 126 0.2353 0.2983 REMARK 3 9 1.8500 - 1.7800 0.62 1739 94 0.2416 0.2799 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9523 1.7726 -38.4060 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.2293 REMARK 3 T33: 0.1128 T12: 0.0238 REMARK 3 T13: -0.0307 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.2731 L22: 1.9760 REMARK 3 L33: 2.8668 L12: 0.7149 REMARK 3 L13: 0.4298 L23: 0.4861 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: 0.4635 S13: 0.0484 REMARK 3 S21: -0.4287 S22: -0.0348 S23: 0.1032 REMARK 3 S31: 0.0488 S32: -0.1167 S33: -0.0621 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6664 -6.2014 -16.1750 REMARK 3 T TENSOR REMARK 3 T11: 0.4320 T22: 0.6455 REMARK 3 T33: 0.7757 T12: 0.2235 REMARK 3 T13: 0.0847 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 1.8705 L22: 4.1144 REMARK 3 L33: 5.5090 L12: -1.5678 REMARK 3 L13: -3.1350 L23: 1.5013 REMARK 3 S TENSOR REMARK 3 S11: -0.5555 S12: -0.3888 S13: -0.9676 REMARK 3 S21: 0.7253 S22: -0.0941 S23: 0.1372 REMARK 3 S31: 1.3112 S32: 0.9174 S33: 0.2869 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8234 0.2897 -6.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.2806 T22: 0.2487 REMARK 3 T33: 0.1751 T12: 0.0125 REMARK 3 T13: 0.0341 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 3.2180 L22: 2.2867 REMARK 3 L33: 7.5817 L12: -2.5956 REMARK 3 L13: -1.8175 L23: 0.4887 REMARK 3 S TENSOR REMARK 3 S11: -0.3165 S12: -0.7194 S13: -0.7066 REMARK 3 S21: -0.0133 S22: 0.2123 S23: 0.1769 REMARK 3 S31: 0.7056 S32: 0.1861 S33: -0.0411 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4942 4.7315 -20.4245 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.3177 REMARK 3 T33: 0.2263 T12: 0.0131 REMARK 3 T13: 0.0933 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.1646 L22: 0.6072 REMARK 3 L33: 3.9410 L12: -0.3569 REMARK 3 L13: 2.0666 L23: -0.8847 REMARK 3 S TENSOR REMARK 3 S11: -0.4220 S12: 0.2627 S13: 0.2562 REMARK 3 S21: 0.2937 S22: -0.1649 S23: 0.1401 REMARK 3 S31: 0.1525 S32: 0.9283 S33: -0.4926 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0422 11.4478 -19.0948 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.1302 REMARK 3 T33: 0.1473 T12: -0.0260 REMARK 3 T13: 0.0163 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.9724 L22: 1.9183 REMARK 3 L33: 1.7372 L12: 0.2419 REMARK 3 L13: 0.3720 L23: 0.4676 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: -0.0244 S13: 0.0694 REMARK 3 S21: 0.2154 S22: 0.1307 S23: -0.1587 REMARK 3 S31: -0.1937 S32: 0.2258 S33: 0.0543 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2718 2.1966 -31.8908 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.1074 REMARK 3 T33: 0.1361 T12: 0.0034 REMARK 3 T13: -0.0097 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 2.1465 L22: 2.5661 REMARK 3 L33: 2.1757 L12: 0.4168 REMARK 3 L13: -0.0990 L23: 0.2332 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.1734 S13: -0.0119 REMARK 3 S21: -0.0689 S22: -0.0038 S23: 0.2187 REMARK 3 S31: 0.0710 S32: -0.1466 S33: -0.0212 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7713 2.0655 -11.1839 REMARK 3 T TENSOR REMARK 3 T11: 0.7182 T22: 0.4180 REMARK 3 T33: 0.2789 T12: -0.1296 REMARK 3 T13: 0.0595 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 5.0669 L22: 0.2497 REMARK 3 L33: 2.5350 L12: -0.9434 REMARK 3 L13: 2.7557 L23: -0.2587 REMARK 3 S TENSOR REMARK 3 S11: 0.2972 S12: -0.8923 S13: -0.3089 REMARK 3 S21: 0.5138 S22: -0.1610 S23: 0.3617 REMARK 3 S31: -0.4810 S32: -0.8942 S33: -0.2125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F4E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97855 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26704 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q1A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 1500, 0.1M MMT/SODIUM REMARK 280 HYDROXIDE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.07500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.25550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.20100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.25550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.20100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 206 REMARK 465 ILE A 207 REMARK 465 THR A 208 REMARK 465 THR A 209 REMARK 465 SER A 210 REMARK 465 GLY A 211 REMARK 465 LYS A 212 REMARK 465 HIS A 213 REMARK 465 GLN A 294 REMARK 465 GLN C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 939 O HOH A 1002 1.74 REMARK 500 O HOH A 969 O HOH A 980 1.83 REMARK 500 OH TYR A 87 O HOH A 801 1.91 REMARK 500 O HOH A 986 O HOH A 1020 1.92 REMARK 500 O HOH A 813 O HOH A 1010 1.93 REMARK 500 NE2 HIS A 162 O HOH A 802 2.06 REMARK 500 O HOH A 1004 O HOH A 1013 2.09 REMARK 500 O HOH A 832 O HOH A 916 2.15 REMARK 500 O HOH A 849 O HOH A 975 2.16 REMARK 500 NH1 ARG A 204 O HOH A 803 2.17 REMARK 500 O HOH A 965 O HOH A 979 2.18 REMARK 500 O LYS A 20 O HOH A 804 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 8 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 57 -72.32 -65.41 REMARK 500 ASP A 75 96.41 -168.95 REMARK 500 ARG A 111 148.92 -170.12 REMARK 500 ASP A 166 74.99 53.09 REMARK 500 ASN A 258 58.36 -148.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 143 SG REMARK 620 2 CYS A 146 SG 135.6 REMARK 620 3 CYS A 170 SG 107.7 110.3 REMARK 620 4 CYS A 173 SG 94.4 90.9 113.5 REMARK 620 N 1 2 3 DBREF 7F4E A 8 294 UNP P53686 HST2_YEAST 8 294 DBREF 7F4E C 5 14 UNP P61830 H3_YEAST 6 15 SEQRES 1 A 287 THR GLU MET SER VAL ARG LYS ILE ALA ALA HIS MET LYS SEQRES 2 A 287 SER ASN PRO ASN ALA LYS VAL ILE PHE MET VAL GLY ALA SEQRES 3 A 287 GLY ILE SER THR SER CYS GLY ILE PRO ASP PHE ARG SER SEQRES 4 A 287 PRO GLY THR GLY LEU TYR HIS ASN LEU ALA ARG LEU LYS SEQRES 5 A 287 LEU PRO TYR PRO GLU ALA VAL PHE ASP VAL ASP PHE PHE SEQRES 6 A 287 GLN SER ASP PRO LEU PRO PHE TYR THR LEU ALA LYS GLU SEQRES 7 A 287 LEU TYR PRO GLY ASN PHE ARG PRO SER LYS PHE HIS TYR SEQRES 8 A 287 LEU LEU LYS LEU PHE GLN ASP LYS ASP VAL LEU LYS ARG SEQRES 9 A 287 VAL TYR THR GLN ASN ILE ASP THR LEU GLU ARG GLN ALA SEQRES 10 A 287 GLY VAL LYS ASP ASP LEU ILE ILE GLU ALA HIS GLY SER SEQRES 11 A 287 PHE ALA HIS CYS HIS CYS ILE GLY CYS GLY LYS VAL TYR SEQRES 12 A 287 PRO PRO GLN VAL PHE LYS SER LYS LEU ALA GLU HIS PRO SEQRES 13 A 287 ILE LYS ASP PHE VAL LYS CYS ASP VAL CYS GLY GLU LEU SEQRES 14 A 287 VAL LYS PRO ALA ILE VAL PHE PHE GLY GLU ASP LEU PRO SEQRES 15 A 287 ASP SER PHE SER GLU THR TRP LEU ASN ASP SER GLU TRP SEQRES 16 A 287 LEU ARG GLU LYS ILE THR THR SER GLY LYS HIS PRO GLN SEQRES 17 A 287 GLN PRO LEU VAL ILE VAL VAL GLY THR SER LEU ALA VAL SEQRES 18 A 287 TYR PRO PHE ALA SER LEU PRO GLU GLU ILE PRO ARG LYS SEQRES 19 A 287 VAL LYS ARG VAL LEU CYS ASN LEU GLU THR VAL GLY ASP SEQRES 20 A 287 PHE LYS ALA ASN LYS ARG PRO THR ASP LEU ILE VAL HIS SEQRES 21 A 287 GLN TYR SER ASP GLU PHE ALA GLU GLN LEU VAL GLU GLU SEQRES 22 A 287 LEU GLY TRP GLN GLU ASP PHE GLU LYS ILE LEU THR ALA SEQRES 23 A 287 GLN SEQRES 1 C 10 GLN THR ALA ARG LBZ SER THR GLY GLY LYS MODRES 7F4E LBZ C 9 LYS MODIFIED RESIDUE HET LBZ C 9 17 HET ZN A 701 1 HETNAM LBZ (2~{S})-2-AZANYL-6-BENZAMIDO-HEXANOIC ACID HETNAM ZN ZINC ION FORMUL 2 LBZ C13 H18 N2 O3 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *234(H2 O) HELIX 1 AA1 THR A 8 ASN A 22 1 15 HELIX 2 AA2 ALA A 33 GLY A 40 5 8 HELIX 3 AA3 TYR A 52 LEU A 58 1 7 HELIX 4 AA4 GLU A 64 PHE A 67 5 4 HELIX 5 AA5 ASP A 68 ASP A 75 1 8 HELIX 6 AA6 PRO A 76 TYR A 87 1 12 HELIX 7 AA7 SER A 94 LYS A 106 1 13 HELIX 8 AA8 THR A 119 ALA A 124 1 6 HELIX 9 AA9 LYS A 127 ASP A 129 5 3 HELIX 10 AB1 PRO A 152 ALA A 160 1 9 HELIX 11 AB2 PRO A 189 ARG A 204 1 16 HELIX 12 AB3 PRO A 230 ALA A 232 5 3 HELIX 13 AB4 SER A 233 ILE A 238 1 6 HELIX 14 AB5 GLY A 253 ASN A 258 1 6 HELIX 15 AB6 TYR A 269 GLY A 282 1 14 HELIX 16 AB7 TRP A 283 THR A 292 1 10 SHEET 1 AA1 6 ILE A 131 GLU A 133 0 SHEET 2 AA1 6 LEU A 109 THR A 114 1 N VAL A 112 O ILE A 132 SHEET 3 AA1 6 VAL A 27 VAL A 31 1 N PHE A 29 O TYR A 113 SHEET 4 AA1 6 LEU A 218 VAL A 222 1 O ILE A 220 N ILE A 28 SHEET 5 AA1 6 LYS A 243 CYS A 247 1 O VAL A 245 N VAL A 221 SHEET 6 AA1 6 LEU A 264 VAL A 266 1 O VAL A 266 N LEU A 246 SHEET 1 AA2 3 VAL A 149 TYR A 150 0 SHEET 2 AA2 3 GLY A 136 CYS A 143 -1 N CYS A 141 O TYR A 150 SHEET 3 AA2 3 VAL A 177 ILE A 181 -1 O ALA A 180 N HIS A 140 LINK C ARG C 8 N LBZ C 9 1555 1555 1.33 LINK C LBZ C 9 N SER C 10 1555 1555 1.33 LINK SG CYS A 143 ZN ZN A 701 1555 1555 2.34 LINK SG CYS A 146 ZN ZN A 701 1555 1555 2.33 LINK SG CYS A 170 ZN ZN A 701 1555 1555 2.31 LINK SG CYS A 173 ZN ZN A 701 1555 1555 2.34 CISPEP 1 HIS A 162 PRO A 163 0 -4.50 CISPEP 2 TYR A 229 PRO A 230 0 1.22 CRYST1 42.150 68.402 94.511 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014619 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010581 0.00000