HEADER IMMUNE SYSTEM 21-JUN-21 7F4W TITLE COMPLEX STRUCTURE OF HLA2402 WITH RECOGNIZING SARS-COV-2 EPITOPE PEP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SARS-COV-2 T-CELL EPITOPE PEP4; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 18 2; SOURCE 19 ORGANISM_TAXID: 2697049 KEYWDS MHC, HLA, SARS-COV-2, EPITOPE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.DENG,T.JIN REVDAT 3 29-NOV-23 7F4W 1 REMARK REVDAT 2 09-MAR-22 7F4W 1 JRNL REVDAT 1 25-AUG-21 7F4W 0 JRNL AUTH H.ZHANG,S.DENG,L.REN,P.ZHENG,X.HU,T.JIN,X.TAN JRNL TITL PROFILING CD8 + T CELL EPITOPES OF COVID-19 CONVALESCENTS JRNL TITL 2 REVEALS REDUCED CELLULAR IMMUNE RESPONSES TO SARS-COV-2 JRNL TITL 3 VARIANTS. JRNL REF CELL REP V. 36 09708 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34506741 JRNL DOI 10.1016/J.CELREP.2021.109708 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 22622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8300 - 5.8000 1.00 2869 151 0.1981 0.2415 REMARK 3 2 5.8000 - 4.6000 1.00 2735 144 0.2015 0.2940 REMARK 3 3 4.6000 - 4.0200 0.99 2660 140 0.2184 0.2318 REMARK 3 4 4.0200 - 3.6500 0.99 2639 139 0.2665 0.3213 REMARK 3 5 3.6500 - 3.3900 0.99 2640 138 0.2870 0.3711 REMARK 3 6 3.3900 - 3.1900 1.00 2666 140 0.3028 0.3643 REMARK 3 7 3.1900 - 3.0300 1.00 2660 140 0.3114 0.3717 REMARK 3 8 3.0300 - 2.9000 0.99 2622 139 0.3401 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.401 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.776 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6565 REMARK 3 ANGLE : 1.111 8891 REMARK 3 CHIRALITY : 0.058 900 REMARK 3 PLANARITY : 0.010 1170 REMARK 3 DIHEDRAL : 6.901 878 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.5554 1.9951 -35.4079 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.3409 REMARK 3 T33: 0.3984 T12: 0.0866 REMARK 3 T13: 0.0302 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.4785 L22: 0.3048 REMARK 3 L33: 0.5697 L12: 0.2760 REMARK 3 L13: -0.1158 L23: -0.3054 REMARK 3 S TENSOR REMARK 3 S11: -0.0066 S12: -0.0407 S13: 0.1094 REMARK 3 S21: 0.0266 S22: 0.0164 S23: 0.0855 REMARK 3 S31: 0.0124 S32: 0.0258 S33: 0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F4W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.34000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2BCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH8.1 22%(V/V) PEG8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.72000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.66500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.66500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 GLY A 279 REMARK 465 LEU A 280 REMARK 465 ASN A 281 REMARK 465 ASP A 282 REMARK 465 ILE A 283 REMARK 465 PHE A 284 REMARK 465 GLU A 285 REMARK 465 ALA A 286 REMARK 465 GLN A 287 REMARK 465 LYS A 288 REMARK 465 ILE A 289 REMARK 465 GLU A 290 REMARK 465 TRP A 291 REMARK 465 HIS A 292 REMARK 465 ALA A 293 REMARK 465 ALA A 294 REMARK 465 ALA A 295 REMARK 465 LEU A 296 REMARK 465 GLU A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 VAL B -2 REMARK 465 ASP B -1 REMARK 465 PRO C 276 REMARK 465 GLY C 277 REMARK 465 SER C 278 REMARK 465 GLY C 279 REMARK 465 LEU C 280 REMARK 465 ASN C 281 REMARK 465 ASP C 282 REMARK 465 ILE C 283 REMARK 465 PHE C 284 REMARK 465 GLU C 285 REMARK 465 ALA C 286 REMARK 465 GLN C 287 REMARK 465 LYS C 288 REMARK 465 ILE C 289 REMARK 465 GLU C 290 REMARK 465 TRP C 291 REMARK 465 HIS C 292 REMARK 465 ALA C 293 REMARK 465 ALA C 294 REMARK 465 ALA C 295 REMARK 465 LEU C 296 REMARK 465 GLU C 297 REMARK 465 HIS C 298 REMARK 465 HIS C 299 REMARK 465 HIS C 300 REMARK 465 HIS C 301 REMARK 465 HIS C 302 REMARK 465 HIS C 303 REMARK 465 VAL D -2 REMARK 465 ASP D -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 85 OD2 ASP A 137 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 17 OD1 ASN C 174 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET C -4 CG - SD - CE ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -3 106.15 -59.68 REMARK 500 ASP A 29 -118.03 45.83 REMARK 500 GLN A 54 49.07 -74.57 REMARK 500 TYR A 123 -66.72 -101.56 REMARK 500 ALA A 199 133.84 -170.63 REMARK 500 ASP B 59 6.45 -69.17 REMARK 500 ASP C 29 -119.63 46.65 REMARK 500 ARG C 48 17.09 -141.48 REMARK 500 GLU C 89 3.47 -68.67 REMARK 500 HIS C 114 88.97 -150.81 REMARK 500 TYR C 123 -64.31 -97.42 REMARK 500 LEU C 130 11.71 59.51 REMARK 500 ILE C 194 -69.11 -93.02 REMARK 500 SER C 195 -157.58 -91.53 REMARK 500 LYS C 268 134.67 -170.10 REMARK 500 TRP D 60 2.58 82.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP C 106 GLY C 107 -147.30 REMARK 500 SER C 195 ASP C 196 147.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F4W A 1 276 UNP D9UAY1 D9UAY1_HUMAN 25 300 DBREF 7F4W B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7F4W C 1 276 UNP D9UAY1 D9UAY1_HUMAN 25 300 DBREF 7F4W D 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7F4W E 1 9 PDB 7F4W 7F4W 1 9 DBREF 7F4W F 1 9 PDB 7F4W 7F4W 1 9 SEQADV 7F4W MET A -4 UNP D9UAY1 INITIATING METHIONINE SEQADV 7F4W ASN A -3 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W SER A -2 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W VAL A -1 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ASP A 0 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLY A 277 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W SER A 278 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLY A 279 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W LEU A 280 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ASN A 281 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ASP A 282 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ILE A 283 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W PHE A 284 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLU A 285 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA A 286 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLN A 287 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W LYS A 288 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ILE A 289 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLU A 290 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W TRP A 291 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 292 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA A 293 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA A 294 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA A 295 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W LEU A 296 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLU A 297 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 298 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 299 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 300 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 301 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 302 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS A 303 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W VAL B -2 UNP P61769 EXPRESSION TAG SEQADV 7F4W ASP B -1 UNP P61769 EXPRESSION TAG SEQADV 7F4W MET B 0 UNP P61769 EXPRESSION TAG SEQADV 7F4W MET C -4 UNP D9UAY1 INITIATING METHIONINE SEQADV 7F4W ASN C -3 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W SER C -2 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W VAL C -1 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ASP C 0 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLY C 277 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W SER C 278 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLY C 279 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W LEU C 280 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ASN C 281 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ASP C 282 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ILE C 283 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W PHE C 284 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLU C 285 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA C 286 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLN C 287 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W LYS C 288 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ILE C 289 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLU C 290 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W TRP C 291 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 292 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA C 293 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA C 294 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W ALA C 295 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W LEU C 296 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W GLU C 297 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 298 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 299 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 300 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 301 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 302 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W HIS C 303 UNP D9UAY1 EXPRESSION TAG SEQADV 7F4W VAL D -2 UNP P61769 EXPRESSION TAG SEQADV 7F4W ASP D -1 UNP P61769 EXPRESSION TAG SEQADV 7F4W MET D 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 308 MET ASN SER VAL ASP GLY SER HIS SER MET ARG TYR PHE SEQRES 2 A 308 SER THR SER VAL SER ARG PRO GLY ARG GLY GLU PRO ARG SEQRES 3 A 308 PHE ILE ALA VAL GLY TYR VAL ASP ASP THR GLN PHE VAL SEQRES 4 A 308 ARG PHE ASP SER ASP ALA ALA SER GLN ARG MET GLU PRO SEQRES 5 A 308 ARG ALA PRO TRP ILE GLU GLN GLU GLY PRO GLU TYR TRP SEQRES 6 A 308 ASP GLU GLU THR GLY LYS VAL LYS ALA HIS SER GLN THR SEQRES 7 A 308 ASP ARG GLU ASN LEU ARG ILE ALA LEU ARG TYR TYR ASN SEQRES 8 A 308 GLN SER GLU ALA GLY SER HIS THR LEU GLN MET MET PHE SEQRES 9 A 308 GLY CYS ASP VAL GLY SER ASP GLY ARG PHE LEU ARG GLY SEQRES 10 A 308 TYR HIS GLN TYR ALA TYR ASP GLY LYS ASP TYR ILE ALA SEQRES 11 A 308 LEU LYS GLU ASP LEU ARG SER TRP THR ALA ALA ASP MET SEQRES 12 A 308 ALA ALA GLN ILE THR LYS ARG LYS TRP GLU ALA ALA HIS SEQRES 13 A 308 VAL ALA GLU GLN GLN ARG ALA TYR LEU GLU GLY THR CYS SEQRES 14 A 308 VAL ASP GLY LEU ARG ARG TYR LEU GLU ASN GLY LYS GLU SEQRES 15 A 308 THR LEU GLN ARG THR ASP PRO PRO LYS THR HIS MET THR SEQRES 16 A 308 HIS HIS PRO ILE SER ASP HIS GLU ALA THR LEU ARG CYS SEQRES 17 A 308 TRP ALA LEU GLY PHE TYR PRO ALA GLU ILE THR LEU THR SEQRES 18 A 308 TRP GLN ARG ASP GLY GLU ASP GLN THR GLN ASP THR GLU SEQRES 19 A 308 LEU VAL GLU THR ARG PRO ALA GLY ASP GLY THR PHE GLN SEQRES 20 A 308 LYS TRP ALA ALA VAL VAL VAL PRO SER GLY GLU GLU GLN SEQRES 21 A 308 ARG TYR THR CYS HIS VAL GLN HIS GLU GLY LEU PRO LYS SEQRES 22 A 308 PRO LEU THR LEU ARG TRP GLU PRO GLY SER GLY LEU ASN SEQRES 23 A 308 ASP ILE PHE GLU ALA GLN LYS ILE GLU TRP HIS ALA ALA SEQRES 24 A 308 ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 102 VAL ASP MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SEQRES 2 B 102 SER ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU SEQRES 3 B 102 ASN CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU SEQRES 4 B 102 VAL ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL SEQRES 5 B 102 GLU HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE SEQRES 6 B 102 TYR LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS SEQRES 7 B 102 ASP GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER SEQRES 8 B 102 GLN PRO LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 308 MET ASN SER VAL ASP GLY SER HIS SER MET ARG TYR PHE SEQRES 2 C 308 SER THR SER VAL SER ARG PRO GLY ARG GLY GLU PRO ARG SEQRES 3 C 308 PHE ILE ALA VAL GLY TYR VAL ASP ASP THR GLN PHE VAL SEQRES 4 C 308 ARG PHE ASP SER ASP ALA ALA SER GLN ARG MET GLU PRO SEQRES 5 C 308 ARG ALA PRO TRP ILE GLU GLN GLU GLY PRO GLU TYR TRP SEQRES 6 C 308 ASP GLU GLU THR GLY LYS VAL LYS ALA HIS SER GLN THR SEQRES 7 C 308 ASP ARG GLU ASN LEU ARG ILE ALA LEU ARG TYR TYR ASN SEQRES 8 C 308 GLN SER GLU ALA GLY SER HIS THR LEU GLN MET MET PHE SEQRES 9 C 308 GLY CYS ASP VAL GLY SER ASP GLY ARG PHE LEU ARG GLY SEQRES 10 C 308 TYR HIS GLN TYR ALA TYR ASP GLY LYS ASP TYR ILE ALA SEQRES 11 C 308 LEU LYS GLU ASP LEU ARG SER TRP THR ALA ALA ASP MET SEQRES 12 C 308 ALA ALA GLN ILE THR LYS ARG LYS TRP GLU ALA ALA HIS SEQRES 13 C 308 VAL ALA GLU GLN GLN ARG ALA TYR LEU GLU GLY THR CYS SEQRES 14 C 308 VAL ASP GLY LEU ARG ARG TYR LEU GLU ASN GLY LYS GLU SEQRES 15 C 308 THR LEU GLN ARG THR ASP PRO PRO LYS THR HIS MET THR SEQRES 16 C 308 HIS HIS PRO ILE SER ASP HIS GLU ALA THR LEU ARG CYS SEQRES 17 C 308 TRP ALA LEU GLY PHE TYR PRO ALA GLU ILE THR LEU THR SEQRES 18 C 308 TRP GLN ARG ASP GLY GLU ASP GLN THR GLN ASP THR GLU SEQRES 19 C 308 LEU VAL GLU THR ARG PRO ALA GLY ASP GLY THR PHE GLN SEQRES 20 C 308 LYS TRP ALA ALA VAL VAL VAL PRO SER GLY GLU GLU GLN SEQRES 21 C 308 ARG TYR THR CYS HIS VAL GLN HIS GLU GLY LEU PRO LYS SEQRES 22 C 308 PRO LEU THR LEU ARG TRP GLU PRO GLY SER GLY LEU ASN SEQRES 23 C 308 ASP ILE PHE GLU ALA GLN LYS ILE GLU TRP HIS ALA ALA SEQRES 24 C 308 ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 102 VAL ASP MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SEQRES 2 D 102 SER ARG HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU SEQRES 3 D 102 ASN CYS TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU SEQRES 4 D 102 VAL ASP LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL SEQRES 5 D 102 GLU HIS SER ASP LEU SER PHE SER LYS ASP TRP SER PHE SEQRES 6 D 102 TYR LEU LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS SEQRES 7 D 102 ASP GLU TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER SEQRES 8 D 102 GLN PRO LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 E 9 ASN TYR ASN TYR LEU TYR ARG LEU PHE SEQRES 1 F 9 ASN TYR ASN TYR LEU TYR ARG LEU PHE HELIX 1 AA1 GLY A 56 TYR A 85 1 30 HELIX 2 AA2 ASP A 137 ALA A 149 1 13 HELIX 3 AA3 HIS A 151 GLU A 161 1 11 HELIX 4 AA4 GLY A 162 GLY A 175 1 14 HELIX 5 AA5 GLY A 175 GLN A 180 1 6 HELIX 6 AA6 GLU A 253 GLN A 255 5 3 HELIX 7 AA7 ALA C 49 GLU C 53 5 5 HELIX 8 AA8 GLY C 56 ASN C 86 1 31 HELIX 9 AA9 ALA C 139 ALA C 149 1 11 HELIX 10 AB1 HIS C 151 GLY C 162 1 12 HELIX 11 AB2 GLY C 162 GLY C 175 1 14 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O LEU A 95 N SER A 11 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O GLN A 115 N MET A 98 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 HIS A 192 0 SHEET 2 AA2 4 THR A 200 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 VAL A 248 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 HIS A 192 0 SHEET 2 AA3 4 THR A 200 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 VAL A 248 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 GLU C 46 PRO C 47 0 SHEET 2 AA8 8 THR C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 AA8 8 ARG C 21 VAL C 28 -1 N VAL C 28 O THR C 31 SHEET 4 AA8 8 HIS C 3 VAL C 12 -1 N PHE C 8 O VAL C 25 SHEET 5 AA8 8 THR C 94 VAL C 103 -1 O PHE C 99 N TYR C 7 SHEET 6 AA8 8 PHE C 109 TYR C 118 -1 O GLN C 115 N MET C 98 SHEET 7 AA8 8 LYS C 121 LEU C 126 -1 O LYS C 121 N TYR C 118 SHEET 8 AA8 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 AA9 4 LYS C 186 PRO C 193 0 SHEET 2 AA9 4 GLU C 198 LEU C 206 -1 O THR C 200 N HIS C 192 SHEET 3 AA9 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 AA9 4 THR C 228 LEU C 230 -1 N GLU C 229 O ALA C 246 SHEET 1 AB1 4 LYS C 186 PRO C 193 0 SHEET 2 AB1 4 GLU C 198 LEU C 206 -1 O THR C 200 N HIS C 192 SHEET 3 AB1 4 PHE C 241 PRO C 250 -1 O ALA C 245 N CYS C 203 SHEET 4 AB1 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 AB2 4 GLU C 222 ASP C 223 0 SHEET 2 AB2 4 THR C 214 ARG C 219 -1 N ARG C 219 O GLU C 222 SHEET 3 AB2 4 TYR C 257 GLN C 262 -1 O HIS C 260 N THR C 216 SHEET 4 AB2 4 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 AB3 4 LYS D 6 SER D 11 0 SHEET 2 AB3 4 ASN D 21 PHE D 30 -1 O SER D 28 N LYS D 6 SHEET 3 AB3 4 PHE D 62 PHE D 70 -1 O PHE D 70 N ASN D 21 SHEET 4 AB3 4 GLU D 50 HIS D 51 -1 N GLU D 50 O TYR D 67 SHEET 1 AB4 4 LYS D 6 SER D 11 0 SHEET 2 AB4 4 ASN D 21 PHE D 30 -1 O SER D 28 N LYS D 6 SHEET 3 AB4 4 PHE D 62 PHE D 70 -1 O PHE D 70 N ASN D 21 SHEET 4 AB4 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 AB5 4 GLU D 44 ARG D 45 0 SHEET 2 AB5 4 GLU D 36 LYS D 41 -1 N LYS D 41 O GLU D 44 SHEET 3 AB5 4 TYR D 78 ASN D 83 -1 O ALA D 79 N LEU D 40 SHEET 4 AB5 4 LYS D 91 LYS D 94 -1 O VAL D 93 N CYS D 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.06 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.05 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.05 SSBOND 4 CYS C 101 CYS C 164 1555 1555 2.06 SSBOND 5 CYS C 203 CYS C 259 1555 1555 2.02 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.05 CISPEP 1 TYR A 209 PRO A 210 0 6.15 CISPEP 2 HIS B 31 PRO B 32 0 2.88 CISPEP 3 TYR C 209 PRO C 210 0 -2.04 CISPEP 4 HIS D 31 PRO D 32 0 -2.84 CRYST1 47.440 135.600 153.330 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007375 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006522 0.00000