HEADER VIRAL PROTEIN/IMMUNE SYSTEM 26-JUN-21 7F6Y TITLE COMPLEX STRUCTURE OF ANTIBODY BD-503 AND RBD-E484K OF COVID-19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: R; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF BD-503; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF BD-503; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COVID-19, SARS-COV-2, NEUTRALIZATION ANTIBODY, ANTIVIRAL PROTEIN, KEYWDS 2 VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.XU,B.WANG,T.N.ZHAO,X.D.SU REVDAT 3 29-NOV-23 7F6Y 1 REMARK REVDAT 2 02-NOV-22 7F6Y 1 JRNL REVDAT 1 29-JUN-22 7F6Y 0 JRNL AUTH H.XU,B.WANG,T.N.ZHAO,Z.T.LIANG,T.B.PENG,X.H.SONG,J.J.WU, JRNL AUTH 2 Y.C.WANG,X.D.SU JRNL TITL STRUCTURE-BASED ANALYSES OF NEUTRALIZATION ANTIBODIES JRNL TITL 2 INTERACTING WITH NATURALLY OCCURRING SARS-COV-2 RBD JRNL TITL 3 VARIANTS. JRNL REF CELL RES. V. 31 1126 2021 JRNL REFN ISSN 1001-0602 JRNL PMID 34480123 JRNL DOI 10.1038/S41422-021-00554-1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.240 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 8.0000 0.98 1252 134 0.1670 0.2342 REMARK 3 2 8.4406 - 6.7855 1.00 1267 144 0.1696 0.2003 REMARK 3 3 6.7855 - 5.9537 1.00 1292 150 0.1755 0.1905 REMARK 3 4 5.9537 - 5.4212 1.00 1255 140 0.1487 0.2285 REMARK 3 5 5.4212 - 5.0393 1.00 1293 133 0.1413 0.1650 REMARK 3 6 5.0393 - 4.7464 1.00 1249 147 0.1429 0.2268 REMARK 3 7 4.7464 - 4.5116 1.00 1302 129 0.1298 0.1786 REMARK 3 8 4.5116 - 4.3172 1.00 1264 150 0.1446 0.1891 REMARK 3 9 4.3172 - 4.1526 0.99 1277 136 0.1651 0.1862 REMARK 3 10 4.1526 - 4.0105 0.99 1238 144 0.1807 0.2276 REMARK 3 11 4.0105 - 3.8860 0.99 1286 128 0.1915 0.2437 REMARK 3 12 3.8860 - 3.7757 0.99 1267 143 0.2106 0.2637 REMARK 3 13 3.7757 - 3.6769 0.99 1259 115 0.2261 0.3215 REMARK 3 14 3.6769 - 3.5877 0.99 1310 146 0.2156 0.2819 REMARK 3 15 3.5877 - 3.5066 1.00 1203 144 0.2445 0.3111 REMARK 3 16 3.5066 - 3.4324 0.99 1308 142 0.2485 0.3295 REMARK 3 17 3.4324 - 3.3640 1.00 1262 136 0.2615 0.3313 REMARK 3 18 3.3640 - 3.3008 1.00 1280 139 0.2489 0.3262 REMARK 3 19 3.3008 - 3.2421 1.00 1244 150 0.2701 0.3799 REMARK 3 20 3.2421 - 3.1874 1.00 1287 129 0.2985 0.4110 REMARK 3 21 3.1874 - 3.1362 1.00 1243 149 0.3222 0.3545 REMARK 3 22 3.1362 - 3.0881 1.00 1282 149 0.2985 0.3700 REMARK 3 23 3.0881 - 3.0429 1.00 1290 122 0.3243 0.3243 REMARK 3 24 3.0429 - 3.0001 1.00 1258 140 0.3338 0.4169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4879 REMARK 3 ANGLE : 1.053 6646 REMARK 3 CHIRALITY : 0.053 742 REMARK 3 PLANARITY : 0.006 853 REMARK 3 DIHEDRAL : 15.029 2903 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -2.4292 40.5548 4.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.2676 REMARK 3 T33: 0.2260 T12: 0.0160 REMARK 3 T13: -0.0384 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.1154 L22: 1.0635 REMARK 3 L33: 0.3892 L12: -0.1284 REMARK 3 L13: -0.0982 L23: 0.6174 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.0498 S13: 0.0250 REMARK 3 S21: 0.0867 S22: -0.0427 S23: -0.1564 REMARK 3 S31: 0.0274 S32: -0.0677 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33810 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7EJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.1M SODIUM CITRATE, PH 5.0, 15% (W/V) PEG 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.34300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.34300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.53550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.14000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.53550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.34300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.14000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.53550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.34300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.14000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.53550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG R 319 REMARK 465 VAL R 320 REMARK 465 GLN R 321 REMARK 465 PRO R 322 REMARK 465 THR R 323 REMARK 465 GLU R 324 REMARK 465 SER R 325 REMARK 465 ILE R 326 REMARK 465 VAL R 327 REMARK 465 ARG R 328 REMARK 465 PHE R 329 REMARK 465 PRO R 330 REMARK 465 ASN R 331 REMARK 465 ILE R 332 REMARK 465 THR R 333 REMARK 465 LYS R 528 REMARK 465 LYS R 529 REMARK 465 SER R 530 REMARK 465 THR R 531 REMARK 465 ASN R 532 REMARK 465 LEU R 533 REMARK 465 VAL R 534 REMARK 465 LYS R 535 REMARK 465 ASN R 536 REMARK 465 LYS R 537 REMARK 465 CYS R 538 REMARK 465 VAL R 539 REMARK 465 ASN R 540 REMARK 465 PHE R 541 REMARK 465 SER H 132 REMARK 465 LYS H 133 REMARK 465 SER H 134 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 GLY H 137 REMARK 465 CYS H 220 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 CYS L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO R 337 49.15 -73.66 REMARK 500 ALA R 352 48.40 -106.81 REMARK 500 TRP R 353 151.27 -48.87 REMARK 500 LEU R 368 -61.98 -94.83 REMARK 500 PHE R 377 58.45 -154.17 REMARK 500 LYS R 386 28.27 -66.72 REMARK 500 ASN R 422 -48.70 -137.82 REMARK 500 TYR R 423 117.21 -163.72 REMARK 500 ASP R 428 37.33 -95.13 REMARK 500 PHE R 486 124.81 -37.55 REMARK 500 PRO R 521 108.74 -50.09 REMARK 500 THR H 90 108.98 -52.12 REMARK 500 ALA H 100 -111.71 51.15 REMARK 500 ASP H 148 64.41 62.92 REMARK 500 PHE H 150 142.20 -171.09 REMARK 500 SER H 176 7.76 -68.35 REMARK 500 SER L 7 -71.27 -70.72 REMARK 500 SER L 9 -69.92 72.48 REMARK 500 SER L 30 -135.41 50.20 REMARK 500 ALA L 51 -30.10 72.51 REMARK 500 PRO L 59 150.61 -49.93 REMARK 500 SER L 67 144.40 -175.18 REMARK 500 ALA L 84 -163.26 -168.69 REMARK 500 ASN L 139 71.01 46.93 REMARK 500 SER L 157 -79.57 -117.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F6Y R 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 DBREF 7F6Y H 1 222 PDB 7F6Y 7F6Y 1 222 DBREF 7F6Y L 1 215 PDB 7F6Y 7F6Y 1 215 SEQADV 7F6Y LYS R 484 UNP P0DTC2 GLU 484 VARIANT SEQRES 1 R 223 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 R 223 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 R 223 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 R 223 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 R 223 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 R 223 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 R 223 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 R 223 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 R 223 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 R 223 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 R 223 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 R 223 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 R 223 ALA GLY SER THR PRO CYS ASN GLY VAL LYS GLY PHE ASN SEQRES 14 R 223 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 R 223 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 R 223 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 R 223 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 R 223 ASN PHE SEQRES 1 H 222 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ILE GLN SEQRES 2 H 222 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 222 LEU ILE VAL SER SER ASN TYR MET SER TRP VAL ARG GLN SEQRES 4 H 222 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER VAL LEU TYR SEQRES 5 H 222 ALA GLY GLY SER THR ASP TYR ALA GLY SER VAL LYS GLY SEQRES 6 H 222 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR LEU SEQRES 7 H 222 TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR ALA SEQRES 8 H 222 VAL TYR TYR CYS ALA ARG ASP ALA ALA VAL TYR GLY ILE SEQRES 9 H 222 ASP VAL TRP GLY GLN GLY THR THR VAL THR VAL SER SER SEQRES 10 H 222 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 222 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 222 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 222 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 222 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 222 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 222 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 222 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP SEQRES 18 H 222 LYS SEQRES 1 L 215 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN SER ILE SER SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 215 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 215 TYR THR THR PRO LEU PHE THR PHE GLY PRO GLY THR LYS SEQRES 9 L 215 VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS HET NAG R 601 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 HELIX 1 AA1 PRO R 337 ASN R 343 1 7 HELIX 2 AA2 SER R 349 TRP R 353 5 5 HELIX 3 AA3 TYR R 365 ASN R 370 1 6 HELIX 4 AA4 ASP R 405 ILE R 410 5 6 HELIX 5 AA5 GLY R 416 ASN R 422 1 7 HELIX 6 AA6 SER R 438 SER R 443 1 6 HELIX 7 AA7 GLY R 502 TYR R 505 5 4 HELIX 8 AA8 ILE H 28 ASN H 32 5 5 HELIX 9 AA9 ARG H 86 THR H 90 5 5 HELIX 10 AB1 ALA H 100 TYR H 102 5 3 HELIX 11 AB2 SER H 160 ALA H 162 5 3 HELIX 12 AB3 SER H 191 LEU H 193 5 3 HELIX 13 AB4 LYS H 205 ASN H 208 5 4 HELIX 14 AB5 GLN L 79 PHE L 83 5 5 HELIX 15 AB6 SER L 122 SER L 128 1 7 HELIX 16 AB7 LYS L 184 LYS L 189 1 6 SHEET 1 AA1 5 ASN R 354 ILE R 358 0 SHEET 2 AA1 5 ASN R 394 ARG R 403 -1 O ALA R 397 N LYS R 356 SHEET 3 AA1 5 PRO R 507 GLU R 516 -1 O VAL R 512 N ASP R 398 SHEET 4 AA1 5 GLY R 431 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 5 AA1 5 THR R 376 TYR R 380 -1 N TYR R 380 O GLY R 431 SHEET 1 AA2 3 CYS R 361 VAL R 362 0 SHEET 2 AA2 3 VAL R 524 CYS R 525 1 O CYS R 525 N CYS R 361 SHEET 3 AA2 3 CYS R 391 PHE R 392 -1 N PHE R 392 O VAL R 524 SHEET 1 AA3 2 LEU R 452 ARG R 454 0 SHEET 2 AA3 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AA4 2 TYR R 473 GLN R 474 0 SHEET 2 AA4 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SHEET 1 AA5 4 GLN H 3 SER H 7 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA5 4 THR H 77 MET H 82 -1 O LEU H 78 N CYS H 22 SHEET 4 AA5 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA6 6 LEU H 11 ILE H 12 0 SHEET 2 AA6 6 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA6 6 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA6 6 TYR H 33 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA6 6 LEU H 45 LEU H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA6 6 THR H 57 TYR H 59 -1 O ASP H 58 N VAL H 50 SHEET 1 AA7 4 LEU H 11 ILE H 12 0 SHEET 2 AA7 4 THR H 111 VAL H 115 1 O THR H 114 N ILE H 12 SHEET 3 AA7 4 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 111 SHEET 4 AA7 4 ILE H 104 TRP H 107 -1 O VAL H 106 N ARG H 97 SHEET 1 AA8 4 SER H 124 LEU H 128 0 SHEET 2 AA8 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA8 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA8 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AA9 4 SER H 124 LEU H 128 0 SHEET 2 AA9 4 THR H 139 TYR H 149 -1 O LEU H 145 N PHE H 126 SHEET 3 AA9 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA9 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB1 3 THR H 155 TRP H 158 0 SHEET 2 AB1 3 TYR H 198 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB1 3 THR H 209 VAL H 215 -1 O VAL H 211 N VAL H 202 SHEET 1 AB2 4 MET L 4 GLN L 6 0 SHEET 2 AB2 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB2 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB2 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AB3 6 SER L 10 ALA L 13 0 SHEET 2 AB3 6 THR L 103 ILE L 107 1 O LYS L 104 N LEU L 11 SHEET 3 AB3 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 103 SHEET 4 AB3 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB3 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AB3 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AB4 4 SER L 115 PHE L 119 0 SHEET 2 AB4 4 THR L 130 PHE L 140 -1 O ASN L 138 N SER L 115 SHEET 3 AB4 4 TYR L 174 SER L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 AB4 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB5 4 ALA L 154 LEU L 155 0 SHEET 2 AB5 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB5 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB5 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS R 336 CYS R 361 1555 1555 2.02 SSBOND 2 CYS R 379 CYS R 432 1555 1555 2.04 SSBOND 3 CYS R 391 CYS R 525 1555 1555 2.05 SSBOND 4 CYS R 480 CYS R 488 1555 1555 2.04 SSBOND 5 CYS H 22 CYS H 95 1555 1555 2.04 SSBOND 6 CYS H 144 CYS H 200 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 8 CYS L 135 CYS L 195 1555 1555 2.03 LINK ND2 ASN R 343 C1 NAG R 601 1555 1555 1.45 CISPEP 1 PHE H 150 PRO H 151 0 -1.84 CISPEP 2 GLU H 152 PRO H 153 0 -4.00 CISPEP 3 THR L 94 PRO L 95 0 2.81 CISPEP 4 TYR L 141 PRO L 142 0 -2.31 CRYST1 80.280 149.071 146.686 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006817 0.00000