HEADER OXIDOREDUCTASE 26-JUN-21 7F70 TITLE CRYSTAL STRUCTURE OF RV3094C COMPND MOL_ID: 1; COMPND 2 MOLECULE: RV3094C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV3094C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SULFOXIDATION, ETHIONAMIDE, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.X.WANG,S.Y.OUYANG,H.T.ZHANG REVDAT 3 29-NOV-23 7F70 1 REMARK REVDAT 2 22-FEB-23 7F70 1 JRNL REVDAT 1 29-JUN-22 7F70 0 JRNL AUTH L.WAN,P.HU,L.ZHANG,Z.X.WANG,J.FLEMING,B.NI,J.LUO,C.X.GUAN, JRNL AUTH 2 L.BAI,Y.TAN,H.LIU,N.LI,T.XIAO,H.BAI,Y.A.ZHANG,X.E.ZHANG, JRNL AUTH 3 K.WAN,L.BI,S.OUYANG,H.ZHANG JRNL TITL OMICS ANALYSIS OF MYCOBACTERIUM TUBERCULOSIS ISOLATES JRNL TITL 2 UNCOVERS RV3094C, AN ETHIONAMIDE METABOLISM-ASSOCIATED GENE. JRNL REF COMMUN BIOL V. 6 156 2023 JRNL REFN ESSN 2399-3642 JRNL PMID 36750726 JRNL DOI 10.1038/S42003-023-04433-W REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 49234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.690 REMARK 3 FREE R VALUE TEST SET COUNT : 3785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 85.1600 - 6.4200 1.00 1815 155 0.1589 0.1855 REMARK 3 2 6.4200 - 5.1000 1.00 1821 153 0.1780 0.2177 REMARK 3 3 5.0900 - 4.4500 1.00 1816 152 0.1632 0.1499 REMARK 3 4 4.4500 - 4.0400 1.00 1803 152 0.1532 0.2248 REMARK 3 5 4.0400 - 3.7500 1.00 1854 149 0.1760 0.2047 REMARK 3 6 3.7500 - 3.5300 1.00 1781 149 0.1887 0.2181 REMARK 3 7 3.5300 - 3.3600 1.00 1835 148 0.2111 0.2519 REMARK 3 8 3.3600 - 3.2100 0.99 1798 149 0.1982 0.2187 REMARK 3 9 3.2100 - 3.0900 1.00 1814 156 0.1964 0.2149 REMARK 3 10 3.0900 - 2.9800 1.00 1815 149 0.1949 0.2136 REMARK 3 11 2.9800 - 2.8900 1.00 1797 149 0.2056 0.2195 REMARK 3 12 2.8900 - 2.8000 0.99 1796 155 0.1964 0.2224 REMARK 3 13 2.8000 - 2.7300 0.99 1824 157 0.1894 0.2023 REMARK 3 14 2.7300 - 2.7000 0.90 793 63 0.2651 0.3298 REMARK 3 15 2.6500 - 2.6000 0.98 1489 125 0.2045 0.2261 REMARK 3 16 2.6000 - 2.5500 0.99 1803 149 0.1976 0.2389 REMARK 3 17 2.5500 - 2.5000 0.96 1738 143 0.2327 0.2705 REMARK 3 18 2.5000 - 2.4500 1.00 1844 153 0.2223 0.2810 REMARK 3 19 2.4500 - 2.4100 1.00 1789 151 0.2284 0.2476 REMARK 3 20 2.4100 - 2.3600 0.99 1825 150 0.2303 0.2555 REMARK 3 21 2.3600 - 2.3300 1.00 1795 148 0.2381 0.2709 REMARK 3 22 2.3300 - 2.2900 0.97 1762 146 0.2877 0.3884 REMARK 3 23 2.2900 - 2.2700 0.89 1133 99 0.3408 0.3331 REMARK 3 24 2.2300 - 2.2300 0.93 505 41 0.2401 0.2828 REMARK 3 25 2.2300 - 2.2000 0.99 1757 148 0.2468 0.2908 REMARK 3 26 2.2000 - 2.1700 0.99 1833 148 0.2305 0.3089 REMARK 3 27 2.1700 - 2.1400 0.99 1814 148 0.2333 0.2405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1300022999. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 85.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.15.2_3472 REMARK 200 STARTING MODEL: 4KCF REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM NITRATE, 0.1M BIS TRIS REMARK 280 PROPANE PH=8.5, 20% W/V PEG3350, LIQUID DIFFUSION, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 67.16100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.06000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.53000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.16100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.59000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.59000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.16100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.53000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 67.16100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.06000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.16100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.06000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.16100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 82.59000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 27.53000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.16100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 27.53000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 82.59000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.16100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.16100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.06000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 249 REMARK 465 LEU A 250 REMARK 465 GLY A 251 REMARK 465 SER A 252 REMARK 465 THR A 253 REMARK 465 ARG A 254 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 31 O HOH A 401 1.95 REMARK 500 O HOH A 541 O HOH A 558 2.00 REMARK 500 O HOH A 500 O HOH A 530 2.05 REMARK 500 OE2 GLU A 69 O HOH A 402 2.10 REMARK 500 O HOH A 550 O HOH A 563 2.13 REMARK 500 O HOH A 503 O HOH A 553 2.16 REMARK 500 OD1 ASP A 238 O HOH A 403 2.16 REMARK 500 O HOH A 512 O HOH A 557 2.17 REMARK 500 O HOH A 565 O HOH A 566 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 263 CB GLN A 263 CG -0.201 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 364 CB - CG - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG A 364 CG - CD - NE ANGL. DEV. = -26.0 DEGREES REMARK 500 ARG A 364 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 106.37 82.46 REMARK 500 ALA A 55 64.25 65.10 REMARK 500 ASP A 153 -120.78 52.26 REMARK 500 ASP A 197 -29.10 -16.39 REMARK 500 ASP A 209 50.49 -98.97 REMARK 500 GLU A 258 24.41 -78.36 REMARK 500 VAL A 354 18.78 -142.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 196 ASP A 197 149.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 136 0.07 SIDE CHAIN REMARK 500 ASP A 197 0.08 SIDE CHAIN REMARK 500 ARG A 364 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7F70 A 2 376 UNP O05773 O05773_MYCTU 2 376 SEQADV 7F70 VAL A 1 UNP O05773 EXPRESSION TAG SEQRES 1 A 376 VAL ASN GLN SER GLU THR GLU ILE GLU ILE LEU ALA GLU SEQRES 2 A 376 LYS ILE ALA ARG TRP ALA ARG ALA ARG SER ALA GLU ILE SEQRES 3 A 376 GLU ARG ASP ARG ARG LEU PRO ASP GLU LEU VAL THR ARG SEQRES 4 A 376 LEU ARG GLU ALA GLY LEU LEU ARG ALA THR MET PRO ARG SEQRES 5 A 376 GLU VAL ALA ALA PRO GLU LEU ALA PRO GLY ARG ALA LEU SEQRES 6 A 376 ARG CYS ALA GLU ALA VAL ALA ARG GLY ASP ALA SER ALA SEQRES 7 A 376 GLY TRP CYS VAL SER ILE ALA ILE THR SER ALA LEU LEU SEQRES 8 A 376 VAL ALA TYR LEU PRO ALA ARG SER ARG GLU GLU MET PHE SEQRES 9 A 376 GLY GLY GLY ARG GLY VAL ALA ALA GLY VAL TRP ALA PRO SEQRES 10 A 376 ARG GLY THR ALA ARG SER VAL ASP GLY GLY VAL VAL VAL SEQRES 11 A 376 SER GLY ARG TRP PRO PHE CYS SER GLY ILE ASN HIS ALA SEQRES 12 A 376 ASP ILE MET PHE ALA GLY CYS PHE VAL ASP ASP ARG GLN SEQRES 13 A 376 VAL PRO SER VAL VAL ALA LEU ASN LYS ASP GLU LEU GLN SEQRES 14 A 376 VAL LEU ASP THR TRP HIS THR LEU GLY LEU ARG GLY THR SEQRES 15 A 376 GLY SER HIS ASP CYS VAL ALA ASP ASP VAL PHE VAL PRO SEQRES 16 A 376 ALA ASP ARG VAL PHE SER VAL PHE ASP GLY PRO ILE VAL SEQRES 17 A 376 ASP ARG PRO LEU TYR ARG PHE PRO VAL PHE GLY PHE PHE SEQRES 18 A 376 ALA LEU SER ILE GLY ALA ALA ALA LEU GLY ASN ALA ARG SEQRES 19 A 376 ALA ALA ILE ASP ASP LEU VAL GLU LEU ALA GLY GLY LYS SEQRES 20 A 376 LYS GLY LEU GLY SER THR ARG THR LEU ALA GLU ARG SER SEQRES 21 A 376 ALA THR GLN ALA ALA ALA ALA THR ALA GLU SER ALA LEU SEQRES 22 A 376 GLY ALA ALA ARG ALA LEU PHE TYR GLU VAL ILE GLU ALA SEQRES 23 A 376 ALA TRP GLN VAL SER HIS ASP ALA GLU ALA VAL PRO VAL SEQRES 24 A 376 THR MET ARG ASN ARG LEU ARG LEU ALA ALA THR HIS ALA SEQRES 25 A 376 VAL ARG THR SER ALA ASP VAL VAL ARG SER MET TYR ASP SEQRES 26 A 376 LEU ALA GLY GLY THR ALA ILE TYR ASP ASN ALA PRO LEU SEQRES 27 A 376 GLN ARG ARG PHE ARG ASP ALA PHE THR ALA THR ALA HIS SEQRES 28 A 376 PHE GLN VAL ASN GLU ALA SER ARG GLU LEU PRO GLY ARG SEQRES 29 A 376 VAL LEU LEU ASP GLN PRO ALA ASP VAL SER MET LEU FORMUL 2 HOH *166(H2 O) HELIX 1 AA1 GLU A 7 ARG A 22 1 16 HELIX 2 AA2 ARG A 22 ARG A 30 1 9 HELIX 3 AA3 PRO A 33 ALA A 43 1 11 HELIX 4 AA4 GLY A 44 ALA A 48 5 5 HELIX 5 AA5 PRO A 51 ALA A 55 5 5 HELIX 6 AA6 ALA A 60 ASP A 75 1 16 HELIX 7 AA7 ASP A 75 ALA A 89 1 15 HELIX 8 AA8 LEU A 90 LEU A 95 5 6 HELIX 9 AA9 PRO A 96 GLY A 105 1 10 HELIX 10 AB1 GLY A 106 ARG A 108 5 3 HELIX 11 AB2 ASP A 166 LEU A 168 5 3 HELIX 12 AB3 LEU A 179 GLY A 183 5 5 HELIX 13 AB4 SER A 201 GLY A 205 5 5 HELIX 14 AB5 ARG A 210 PHE A 215 1 6 HELIX 15 AB6 PRO A 216 GLY A 246 1 31 HELIX 16 AB7 ARG A 259 SER A 291 1 33 HELIX 17 AB8 PRO A 298 GLY A 328 1 31 HELIX 18 AB9 GLY A 329 TYR A 333 5 5 HELIX 19 AC1 ALA A 336 THR A 349 1 14 HELIX 20 AC2 ASN A 355 SER A 358 5 4 HELIX 21 AC3 ARG A 359 LEU A 367 1 9 SHEET 1 AA1 7 GLN A 169 LEU A 171 0 SHEET 2 AA1 7 HIS A 185 PRO A 195 -1 O VAL A 188 N GLN A 169 SHEET 3 AA1 7 GLY A 127 CYS A 137 -1 N VAL A 130 O VAL A 192 SHEET 4 AA1 7 ALA A 111 VAL A 124 -1 N ARG A 122 O VAL A 129 SHEET 5 AA1 7 ILE A 145 VAL A 152 1 O ILE A 145 N ALA A 112 SHEET 6 AA1 7 SER A 159 ASN A 164 -1 O SER A 159 N CYS A 150 SHEET 7 AA1 7 VAL A 199 PHE A 200 -1 O PHE A 200 N VAL A 160 CRYST1 134.322 134.322 110.120 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009081 0.00000