HEADER IMMUNE SYSTEM 30-JUN-21 7F7P TITLE ACRIIC4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CRISPR PROTEIN ACRIIC4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAINFLUENZAE; SOURCE 3 ORGANISM_TAXID: 729; SOURCE 4 GENE: NCTC10672_00033, NCTC10672_02354; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTI-CRISPR ACRIIC4, INHIBITOR OF CRISPR-CAS 9, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR G.E.KIM,H.H.PARK REVDAT 2 29-MAY-24 7F7P 1 REMARK REVDAT 1 25-MAY-22 7F7P 0 JRNL AUTH G.E.KIM,S.Y.LEE,H.H.PARK JRNL TITL CRYSTAL STRUCTURE OF THE ANTI-CRISPR, ACRIIC4. JRNL REF PROTEIN SCI. V. 30 2474 2021 JRNL REFN ESSN 1469-896X JRNL PMID 34676610 JRNL DOI 10.1002/PRO.4214 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2600 - 3.2200 1.00 2868 152 0.2058 0.2578 REMARK 3 2 3.2200 - 2.5600 1.00 2825 148 0.2822 0.3363 REMARK 3 3 2.5600 - 2.2300 1.00 2800 148 0.2391 0.2983 REMARK 3 4 2.2300 - 2.0300 1.00 2805 147 0.1908 0.2288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1528 REMARK 3 ANGLE : 0.941 2044 REMARK 3 CHIRALITY : 0.049 220 REMARK 3 PLANARITY : 0.005 266 REMARK 3 DIHEDRAL : 13.910 190 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 125 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 29.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES/SODIUM HYDROXIDE PH 9.5 30 REMARK 280 % W/V PEG 3000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.05500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 12 91.38 -69.66 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7F7P A 1 88 UNP A0A377JKY9_HAEPA DBREF2 7F7P A A0A377JKY9 1 88 DBREF1 7F7P B 1 88 UNP A0A377JKY9_HAEPA DBREF2 7F7P B A0A377JKY9 1 88 SEQADV 7F7P SER A 6 UNP A0A377JKY ALA 6 CONFLICT SEQADV 7F7P GLU A 29 UNP A0A377JKY ASN 29 CONFLICT SEQADV 7F7P LYS A 64 UNP A0A377JKY GLN 64 CONFLICT SEQADV 7F7P LEU A 89 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P GLU A 90 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS A 91 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS A 92 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS A 93 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS A 94 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS A 95 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS A 96 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P SER B 6 UNP A0A377JKY ALA 6 CONFLICT SEQADV 7F7P GLU B 29 UNP A0A377JKY ASN 29 CONFLICT SEQADV 7F7P LYS B 64 UNP A0A377JKY GLN 64 CONFLICT SEQADV 7F7P LEU B 89 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P GLU B 90 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS B 91 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS B 92 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS B 93 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS B 94 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS B 95 UNP A0A377JKY EXPRESSION TAG SEQADV 7F7P HIS B 96 UNP A0A377JKY EXPRESSION TAG SEQRES 1 A 96 MET LYS ILE THR SER SER ASN PHE ALA THR ILE ALA THR SEQRES 2 A 96 SER GLU ASN PHE ALA LYS LEU SER VAL LEU PRO LYS ASN SEQRES 3 A 96 HIS ARG GLU PRO ILE LYS GLY LEU PHE LYS SER ALA VAL SEQRES 4 A 96 GLU GLN PHE SER SER ALA ARG ASP PHE PHE LYS ASN GLU SEQRES 5 A 96 ASN TYR SER LYS GLU LEU ALA GLU LYS PHE ASN LYS GLU SEQRES 6 A 96 ALA VAL ASN GLU ALA VAL GLU LYS LEU GLN LYS ALA ILE SEQRES 7 A 96 ASP LEU ALA GLU LYS GLN GLY ILE GLN PHE LEU GLU HIS SEQRES 8 A 96 HIS HIS HIS HIS HIS SEQRES 1 B 96 MET LYS ILE THR SER SER ASN PHE ALA THR ILE ALA THR SEQRES 2 B 96 SER GLU ASN PHE ALA LYS LEU SER VAL LEU PRO LYS ASN SEQRES 3 B 96 HIS ARG GLU PRO ILE LYS GLY LEU PHE LYS SER ALA VAL SEQRES 4 B 96 GLU GLN PHE SER SER ALA ARG ASP PHE PHE LYS ASN GLU SEQRES 5 B 96 ASN TYR SER LYS GLU LEU ALA GLU LYS PHE ASN LYS GLU SEQRES 6 B 96 ALA VAL ASN GLU ALA VAL GLU LYS LEU GLN LYS ALA ILE SEQRES 7 B 96 ASP LEU ALA GLU LYS GLN GLY ILE GLN PHE LEU GLU HIS SEQRES 8 B 96 HIS HIS HIS HIS HIS FORMUL 3 HOH *33(H2 O) HELIX 1 AA1 ASN A 7 ALA A 12 1 6 HELIX 2 AA2 THR A 13 LEU A 20 1 8 HELIX 3 AA3 SER A 21 LEU A 23 5 3 HELIX 4 AA4 PRO A 24 SER A 44 1 21 HELIX 5 AA5 SER A 55 LYS A 83 1 29 HELIX 6 AA6 HIS A 92 HIS A 96 5 5 HELIX 7 AA7 THR B 4 ALA B 12 1 9 HELIX 8 AA8 THR B 13 LYS B 19 1 7 HELIX 9 AA9 PRO B 24 ALA B 45 1 22 HELIX 10 AB1 ARG B 46 ASN B 51 5 6 HELIX 11 AB2 SER B 55 LYS B 83 1 29 CRYST1 32.790 52.110 54.390 90.00 95.69 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030497 0.000000 0.003039 0.00000 SCALE2 0.000000 0.019190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018477 0.00000