HEADER HYDROLASE 30-JUN-21 7F7Q TITLE ENTEROCOCCUS FAECALIS GH31 ALPHA-N-ACETYLGALACTOSAMINIDASE D455A IN TITLE 2 COMPLEX WITH P-NITROPHENYL ALPHA-N-ACETYLGALACTOSAMINIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH31 ALPHA-N-ACETYLGALACTOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS ATCC 10100; SOURCE 3 ORGANISM_TAXID: 1169312; SOURCE 4 ATCC: 10100; SOURCE 5 GENE: WOW_01747; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSIDE HYDROLASE, GH31, MUCIN, (BETA/ALPHA)8-BARREL, FIBRONECTIN- KEYWDS 2 LIKE, SUBSTRATE, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MIYAZAKI REVDAT 3 29-NOV-23 7F7Q 1 REMARK REVDAT 2 30-MAR-22 7F7Q 1 JRNL REVDAT 1 08-DEC-21 7F7Q 0 JRNL AUTH T.MIYAZAKI,M.IKEGAYA,S.ALONSO-GIL JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO THE SUBSTRATE JRNL TITL 2 SPECIFICITY AND HYDROLYSIS OF GH31 JRNL TITL 3 ALPHA-N-ACETYLGALACTOSAMINIDASE. JRNL REF BIOCHIMIE V. 195 90 2022 JRNL REFN ISSN 0300-9084 JRNL PMID 34826537 JRNL DOI 10.1016/J.BIOCHI.2021.11.007 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 184632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.046 REMARK 3 FREE R VALUE TEST SET COUNT : 9317 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12189 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 687 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 792 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58800 REMARK 3 B22 (A**2) : -0.52400 REMARK 3 B33 (A**2) : 1.11200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7371 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6716 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9993 ; 1.726 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15517 ; 1.548 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 920 ; 7.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 382 ;34.840 ;24.660 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1186 ;12.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 938 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8596 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1721 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1525 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 52 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3728 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 761 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3653 ; 0.542 ; 0.723 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3652 ; 0.543 ; 0.722 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4582 ; 0.945 ; 1.078 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4583 ; 0.944 ; 1.079 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3718 ; 0.921 ; 0.819 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3719 ; 0.921 ; 0.819 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5411 ; 1.387 ; 1.179 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5412 ; 1.387 ; 1.179 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 888 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7050 -15.0190 -21.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.1376 T22: 0.1669 REMARK 3 T33: 0.0771 T12: -0.0057 REMARK 3 T13: -0.0030 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.2495 L22: 0.1692 REMARK 3 L33: 0.1238 L12: -0.0815 REMARK 3 L13: 0.0418 L23: 0.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0216 S13: 0.0112 REMARK 3 S21: 0.0160 S22: 0.0243 S23: -0.0163 REMARK 3 S31: -0.0146 S32: -0.0053 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 889 A 973 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8940 -47.1620 -0.5660 REMARK 3 T TENSOR REMARK 3 T11: 1.2772 T22: 0.1723 REMARK 3 T33: 0.4390 T12: -0.1502 REMARK 3 T13: -0.7341 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 4.7601 L22: 15.7995 REMARK 3 L33: 5.4561 L12: 6.7812 REMARK 3 L13: 2.9732 L23: 2.4770 REMARK 3 S TENSOR REMARK 3 S11: 1.5304 S12: 0.2313 S13: -0.9321 REMARK 3 S21: 2.4917 S22: -0.1123 S23: -1.4926 REMARK 3 S31: 2.3517 S32: -0.2513 S33: -1.4182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7F7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 184729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.04400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6M76 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M AMMONIUM CITRATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.93750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.16450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.69700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.16450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.93750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.69700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 LEU A 35 REMARK 465 VAL A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 GLY A 39 REMARK 465 SER A 40 REMARK 465 HIS A 41 REMARK 465 MET A 42 REMARK 465 GLN A 43 REMARK 465 GLU A 44 REMARK 465 GLN A 45 REMARK 465 THR A 46 REMARK 465 ALA A 47 REMARK 465 LYS A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 VAL A 51 REMARK 465 ALA A 52 REMARK 465 ASP A 53 REMARK 465 SER A 54 REMARK 465 ALA A 55 REMARK 465 THR A 56 REMARK 465 ASP A 894 REMARK 465 GLN A 895 REMARK 465 LEU A 896 REMARK 465 THR A 897 REMARK 465 ILE A 898 REMARK 465 PRO A 899 REMARK 465 ALA A 900 REMARK 465 ASN A 901 REMARK 465 ILE A 902 REMARK 465 ASP A 919 REMARK 465 GLN A 920 REMARK 465 VAL A 921 REMARK 465 THR A 922 REMARK 465 GLU A 923 REMARK 465 ALA A 924 REMARK 465 PHE A 951 REMARK 465 LEU A 952 REMARK 465 SER A 953 REMARK 465 GLU A 954 REMARK 465 ILE A 974 REMARK 465 LYS A 975 REMARK 465 GLY A 976 REMARK 465 LYS A 977 REMARK 465 THR A 978 REMARK 465 GLN A 979 REMARK 465 ASP A 980 REMARK 465 ASP A 981 REMARK 465 PRO A 982 REMARK 465 TYR A 983 REMARK 465 LYS A 984 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 369 CG - CD - NE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 137 64.26 -118.74 REMARK 500 PHE A 206 -29.98 -140.46 REMARK 500 PHE A 253 57.11 -91.10 REMARK 500 PHE A 253 57.11 -90.86 REMARK 500 ASN A 308 -173.98 -171.95 REMARK 500 ASN A 358 24.12 -147.95 REMARK 500 ASN A 358 24.12 -147.81 REMARK 500 TYR A 463 -116.96 62.37 REMARK 500 PHE A 560 50.92 -103.72 REMARK 500 PHE A 580 -150.51 -107.29 REMARK 500 ASP A 611 56.81 -152.69 REMARK 500 ASP A 669 100.24 78.27 REMARK 500 ASN A 733 91.62 -165.45 REMARK 500 ILE A 746 -32.31 -143.29 REMARK 500 SER A 767 126.64 -38.72 REMARK 500 ASN A 905 95.01 -69.91 REMARK 500 SER A 912 -3.21 116.10 REMARK 500 THR A 941 -162.52 -122.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 7F7Q A 22 984 PDB 7F7Q 7F7Q 22 984 SEQRES 1 A 963 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 963 LEU VAL PRO ARG GLY SER HIS MET GLN GLU GLN THR ALA SEQRES 3 A 963 LYS GLU ASP VAL ALA ASP SER ALA THR SER VAL GLY ALA SEQRES 4 A 963 ILE VAL SER ILE GLU LYS ALA GLU LYS ASN PHE VAL ILE SEQRES 5 A 963 THR TYR ALA SER GLY LYS LYS ALA GLN ILE SER ILE LEU SEQRES 6 A 963 ASN ASP HIS LEU PHE ARG TYR HIS LEU ASP PRO THR GLY SEQRES 7 A 963 LYS PHE GLU GLU TYR PRO THR PRO ASN ASP PRO LYS HIS SEQRES 8 A 963 VAL ALA LYS ILE THR ALA LYS THR MET ALA ASP TYR GLY SEQRES 9 A 963 THR GLN ALA PHE GLU GLN THR ASN VAL THR ASP SER GLY SEQRES 10 A 963 ASN GLN PHE ILE LEU GLU ASN ASN GLY LEU LYS ILE ILE SEQRES 11 A 963 PHE GLU LYS GLU SER ALA LEU MET LYS VAL LEU ASP LYS SEQRES 12 A 963 LYS LYS ASN GLN VAL ILE LEU GLU GLU THR ALA PRO LEU SEQRES 13 A 963 SER PHE LYS ASN ASP LYS ALA THR GLN THR LEU LYS GLN SEQRES 14 A 963 SER SER GLN GLU ASN TYR PHE GLY GLY GLY THR GLN ASN SEQRES 15 A 963 GLY ARG PHE THR HIS LYS GLY THR ALA ILE GLN ILE VAL SEQRES 16 A 963 ASN THR ASN ASN TRP VAL ASP GLY GLY VAL ALA SER PRO SEQRES 17 A 963 ASN PRO PHE TYR TRP SER THR ALA GLY TYR GLY VAL VAL SEQRES 18 A 963 ARG ASN THR TRP LYS PRO GLY ASN TYR ASP PHE GLY SER SEQRES 19 A 963 HIS ASP PRO GLN THR THR THR THR THR HIS GLU GLY THR SEQRES 20 A 963 ASP PHE ASP ALA PHE TYR PHE PHE ASN ASP SER SER ALA SEQRES 21 A 963 GLY ILE LEU LYS ASP TYR TYR GLU LEU THR GLY LYS PRO SEQRES 22 A 963 ALA LEU MET PRO GLU TYR GLY PHE TYR GLU ALA HIS LEU SEQRES 23 A 963 ASN ALA TYR ASN ARG ASP TYR TRP VAL LYS VAL ALA GLU SEQRES 24 A 963 GLY THR ALA GLY ALA VAL LYS PHE GLU ASP GLY ASN PHE SEQRES 25 A 963 TYR LYS GLU TYR GLN PRO GLY ASP LEU GLY ASN LEU ASN SEQRES 26 A 963 GLY THR LEU GLU SER LEU ASN GLY GLU LYS GLU ASN TYR SEQRES 27 A 963 GLN PHE SER ALA ARG ALA VAL ILE ASP ARG TYR LYS LYS SEQRES 28 A 963 ASN ASP MET PRO LEU GLY TRP PHE LEU PRO ASN ASP GLY SEQRES 29 A 963 TYR GLY ALA GLY TYR GLY GLN THR ASP SER LEU ASP GLY SEQRES 30 A 963 ASP VAL GLN ASN LEU LYS GLU PHE THR ASP TYR ALA GLN SEQRES 31 A 963 ALA ASN GLY VAL GLU VAL GLY LEU TRP THR GLN SER ASN SEQRES 32 A 963 LEU HIS PRO ALA ASP PRO LYS ASN PRO LYS LYS GLY GLU SEQRES 33 A 963 ARG ASP ILE ALA LYS GLU VAL SER VAL ALA GLY VAL LYS SEQRES 34 A 963 ALA LEU LYS THR ALA VAL ALA TRP VAL GLY TYR GLY TYR SEQRES 35 A 963 SER PHE GLY LEU ASN GLY VAL GLU ASP ALA ALA ASN VAL SEQRES 36 A 963 PHE VAL LYS GLU THR ASP GLY ALA VAL ARG PRO MET ILE SEQRES 37 A 963 VAL SER LEU ASP GLY TRP ALA GLY THR GLN ARG HIS ALA SEQRES 38 A 963 GLY ILE TRP THR GLY ASP GLN THR GLY GLY GLN TRP GLU SEQRES 39 A 963 TYR ILE ARG PHE HIS ILE PRO THR TYR ILE GLY THR SER SEQRES 40 A 963 LEU SER GLY GLN PRO ASN VAL GLY SER ASP MET ASP GLY SEQRES 41 A 963 ILE PHE GLY GLY LYS ASN LYS GLU VAL ASN ILE ARG ASP SEQRES 42 A 963 PHE GLN TRP LYS THR PHE THR PRO VAL GLN LEU ASN MET SEQRES 43 A 963 ASP GLY TRP GLY SER ASN PRO LYS THR PRO PHE ALA PHE SEQRES 44 A 963 ASP GLN GLU ALA THR ASP LEU ASN ARG ALA TYR LEU LYS SEQRES 45 A 963 LEU LYS SER MET MET MET PRO TYR ASN TYR SER ILE ALA SEQRES 46 A 963 LYS GLU SER VAL ASP GLY LEU PRO MET VAL ARG ALA MET SEQRES 47 A 963 ALA LEU GLU PHE PRO ASN GLU GLY THR ALA TYR THR LYS SEQRES 48 A 963 ASP SER GLN TYR GLN TYR MET TRP GLY PRO ASN LEU LEU SEQRES 49 A 963 VAL ALA PRO ILE TYR ASN GLY ASN GLN ASP GLU ALA GLY SEQRES 50 A 963 ASN SER ILE ARG ASP GLY ILE TYR LEU PRO ASP GLU LYS SEQRES 51 A 963 GLN VAL TRP VAL ASP LEU PHE THR GLY GLU LYS TYR GLN SEQRES 52 A 963 GLY GLY ARG VAL LEU ASN GLY VAL LYS THR PRO LEU TRP SEQRES 53 A 963 LYS VAL PRO VAL PHE VAL LYS ASP GLY SER ILE ILE PRO SEQRES 54 A 963 MET THR ASN PRO ASN ASN ASN PRO LYS GLU ILE GLN ARG SEQRES 55 A 963 ASP GLN ARG SER PHE LEU ILE TYR PRO ASN GLY ALA THR SEQRES 56 A 963 SER PHE ASN MET TYR GLU ASP ASP GLY ILE SER THR SER SEQRES 57 A 963 TYR GLU ALA GLY GLN SER ALA THR THR LYS ILE ASN SER SEQRES 58 A 963 GLN GLY PRO LYS SER ASN GLU LYS GLY ASP LEU THR VAL SEQRES 59 A 963 THR ILE GLU PRO THR LYS GLY SER TYR LYS ASP PHE VAL SEQRES 60 A 963 ASP GLU ARG SER THR THR LEU ASP LEU LEU ALA SER GLU SEQRES 61 A 963 ALA PRO GLU SER VAL THR ALA MET VAL GLY GLY THR GLU SEQRES 62 A 963 VAL THR LEU LYS GLN ALA ALA ASN LYS GLU GLU PHE LEU SEQRES 63 A 963 ALA GLY THR ASN LEU TYR TYR PHE ASP LYS GLU PHE GLN SEQRES 64 A 963 VAL ASN GLN TYR LEU SER GLU ALA SER GLY GLU LYS LEU SEQRES 65 A 963 ASN GLN SER ALA LEU SER VAL LYS LEU ALA LYS GLN SER SEQRES 66 A 963 VAL THR ALA LYS ASP VAL GLN ILE THR VAL LYS GLY PHE SEQRES 67 A 963 ILE ASN LYS GLY THR VAL ASP GLY GLY ASN THR THR VAL SEQRES 68 A 963 ASP ASP GLN LEU THR ILE PRO ALA ASN ILE ALA ILE ASN SEQRES 69 A 963 GLU GLU LYS THR THR PRO SER SER LEU THR LEU GLN TRP SEQRES 70 A 963 ASP GLN VAL THR GLU ALA THR SER TYR GLU VAL GLU ARG SEQRES 71 A 963 ASP GLY THR VAL PHE GLY ASN ILE GLN THR ASN THR ALA SEQRES 72 A 963 THR PHE ASP GLY PHE SER PHE LEU SER GLU HIS THR PHE SEQRES 73 A 963 ARG VAL ARG ALA VAL GLY LYS ASN GLY VAL SER GLU TRP SEQRES 74 A 963 SER GLU PRO ILE LYS GLY LYS THR GLN ASP ASP PRO TYR SEQRES 75 A 963 LYS HET A2G A1001 14 HET NPO A1002 10 HET EDO A1003 8 HET EDO A1004 4 HET EDO A1005 4 HET EDO A1006 4 HET EDO A1007 4 HET EDO A1008 4 HET EDO A1009 4 HET 1PE A1010 16 HET EDO A1011 4 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM NPO P-NITROPHENOL HETNAM EDO 1,2-ETHANEDIOL HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 A2G C8 H15 N O6 FORMUL 3 NPO C6 H5 N O3 FORMUL 4 EDO 8(C2 H6 O2) FORMUL 11 1PE C10 H22 O6 FORMUL 13 HOH *792(H2 O) HELIX 1 AA1 MET A 121 GLY A 125 5 5 HELIX 2 AA2 THR A 126 GLN A 131 1 6 HELIX 3 AA3 PHE A 179 ASN A 181 5 3 HELIX 4 AA4 SER A 279 GLY A 292 1 14 HELIX 5 AA5 PRO A 298 TYR A 303 5 6 HELIX 6 AA6 GLN A 338 LEU A 342 5 5 HELIX 7 AA7 ASN A 358 PHE A 361 5 4 HELIX 8 AA8 SER A 362 ASN A 373 1 12 HELIX 9 AA9 SER A 395 ASN A 413 1 19 HELIX 10 AB1 ASP A 439 VAL A 446 1 8 HELIX 11 AB2 ALA A 455 GLY A 460 1 6 HELIX 12 AB3 TYR A 463 THR A 481 1 19 HELIX 13 AB4 GLY A 497 HIS A 501 5 5 HELIX 14 AB5 TRP A 514 PHE A 519 1 6 HELIX 15 AB6 PHE A 519 SER A 530 1 12 HELIX 16 AB7 ASN A 547 THR A 559 1 13 HELIX 17 AB8 ASP A 581 MET A 598 1 18 HELIX 18 AB9 MET A 598 ASP A 611 1 14 HELIX 19 AC1 ALA A 618 PHE A 623 1 6 HELIX 20 AC2 GLU A 626 GLN A 635 5 10 HELIX 21 AC3 ASN A 717 ILE A 721 5 5 HELIX 22 AC4 THR A 748 GLY A 753 5 6 HELIX 23 AC5 ASN A 822 GLY A 829 1 8 HELIX 24 AC6 ASN A 842 GLY A 850 1 9 HELIX 25 AC7 ASN A 905 THR A 909 5 5 SHEET 1 AA1 8 ILE A 61 LYS A 66 0 SHEET 2 AA1 8 PHE A 71 TYR A 75 -1 O VAL A 72 N GLU A 65 SHEET 3 AA1 8 LYS A 80 ASN A 87 -1 O ALA A 81 N ILE A 73 SHEET 4 AA1 8 LEU A 90 LEU A 95 -1 O ARG A 92 N SER A 84 SHEET 5 AA1 8 PHE A 270 PHE A 276 -1 O PHE A 270 N LEU A 95 SHEET 6 AA1 8 TYR A 239 ARG A 243 -1 N VAL A 242 O PHE A 273 SHEET 7 AA1 8 SER A 228 SER A 235 -1 N SER A 235 O TYR A 239 SHEET 8 AA1 8 TYR A 196 THR A 201 -1 N GLY A 199 O PHE A 232 SHEET 1 AA2 9 ASN A 133 SER A 137 0 SHEET 2 AA2 9 GLN A 140 GLU A 144 -1 O GLU A 144 N ASN A 133 SHEET 3 AA2 9 LEU A 148 GLU A 153 -1 O ILE A 150 N LEU A 143 SHEET 4 AA2 9 MET A 159 ASP A 163 -1 O LYS A 160 N ILE A 151 SHEET 5 AA2 9 VAL A 169 SER A 178 -1 O GLU A 173 N MET A 159 SHEET 6 AA2 9 LYS A 183 LYS A 189 -1 O LYS A 189 N GLU A 172 SHEET 7 AA2 9 THR A 260 GLU A 266 -1 O THR A 261 N LEU A 188 SHEET 8 AA2 9 GLY A 249 ASP A 252 -1 N ASP A 252 O THR A 262 SHEET 9 AA2 9 ALA A 212 ILE A 215 -1 N ILE A 213 O TYR A 251 SHEET 1 AA3 9 ALA A 305 LEU A 307 0 SHEET 2 AA3 9 TRP A 379 LEU A 381 1 O LEU A 381 N HIS A 306 SHEET 3 AA3 9 GLU A 416 THR A 421 1 O GLY A 418 N PHE A 380 SHEET 4 AA3 9 ALA A 451 THR A 454 1 O LYS A 453 N LEU A 419 SHEET 5 AA3 9 ILE A 489 SER A 491 1 O VAL A 490 N LEU A 452 SHEET 6 AA3 9 GLY A 503 TRP A 505 1 O GLY A 503 N SER A 491 SHEET 7 AA3 9 VAL A 535 ASP A 538 1 O GLY A 536 N ILE A 504 SHEET 8 AA3 9 VAL A 563 MET A 567 1 O LEU A 565 N SER A 537 SHEET 9 AA3 9 ALA A 305 LEU A 307 1 N LEU A 307 O ASN A 566 SHEET 1 AA4 4 VAL A 326 LYS A 327 0 SHEET 2 AA4 4 PHE A 333 TYR A 337 -1 O TYR A 334 N VAL A 326 SHEET 3 AA4 4 TYR A 314 VAL A 318 -1 N TYR A 314 O TYR A 337 SHEET 4 AA4 4 THR A 348 LEU A 349 -1 O THR A 348 N TRP A 315 SHEET 1 AA5 2 THR A 510 GLY A 511 0 SHEET 2 AA5 2 PHE A 543 GLY A 544 1 O PHE A 543 N GLY A 511 SHEET 1 AA6 7 VAL A 616 ARG A 617 0 SHEET 2 AA6 7 TYR A 638 TRP A 640 -1 O MET A 639 N ARG A 617 SHEET 3 AA6 7 LEU A 644 VAL A 646 -1 O VAL A 646 N TYR A 638 SHEET 4 AA6 7 VAL A 701 LYS A 704 -1 O PHE A 702 N LEU A 645 SHEET 5 AA6 7 VAL A 673 ASP A 676 -1 N VAL A 675 O VAL A 703 SHEET 6 AA6 7 LYS A 682 GLN A 684 -1 O TYR A 683 N TRP A 674 SHEET 7 AA6 7 VAL A 885 ASP A 886 1 O ASP A 886 N GLN A 684 SHEET 1 AA7 2 SER A 660 ARG A 662 0 SHEET 2 AA7 2 VAL A 692 THR A 694 -1 O THR A 694 N SER A 660 SHEET 1 AA8 5 ILE A 665 LEU A 667 0 SHEET 2 AA8 5 ARG A 687 LEU A 689 -1 O ARG A 687 N LEU A 667 SHEET 3 AA8 5 THR A 934 ILE A 939 1 O GLY A 937 N VAL A 688 SHEET 4 AA8 5 SER A 926 ARG A 931 -1 N VAL A 929 O PHE A 936 SHEET 5 AA8 5 PHE A 957 VAL A 962 -1 O VAL A 962 N SER A 926 SHEET 1 AA9 6 ILE A 708 MET A 711 0 SHEET 2 AA9 6 GLN A 725 ILE A 730 -1 O LEU A 729 N ILE A 709 SHEET 3 AA9 6 GLU A 790 LEU A 798 1 O ASP A 796 N PHE A 728 SHEET 4 AA9 6 GLN A 855 SER A 866 -1 O LEU A 858 N LEU A 797 SHEET 5 AA9 6 LEU A 832 PHE A 839 -1 N ASP A 836 O ALA A 857 SHEET 6 AA9 6 LYS A 818 GLN A 819 1 N LYS A 818 O TYR A 833 SHEET 1 AB1 3 ALA A 735 GLU A 742 0 SHEET 2 AB1 3 SER A 755 GLN A 763 -1 O ILE A 760 N PHE A 738 SHEET 3 AB1 3 LYS A 781 SER A 783 -1 O LYS A 781 N THR A 757 SHEET 1 AB2 6 ALA A 735 GLU A 742 0 SHEET 2 AB2 6 SER A 755 GLN A 763 -1 O ILE A 760 N PHE A 738 SHEET 3 AB2 6 LYS A 770 ILE A 777 -1 O THR A 776 N ASN A 761 SHEET 4 AB2 6 VAL A 872 ILE A 880 -1 O VAL A 876 N LEU A 773 SHEET 5 AB2 6 SER A 805 VAL A 810 -1 N MET A 809 O GLN A 873 SHEET 6 AB2 6 THR A 813 VAL A 815 -1 O THR A 813 N VAL A 810 SHEET 1 AB3 2 LEU A 914 GLN A 917 0 SHEET 2 AB3 2 THR A 943 PHE A 946 -1 O ALA A 944 N LEU A 916 LINK C1 A2G A1001 OH NPO A1002 1555 1555 1.35 CRYST1 81.875 83.394 146.329 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012214 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006834 0.00000