HEADER SUGAR BINDING PROTEIN 04-JUL-21 7F9G TITLE THROMBOCORTICIN IN COMPLEX WITH CA2+ AND FUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOCORTICIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORTICIUM SP. (IN: FUNGI); SOURCE 3 ORGANISM_TAXID: 1935377; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOACTIVE PROTEIN, THROMBOCORTICIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.KAGEYAMA,K.ONODERA,R.SAKAI,Y.TANAKA REVDAT 3 29-NOV-23 7F9G 1 REMARK REVDAT 2 19-JUL-23 7F9G 1 JRNL REMARK REVDAT 1 06-JUL-22 7F9G 0 JRNL AUTH H.WATARI,H.KAGEYAMA,N.MASUBUCHI,H.NAKAJIMA,K.ONODERA, JRNL AUTH 2 P.J.FOCIA,T.OSHIRO,T.MATSUI,Y.KODERA,T.OGAWA,T.YOKOYAMA, JRNL AUTH 3 M.HIRAYAMA,K.HORI,D.M.FREYMANN,M.IMAI,N.KOMATSU,M.ARAKI, JRNL AUTH 4 Y.TANAKA,R.SAKAI JRNL TITL A MARINE SPONGE-DERIVED LECTIN REVEALS HIDDEN PATHWAY FOR JRNL TITL 2 THROMBOPOIETIN RECEPTOR ACTIVATION. JRNL REF NAT COMMUN V. 13 7262 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36433967 JRNL DOI 10.1038/S41467-022-34921-2 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4280 - 3.0467 1.00 4036 141 0.1504 0.1493 REMARK 3 2 3.0467 - 2.4186 1.00 3865 143 0.1630 0.1578 REMARK 3 3 2.4186 - 2.1129 1.00 3823 135 0.1493 0.1602 REMARK 3 4 2.1129 - 1.9198 1.00 3804 140 0.1413 0.1570 REMARK 3 5 1.9198 - 1.7822 1.00 3776 135 0.1548 0.1605 REMARK 3 6 1.7822 - 1.6771 1.00 3789 130 0.1510 0.1888 REMARK 3 7 1.6771 - 1.5931 1.00 3732 144 0.1504 0.1921 REMARK 3 8 1.5931 - 1.5238 1.00 3773 134 0.1537 0.1861 REMARK 3 9 1.5238 - 1.4651 1.00 3744 139 0.1613 0.1821 REMARK 3 10 1.4651 - 1.4146 1.00 3748 124 0.1615 0.1992 REMARK 3 11 1.4146 - 1.3703 1.00 3725 137 0.1741 0.1985 REMARK 3 12 1.3703 - 1.3312 0.98 3631 140 0.2060 0.2370 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2076 REMARK 3 ANGLE : 0.925 2851 REMARK 3 CHIRALITY : 0.087 334 REMARK 3 PLANARITY : 0.005 388 REMARK 3 DIHEDRAL : 16.942 761 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7F9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 41.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 26.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7F9F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PEG 3350, PEG 400, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.76000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.76000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH B 330 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 350 O HOH B 430 3645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 21 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 78 61.27 33.59 REMARK 500 THR A 82 58.56 32.58 REMARK 500 SER B 78 60.78 32.22 REMARK 500 THR B 82 53.80 35.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 456 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 466 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 6.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 26 O REMARK 620 2 ASP A 118 OD2 157.4 REMARK 620 3 ASN A 120 OD1 86.8 77.6 REMARK 620 4 ASP A 121 OD1 83.5 111.8 87.5 REMARK 620 5 FUC A 201 O3 129.8 71.8 136.1 75.9 REMARK 620 6 FUC A 201 O4 75.0 115.5 157.9 102.5 65.9 REMARK 620 7 GLY B 132 OXT 85.4 77.5 86.6 167.6 115.6 79.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 108 OD1 REMARK 620 2 ASP A 116 OD1 88.1 REMARK 620 3 ASP A 118 OD1 77.5 76.7 REMARK 620 4 ASP A 121 OD1 116.6 134.7 73.1 REMARK 620 5 ASP A 121 OD2 81.4 167.7 94.6 47.6 REMARK 620 6 FUC A 201 O2 138.9 117.3 136.8 69.2 75.0 REMARK 620 7 FUC A 201 O3 156.2 77.0 81.1 65.8 110.7 64.9 REMARK 620 8 HOH A 374 O 74.4 90.9 149.6 130.7 92.5 73.6 123.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 132 OXT REMARK 620 2 GLN B 26 O 91.3 REMARK 620 3 ASP B 118 OD2 81.5 169.5 REMARK 620 4 ASN B 120 OD1 86.5 100.1 72.0 REMARK 620 5 ASP B 121 OD1 175.3 85.3 101.5 90.9 REMARK 620 6 FUC B 201 O3 109.4 125.4 64.6 130.1 75.2 REMARK 620 7 FUC B 201 O4 80.1 73.6 112.2 165.0 101.9 61.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 108 OD1 REMARK 620 2 ASP B 116 OD2 90.2 REMARK 620 3 ASP B 118 OD1 76.6 83.6 REMARK 620 4 ASP B 121 OD1 124.4 135.8 79.5 REMARK 620 5 ASP B 121 OD2 86.6 176.6 96.8 47.6 REMARK 620 6 FUC B 201 O2 136.4 106.6 143.7 68.9 75.0 REMARK 620 7 FUC B 201 O3 156.9 72.0 86.6 66.4 111.4 64.9 REMARK 620 8 HOH B 354 O 72.3 84.2 146.4 129.1 93.6 69.9 118.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7F91 RELATED DB: PDB REMARK 900 SEMET SUBSTITUTED DERIVATIVE OF THIS PROTEIN REMARK 900 RELATED ID: 7F9F RELATED DB: PDB REMARK 900 THIS PROTEIN PURIFIED FROM NATURAL SOURCE DBREF 7F9G A -7 132 PDB 7F9G 7F9G -7 132 DBREF 7F9G B -7 132 PDB 7F9G 7F9G -7 132 SEQRES 1 A 140 MET GLY HIS HIS HIS HIS HIS HIS MET THR ALA CYS THR SEQRES 2 A 140 THR GLY PRO GLN THR ILE SER PHE PRO ALA GLY LEU ILE SEQRES 3 A 140 VAL SER LEU ASN ALA SER VAL GLN SER SER ARG ASN GLU SEQRES 4 A 140 SER VAL GLU VAL LYS ASP SER ASN GLY ASN THR VAL SER SEQRES 5 A 140 ARG GLY SER GLY SER SER SER SER GLY GLY THR PHE THR SEQRES 6 A 140 VAL ILE ASN MET GLU PRO PRO THR PHE ILE SER ASP GLY SEQRES 7 A 140 ASN ASP TYR THR VAL GLU LEU SER PRO GLN ALA THR PRO SEQRES 8 A 140 GLY ILE LEU GLN THR GLU SER SER ARG VAL ASP ASN GLY SEQRES 9 A 140 ARG LEU ILE TRP GLN ASN TYR ALA PHE GLY ALA ASN ASP SEQRES 10 A 140 GLY GLY CYS ILE VAL GLY ASP ARG ASP PHE ASN ASP VAL SEQRES 11 A 140 PHE VAL LEU ILE THR GLY LEU VAL ARG GLY SEQRES 1 B 140 MET GLY HIS HIS HIS HIS HIS HIS MET THR ALA CYS THR SEQRES 2 B 140 THR GLY PRO GLN THR ILE SER PHE PRO ALA GLY LEU ILE SEQRES 3 B 140 VAL SER LEU ASN ALA SER VAL GLN SER SER ARG ASN GLU SEQRES 4 B 140 SER VAL GLU VAL LYS ASP SER ASN GLY ASN THR VAL SER SEQRES 5 B 140 ARG GLY SER GLY SER SER SER SER GLY GLY THR PHE THR SEQRES 6 B 140 VAL ILE ASN MET GLU PRO PRO THR PHE ILE SER ASP GLY SEQRES 7 B 140 ASN ASP TYR THR VAL GLU LEU SER PRO GLN ALA THR PRO SEQRES 8 B 140 GLY ILE LEU GLN THR GLU SER SER ARG VAL ASP ASN GLY SEQRES 9 B 140 ARG LEU ILE TRP GLN ASN TYR ALA PHE GLY ALA ASN ASP SEQRES 10 B 140 GLY GLY CYS ILE VAL GLY ASP ARG ASP PHE ASN ASP VAL SEQRES 11 B 140 PHE VAL LEU ILE THR GLY LEU VAL ARG GLY HET FUC A 201 11 HET CA A 202 1 HET CA A 203 1 HET FUC B 201 11 HET CA B 202 1 HET CA B 203 1 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 CA 4(CA 2+) FORMUL 9 HOH *323(H2 O) HELIX 1 AA1 PRO A 79 THR A 82 5 4 HELIX 2 AA2 PRO B 79 THR B 82 5 4 SHEET 1 AA1 4 GLN A 9 ILE A 11 0 SHEET 2 AA1 4 TYR A 73 LEU A 77 -1 O VAL A 75 N GLN A 9 SHEET 3 AA1 4 GLU A 31 LYS A 36 -1 N GLU A 34 O GLU A 76 SHEET 4 AA1 4 THR A 42 GLY A 48 -1 O SER A 44 N VAL A 35 SHEET 1 AA2 3 THR A 57 ILE A 59 0 SHEET 2 AA2 3 ILE A 18 VAL A 25 -1 N VAL A 25 O THR A 57 SHEET 3 AA2 3 THR A 65 ILE A 67 -1 O PHE A 66 N VAL A 19 SHEET 1 AA3 5 THR A 57 ILE A 59 0 SHEET 2 AA3 5 ILE A 18 VAL A 25 -1 N VAL A 25 O THR A 57 SHEET 3 AA3 5 VAL A 122 LEU A 129 -1 O LEU A 129 N ILE A 18 SHEET 4 AA3 5 ARG A 97 ASN A 108 -1 N GLN A 101 O GLY A 128 SHEET 5 AA3 5 GLY A 84 ASP A 94 -1 N SER A 90 O ASN A 102 SHEET 1 AA4 4 GLN B 9 ILE B 11 0 SHEET 2 AA4 4 TYR B 73 LEU B 77 -1 O VAL B 75 N GLN B 9 SHEET 3 AA4 4 GLU B 31 LYS B 36 -1 N GLU B 34 O GLU B 76 SHEET 4 AA4 4 THR B 42 GLY B 48 -1 O VAL B 43 N VAL B 35 SHEET 1 AA5 3 THR B 57 ILE B 59 0 SHEET 2 AA5 3 ILE B 18 VAL B 25 -1 N VAL B 25 O THR B 57 SHEET 3 AA5 3 THR B 65 ILE B 67 -1 O PHE B 66 N VAL B 19 SHEET 1 AA6 5 THR B 57 ILE B 59 0 SHEET 2 AA6 5 ILE B 18 VAL B 25 -1 N VAL B 25 O THR B 57 SHEET 3 AA6 5 VAL B 122 LEU B 129 -1 O PHE B 123 N SER B 24 SHEET 4 AA6 5 ARG B 97 ASN B 108 -1 N ALA B 107 O VAL B 122 SHEET 5 AA6 5 GLY B 84 ASP B 94 -1 N SER B 90 O ASN B 102 SSBOND 1 CYS A 4 CYS A 112 1555 1555 2.03 SSBOND 2 CYS B 4 CYS B 112 1555 1555 2.04 LINK O GLN A 26 CA CA A 202 1555 1555 2.36 LINK OD1 ASN A 108 CA CA A 203 1555 1555 2.52 LINK OD1 ASP A 116 CA CA A 203 1555 1555 2.44 LINK OD2 ASP A 118 CA CA A 202 1555 1555 2.40 LINK OD1 ASP A 118 CA CA A 203 1555 1555 2.39 LINK OD1 ASN A 120 CA CA A 202 1555 1555 2.35 LINK OD1 ASP A 121 CA CA A 202 1555 1555 2.29 LINK OD1 ASP A 121 CA CA A 203 1555 1555 2.95 LINK OD2 ASP A 121 CA CA A 203 1555 1555 2.39 LINK OXT GLY A 132 CA CA B 202 1555 1555 2.37 LINK O3 FUC A 201 CA CA A 202 1555 1555 2.55 LINK O4 FUC A 201 CA CA A 202 1555 1555 2.45 LINK O2 FUC A 201 CA CA A 203 1555 1555 2.64 LINK O3 FUC A 201 CA CA A 203 1555 1555 2.50 LINK CA CA A 202 OXT GLY B 132 1555 1555 2.41 LINK CA CA A 203 O HOH A 374 1555 1555 2.43 LINK O GLN B 26 CA CA B 202 1555 1555 2.40 LINK OD1 ASN B 108 CA CA B 203 1555 1555 2.67 LINK OD2 ASP B 116 CA CA B 203 1555 1555 2.30 LINK OD2BASP B 118 CA CA B 202 1555 1555 2.48 LINK OD1BASP B 118 CA CA B 203 1555 1555 2.44 LINK OD1 ASN B 120 CA CA B 202 1555 1555 2.36 LINK OD1 ASP B 121 CA CA B 202 1555 1555 2.31 LINK OD1 ASP B 121 CA CA B 203 1555 1555 2.94 LINK OD2 ASP B 121 CA CA B 203 1555 1555 2.31 LINK O3 FUC B 201 CA CA B 202 1555 1555 2.70 LINK O4 FUC B 201 CA CA B 202 1555 1555 2.53 LINK O2 FUC B 201 CA CA B 203 1555 1555 2.59 LINK O3 FUC B 201 CA CA B 203 1555 1555 2.65 LINK CA CA B 203 O HOH B 354 1555 1555 2.42 CISPEP 1 GLU A 62 PRO A 63 0 -10.09 CISPEP 2 GLU B 62 PRO B 63 0 -12.32 CRYST1 41.520 44.720 108.580 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009210 0.00000