HEADER DE NOVO PROTEIN 08-JUL-21 7FBA TITLE DE NOVO-DESIGNED AND DISULFIDE-BRIDGED PEPTIDE HETERODIMER - HD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLU-CYS-ARG-GLU-TYR-GLY-PRO-LE1-LYS-LE1-LE1-ALA-NH2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-LE1-CYS-GLU-CYS-GLY-PRO-THR-ARG-GLU-CYS-LYS-NH2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA VIRUS M13; SOURCE 4 ORGANISM_TAXID: 1977402; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA VIRUS M13; SOURCE 8 ORGANISM_TAXID: 1977402 KEYWDS DE NOVO DESIGN, DISULFIDE-BRIDGED PEPTIDE, HETERODIMER, KEYWDS 2 PENICILLAMINE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.YAO,S.YAO,A.MOYER,Y.ZHENG,D.BAKER,C.WU REVDAT 3 15-NOV-23 7FBA 1 ATOM REVDAT 2 22-JUN-22 7FBA 1 REMARK REVDAT 1 18-MAY-22 7FBA 0 JRNL AUTH S.YAO,A.MOYER,Y.ZHENG,Y.SHEN,X.MENG,C.YUAN,Y.ZHAO,H.YAO, JRNL AUTH 2 D.BAKER,C.WU JRNL TITL DE NOVO DESIGN AND DIRECTED FOLDING OF DISULFIDE-BRIDGED JRNL TITL 2 PEPTIDE HETERODIMERS. JRNL REF NAT COMMUN V. 13 1539 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35318337 JRNL DOI 10.1038/S41467-022-29210-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.ZHENG,L.ZHAI,Y.ZHAO,C.WU REMARK 1 TITL ORTHOGONAL CYSTEINE-PENICILLAMINE DISULFIDE PAIRING FOR REMARK 1 TITL 2 DIRECTING THE OXIDATIVE FOLDING OF PEPTIDES. REMARK 1 REF J AM CHEM SOC V. 137 15094 2015 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 26588670 REMARK 1 DOI 10.1021/JACS.5B10779 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023210. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM HD2, 50% H2O/50% CD3CN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 12 PRO B 7 32.95 -83.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36429 RELATED DB: BMRB REMARK 900 DE NOVO-DESIGNED AND DISULFIDE-BRIDGED PEPTIDE HETERODIMER - HD2. DBREF 7FBA A 1 13 PDB 7FBA 7FBA 1 13 DBREF 7FBA B 1 13 PDB 7FBA 7FBA 1 13 SEQRES 1 A 13 GLU CYS ARG GLU TYR GLY PRO LE1 LYS LE1 LE1 ALA NH2 SEQRES 1 B 13 ALA LE1 CYS GLU CYS GLY PRO THR ARG GLU CYS LYS NH2 HET LE1 A 8 16 HET LE1 A 10 16 HET LE1 A 11 16 HET NH2 A 13 3 HET LE1 B 2 16 HET NH2 B 13 3 HETNAM LE1 3-SULFANYL-L-VALINE HETNAM NH2 AMINO GROUP HETSYN LE1 L-LE1ICILLAMINE; L-PENICILLAMINE FORMUL 1 LE1 4(C5 H11 N O2 S) FORMUL 1 NH2 2(H2 N) SHEET 1 AA1 4 CYS A 2 TYR A 5 0 SHEET 2 AA1 4 LE1 A 8 LE1 A 11 -1 O LE1 A 10 N ARG A 3 SHEET 3 AA1 4 LE1 B 2 CYS B 5 -1 O GLU B 4 N LYS A 9 SHEET 4 AA1 4 THR B 8 CYS B 11 -1 O GLU B 10 N CYS B 3 SSBOND 1 CYS A 2 LE1 A 11 1555 1555 2.02 SSBOND 2 LE1 A 8 CYS B 5 1555 1555 2.02 SSBOND 3 LE1 A 10 CYS B 3 1555 1555 2.02 SSBOND 4 LE1 B 2 CYS B 11 1555 1555 2.02 LINK C PRO A 7 N LE1 A 8 1555 1555 1.33 LINK C LE1 A 8 N LYS A 9 1555 1555 1.33 LINK C LYS A 9 N LE1 A 10 1555 1555 1.33 LINK C LE1 A 10 N LE1 A 11 1555 1555 1.33 LINK C LE1 A 11 N ALA A 12 1555 1555 1.33 LINK C ALA A 12 N NH2 A 13 1555 1555 1.31 LINK C ALA B 1 N LE1 B 2 1555 1555 1.33 LINK C LE1 B 2 N CYS B 3 1555 1555 1.33 LINK C LYS B 12 N NH2 B 13 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1