HEADER UNKNOWN FUNCTION 09-JUL-21 7FBD TITLE DE NOVO DESIGN PROTEIN D53 WITH MBP TAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTODEXTRIN-BINDING PROTEIN,DE NOVO DESIGN PROTEIN D53; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA SP. (STRAIN FS14), SYNTHETIC SOURCE 3 CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 1327989, 32630; SOURCE 5 STRAIN: FS14; SOURCE 6 GENE: MALE, JW3994; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DE NOVO PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.BIN REVDAT 4 02-MAR-22 7FBD 1 JRNL REVDAT 3 23-FEB-22 7FBD 1 JRNL REVDAT 2 16-FEB-22 7FBD 1 JRNL REVDAT 1 22-DEC-21 7FBD 0 JRNL AUTH B.HUANG,Y.XU,X.HU,Y.LIU,S.LIAO,J.ZHANG,C.HUANG,J.HONG, JRNL AUTH 2 Q.CHEN,H.LIU JRNL TITL A BACKBONE-CENTRED ENERGY FUNCTION OF NEURAL NETWORKS FOR JRNL TITL 2 PROTEIN DESIGN. JRNL REF NATURE V. 602 523 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 35140398 JRNL DOI 10.1038/S41586-021-04383-5 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.0810 - 6.1339 1.00 2668 143 0.1703 0.1749 REMARK 3 2 6.1339 - 4.9551 1.00 2609 141 0.2101 0.2285 REMARK 3 3 4.9551 - 4.3551 1.00 2598 136 0.1796 0.2683 REMARK 3 4 4.3551 - 3.9692 1.00 2595 121 0.2043 0.2526 REMARK 3 5 3.9692 - 3.6915 1.00 2607 117 0.2376 0.3023 REMARK 3 6 3.6915 - 3.4782 1.00 2574 139 0.2494 0.2898 REMARK 3 7 3.4782 - 3.3070 1.00 2560 131 0.2609 0.3098 REMARK 3 8 3.3070 - 3.1651 1.00 2539 148 0.2623 0.3339 REMARK 3 9 3.1651 - 3.0449 1.00 2577 126 0.2689 0.3242 REMARK 3 10 3.0449 - 2.9410 1.00 2545 145 0.2936 0.3527 REMARK 3 11 2.9410 - 2.8500 1.00 2576 135 0.3127 0.3719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6901 REMARK 3 ANGLE : 0.970 9388 REMARK 3 CHIRALITY : 0.057 1039 REMARK 3 PLANARITY : 0.007 1224 REMARK 3 DIHEDRAL : 18.721 4106 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 445) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9132 11.5497 84.7593 REMARK 3 T TENSOR REMARK 3 T11: 0.3063 T22: 0.6546 REMARK 3 T33: 0.3677 T12: -0.2622 REMARK 3 T13: 0.0326 T23: -0.1054 REMARK 3 L TENSOR REMARK 3 L11: 0.5952 L22: 0.5535 REMARK 3 L33: 1.4460 L12: -0.0149 REMARK 3 L13: 0.2346 L23: 0.5357 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0375 S13: 0.1736 REMARK 3 S21: 0.0374 S22: -0.1884 S23: 0.2935 REMARK 3 S31: 0.0670 S32: -0.7295 S33: 0.1704 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 451) REMARK 3 ORIGIN FOR THE GROUP (A): 76.5952 14.6759 55.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.1719 REMARK 3 T33: 0.2157 T12: -0.0439 REMARK 3 T13: -0.0145 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.1012 L22: 0.8988 REMARK 3 L33: 0.8772 L12: 0.3957 REMARK 3 L13: 0.1407 L23: 0.2455 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.2218 S13: 0.0477 REMARK 3 S21: 0.1324 S22: 0.0980 S23: -0.1230 REMARK 3 S31: 0.2088 S32: -0.0111 S33: -0.0354 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 7FBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5406 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALA 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.605 REMARK 200 RESOLUTION RANGE LOW (A) : 89.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.80 REMARK 200 R MERGE (I) : 0.50600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 1.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2M SODIUM MALONATE PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 79.23450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.74606 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 88.73133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 79.23450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.74606 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 88.73133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 79.23450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.74606 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 88.73133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 79.23450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.74606 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 88.73133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 79.23450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.74606 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 88.73133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 79.23450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.74606 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 88.73133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.49212 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 177.46267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 91.49212 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 177.46267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 91.49212 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 177.46267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 91.49212 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 177.46267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 91.49212 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 177.46267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 91.49212 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 177.46267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 446 REMARK 465 GLU B 447 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ILE B 34 CG1 CG2 CD1 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LEU B 44 CG CD1 CD2 REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 ILE B 105 CG1 CG2 CD1 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 LYS B 314 CG CD CE NZ REMARK 470 GLN B 366 CG CD OE1 NE2 REMARK 470 LYS B 383 CG CD CE NZ REMARK 470 ARG B 443 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 LEU A 446 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 185 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 109 -63.53 -121.07 REMARK 500 TYR B 284 -61.51 -125.48 REMARK 500 ILE A 109 -57.89 -120.40 REMARK 500 ALA A 169 -71.74 -72.89 REMARK 500 TYR A 284 -58.90 -126.63 REMARK 500 ALA A 372 -119.49 45.46 REMARK 500 ALA A 373 88.35 68.53 REMARK 500 ALA A 374 -84.78 -96.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 371 ALA A 372 148.15 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7FBD B 2 370 UNP A0A4P1LXE0_SERSF DBREF2 7FBD B A0A4P1LXE0 3 371 DBREF 7FBD B 371 451 PDB 7FBD 7FBD 371 451 DBREF1 7FBD A 2 370 UNP A0A4P1LXE0_SERSF DBREF2 7FBD A A0A4P1LXE0 3 371 DBREF 7FBD A 371 451 PDB 7FBD 7FBD 371 451 SEQADV 7FBD ALA B 83 UNP A0A4P1LXE ASP 84 ENGINEERED MUTATION SEQADV 7FBD ALA B 84 UNP A0A4P1LXE LYS 85 ENGINEERED MUTATION SEQADV 7FBD ALA B 173 UNP A0A4P1LXE GLU 174 ENGINEERED MUTATION SEQADV 7FBD ALA B 174 UNP A0A4P1LXE ASN 175 ENGINEERED MUTATION SEQADV 7FBD ALA B 240 UNP A0A4P1LXE LYS 241 ENGINEERED MUTATION SEQADV 7FBD ALA B 360 UNP A0A4P1LXE GLU 361 ENGINEERED MUTATION SEQADV 7FBD ALA B 363 UNP A0A4P1LXE LYS 364 ENGINEERED MUTATION SEQADV 7FBD ALA B 364 UNP A0A4P1LXE ASP 365 ENGINEERED MUTATION SEQADV 7FBD ALA A 83 UNP A0A4P1LXE ASP 84 ENGINEERED MUTATION SEQADV 7FBD ALA A 84 UNP A0A4P1LXE LYS 85 ENGINEERED MUTATION SEQADV 7FBD ALA A 173 UNP A0A4P1LXE GLU 174 ENGINEERED MUTATION SEQADV 7FBD ALA A 174 UNP A0A4P1LXE ASN 175 ENGINEERED MUTATION SEQADV 7FBD ALA A 240 UNP A0A4P1LXE LYS 241 ENGINEERED MUTATION SEQADV 7FBD ALA A 360 UNP A0A4P1LXE GLU 361 ENGINEERED MUTATION SEQADV 7FBD ALA A 363 UNP A0A4P1LXE LYS 364 ENGINEERED MUTATION SEQADV 7FBD ALA A 364 UNP A0A4P1LXE ASP 365 ENGINEERED MUTATION SEQRES 1 B 450 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 B 450 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 B 450 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 B 450 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 B 450 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 B 450 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 B 450 ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 B 450 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 B 450 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 B 450 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 B 450 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 B 450 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 B 450 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 B 450 LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 B 450 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 B 450 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 B 450 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 B 450 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 B 450 ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 B 450 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 B 450 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 B 450 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 B 450 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 B 450 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 B 450 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 B 450 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 B 450 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 B 450 SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA ALA SEQRES 29 B 450 GLN THR ASN ALA ALA ARG ALA ALA ALA ILE ASP ILE LEU SEQRES 30 B 450 ILE LYS ILE ALA LYS ALA LEU GLY ILE SER ASP ARG ALA SEQRES 31 B 450 ALA LYS ILE LEU ALA GLU ALA ALA LYS ALA ALA GLY ILE SEQRES 32 B 450 THR SER ALA GLU GLY ALA LEU ARG LEU ALA ASN GLY GLU SEQRES 33 B 450 TYR PRO GLU ALA TRP LYS TYR ALA ILE GLU LEU ALA LYS SEQRES 34 B 450 LYS ARG GLY ASP ASP ALA ALA LEU ALA ALA LEU ARG ARG SEQRES 35 B 450 ALA PHE LEU GLU HIS HIS HIS HIS SEQRES 1 A 450 LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN GLY SEQRES 2 A 450 ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS LYS SEQRES 3 A 450 PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU HIS SEQRES 4 A 450 PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA ALA SEQRES 5 A 450 THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS ASP SEQRES 6 A 450 ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA GLU SEQRES 7 A 450 ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR PRO SEQRES 8 A 450 PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU ILE SEQRES 9 A 450 ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE TYR SEQRES 10 A 450 ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP GLU SEQRES 11 A 450 GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS GLY SEQRES 12 A 450 LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR PHE SEQRES 13 A 450 THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA PHE SEQRES 14 A 450 LYS TYR ALA ALA GLY LYS TYR ASP ILE LYS ASP VAL GLY SEQRES 15 A 450 VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE LEU SEQRES 16 A 450 VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP THR SEQRES 17 A 450 ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY GLU SEQRES 18 A 450 THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER ASN SEQRES 19 A 450 ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL LEU SEQRES 20 A 450 PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL GLY SEQRES 21 A 450 VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN LYS SEQRES 22 A 450 GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU THR SEQRES 23 A 450 ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO LEU SEQRES 24 A 450 GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU ALA SEQRES 25 A 450 LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA GLN SEQRES 26 A 450 LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER ALA SEQRES 27 A 450 PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA ALA SEQRES 28 A 450 SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA ALA SEQRES 29 A 450 GLN THR ASN ALA ALA ARG ALA ALA ALA ILE ASP ILE LEU SEQRES 30 A 450 ILE LYS ILE ALA LYS ALA LEU GLY ILE SER ASP ARG ALA SEQRES 31 A 450 ALA LYS ILE LEU ALA GLU ALA ALA LYS ALA ALA GLY ILE SEQRES 32 A 450 THR SER ALA GLU GLY ALA LEU ARG LEU ALA ASN GLY GLU SEQRES 33 A 450 TYR PRO GLU ALA TRP LYS TYR ALA ILE GLU LEU ALA LYS SEQRES 34 A 450 LYS ARG GLY ASP ASP ALA ALA LEU ALA ALA LEU ARG ARG SEQRES 35 A 450 ALA PHE LEU GLU HIS HIS HIS HIS HELIX 1 AA1 GLY B 17 THR B 32 1 16 HELIX 2 AA2 LYS B 43 ALA B 52 1 10 HELIX 3 AA3 ALA B 53 GLY B 55 5 3 HELIX 4 AA4 ARG B 67 SER B 74 1 8 HELIX 5 AA5 ALA B 83 ASP B 88 1 6 HELIX 6 AA6 TYR B 91 VAL B 98 1 8 HELIX 7 AA7 THR B 129 GLU B 131 5 3 HELIX 8 AA8 GLU B 132 LYS B 143 1 12 HELIX 9 AA9 GLU B 154 ASP B 165 1 12 HELIX 10 AB1 ASN B 186 ASN B 202 1 17 HELIX 11 AB2 ASP B 210 GLY B 221 1 12 HELIX 12 AB3 GLY B 229 SER B 239 1 11 HELIX 13 AB4 ASN B 273 TYR B 284 1 12 HELIX 14 AB5 THR B 287 LYS B 298 1 12 HELIX 15 AB6 LEU B 305 ALA B 313 1 9 HELIX 16 AB7 ASP B 315 GLY B 328 1 14 HELIX 17 AB8 PRO B 335 SER B 353 1 19 HELIX 18 AB9 THR B 357 ASN B 368 1 12 HELIX 19 AC1 ALA B 372 GLY B 386 1 15 HELIX 20 AC2 SER B 388 GLY B 403 1 16 HELIX 21 AC3 SER B 406 ASN B 415 1 10 HELIX 22 AC4 TYR B 418 ARG B 432 1 15 HELIX 23 AC5 ASP B 434 PHE B 445 1 12 HELIX 24 AC6 GLY A 17 GLY A 33 1 17 HELIX 25 AC7 LYS A 43 THR A 54 1 12 HELIX 26 AC8 ASP A 66 SER A 74 1 9 HELIX 27 AC9 ALA A 83 ASP A 88 1 6 HELIX 28 AD1 TYR A 91 VAL A 98 1 8 HELIX 29 AD2 THR A 129 GLU A 131 5 3 HELIX 30 AD3 GLU A 132 LYS A 143 1 12 HELIX 31 AD4 GLU A 154 ASP A 165 1 12 HELIX 32 AD5 ASN A 186 ASN A 202 1 17 HELIX 33 AD6 ASP A 210 LYS A 220 1 11 HELIX 34 AD7 GLY A 229 TRP A 231 5 3 HELIX 35 AD8 ALA A 232 SER A 239 1 8 HELIX 36 AD9 ASN A 273 TYR A 284 1 12 HELIX 37 AE1 THR A 287 LYS A 298 1 12 HELIX 38 AE2 LEU A 305 ALA A 313 1 9 HELIX 39 AE3 ASP A 315 GLY A 328 1 14 HELIX 40 AE4 GLN A 336 SER A 353 1 18 HELIX 41 AE5 THR A 357 ARG A 371 1 15 HELIX 42 AE6 ASP A 376 LEU A 385 1 10 HELIX 43 AE7 SER A 388 ALA A 402 1 15 HELIX 44 AE8 SER A 406 ASN A 415 1 10 HELIX 45 AE9 TYR A 418 GLY A 433 1 16 HELIX 46 AF1 ASP A 434 PHE A 445 1 12 SHEET 1 AA1 6 LYS B 35 GLU B 39 0 SHEET 2 AA1 6 LYS B 7 TRP B 11 1 N ILE B 10 O THR B 37 SHEET 3 AA1 6 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 AA1 6 PHE B 259 ILE B 267 -1 O GLY B 266 N ILE B 61 SHEET 5 AA1 6 ALA B 106 GLU B 112 -1 N ILE B 109 O LEU B 263 SHEET 6 AA1 6 ALA B 302 VAL B 303 -1 O ALA B 302 N VAL B 111 SHEET 1 AA2 5 LYS B 35 GLU B 39 0 SHEET 2 AA2 5 LYS B 7 TRP B 11 1 N ILE B 10 O THR B 37 SHEET 3 AA2 5 ILE B 60 ALA B 64 1 O PHE B 62 N TRP B 11 SHEET 4 AA2 5 PHE B 259 ILE B 267 -1 O GLY B 266 N ILE B 61 SHEET 5 AA2 5 GLU B 329 ILE B 330 1 O GLU B 329 N VAL B 260 SHEET 1 AA3 2 ARG B 99 TYR B 100 0 SHEET 2 AA3 2 LYS B 103 LEU B 104 -1 O LYS B 103 N TYR B 100 SHEET 1 AA4 4 SER B 146 LEU B 148 0 SHEET 2 AA4 4 THR B 223 ASN B 228 1 O ALA B 224 N SER B 146 SHEET 3 AA4 4 SER B 115 ASN B 119 -1 N ILE B 117 O THR B 226 SHEET 4 AA4 4 TYR B 243 THR B 246 -1 O GLY B 244 N TYR B 118 SHEET 1 AA5 2 TYR B 168 ALA B 173 0 SHEET 2 AA5 2 LYS B 176 GLY B 183 -1 O LYS B 176 N ALA B 173 SHEET 1 AA6 2 THR B 250 PHE B 251 0 SHEET 2 AA6 2 GLN B 254 PRO B 255 -1 O GLN B 254 N PHE B 251 SHEET 1 AA7 6 VAL A 36 GLU A 39 0 SHEET 2 AA7 6 LEU A 8 TRP A 11 1 N LEU A 8 O THR A 37 SHEET 3 AA7 6 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 4 AA7 6 PHE A 259 ILE A 267 -1 O SER A 264 N TRP A 63 SHEET 5 AA7 6 ALA A 106 GLU A 112 -1 N ILE A 109 O LEU A 263 SHEET 6 AA7 6 ALA A 302 VAL A 303 -1 O ALA A 302 N VAL A 111 SHEET 1 AA8 5 VAL A 36 GLU A 39 0 SHEET 2 AA8 5 LEU A 8 TRP A 11 1 N LEU A 8 O THR A 37 SHEET 3 AA8 5 ILE A 60 ALA A 64 1 O PHE A 62 N TRP A 11 SHEET 4 AA8 5 PHE A 259 ILE A 267 -1 O SER A 264 N TRP A 63 SHEET 5 AA8 5 GLU A 329 ILE A 330 1 O GLU A 329 N VAL A 260 SHEET 1 AA9 2 ARG A 99 TYR A 100 0 SHEET 2 AA9 2 LYS A 103 LEU A 104 -1 O LYS A 103 N TYR A 100 SHEET 1 AB1 3 MET A 225 ASN A 228 0 SHEET 2 AB1 3 SER A 115 ASN A 119 -1 N ILE A 117 O THR A 226 SHEET 3 AB1 3 TYR A 243 THR A 246 -1 O THR A 246 N LEU A 116 SHEET 1 AB2 2 TYR A 168 ALA A 173 0 SHEET 2 AB2 2 LYS A 176 GLY A 183 -1 O ASP A 178 N LYS A 171 SHEET 1 AB3 2 THR A 250 PHE A 251 0 SHEET 2 AB3 2 GLN A 254 PRO A 255 -1 O GLN A 254 N PHE A 251 CRYST1 158.469 158.469 266.194 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006310 0.003643 0.000000 0.00000 SCALE2 0.000000 0.007287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003757 0.00000