HEADER IMMUNE SYSTEM/INHIBITOR 15-JUL-21 7FCZ TITLE CRYSTAL STRUCTURE OF HUMAN RIPK1 KINASE DOMAIN IN COMPLEX WITH A NOVEL TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DEATH PROTEIN RIP,RECEPTOR-INTERACTING PROTEIN 1,RIP-1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK1, RIP, RIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS IMMUNE SYSTEM-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.X.SU,H.XIE,T.Q.NIE,M.J.LI,Y.C.XU REVDAT 4 29-NOV-23 7FCZ 1 REMARK REVDAT 3 23-FEB-22 7FCZ 1 JRNL REVDAT 2 16-FEB-22 7FCZ 1 JRNL REVDAT 1 19-JAN-22 7FCZ 0 JRNL AUTH X.YANG,H.LU,H.XIE,B.ZHANG,T.NIE,C.FAN,T.YANG,Y.XU,H.SU, JRNL AUTH 2 W.TANG,B.ZHOU JRNL TITL POTENT AND SELECTIVE RIPK1 INHIBITORS TARGETING DUAL-POCKETS JRNL TITL 2 FOR THE TREATMENT OF SYSTEMIC INFLAMMATORY RESPONSE SYNDROME JRNL TITL 3 AND SEPSIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 14922 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 34851543 JRNL DOI 10.1002/ANIE.202114922 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 28516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0500 - 4.7500 1.00 2933 163 0.2204 0.2329 REMARK 3 2 4.7500 - 3.7700 1.00 2857 150 0.1965 0.2003 REMARK 3 3 3.7700 - 3.2900 1.00 2775 148 0.2260 0.2438 REMARK 3 4 3.2900 - 2.9900 1.00 2786 152 0.2558 0.2808 REMARK 3 5 2.9900 - 2.7800 1.00 2783 138 0.2654 0.2991 REMARK 3 6 2.7800 - 2.6200 1.00 2748 131 0.2507 0.3032 REMARK 3 7 2.6200 - 2.4800 0.99 2712 147 0.2655 0.3169 REMARK 3 8 2.4800 - 2.3800 0.97 2642 138 0.2636 0.2903 REMARK 3 9 2.3800 - 2.2800 0.94 2570 158 0.2631 0.2976 REMARK 3 10 2.2800 - 2.2100 0.83 2260 125 0.2715 0.3065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4717 14.6246 -11.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.3949 T22: 0.2787 REMARK 3 T33: 0.3932 T12: -0.0158 REMARK 3 T13: -0.0885 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.6319 L22: 6.3147 REMARK 3 L33: 3.1395 L12: 1.0712 REMARK 3 L13: 1.0988 L23: 2.0817 REMARK 3 S TENSOR REMARK 3 S11: -0.2758 S12: -0.0394 S13: 0.6905 REMARK 3 S21: 0.1178 S22: 0.1984 S23: -0.2075 REMARK 3 S31: -0.6963 S32: 0.0774 S33: 0.1146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5112 1.7182 -15.3662 REMARK 3 T TENSOR REMARK 3 T11: 0.3059 T22: 0.5288 REMARK 3 T33: 0.4739 T12: 0.0923 REMARK 3 T13: -0.0246 T23: -0.1489 REMARK 3 L TENSOR REMARK 3 L11: 1.3869 L22: 3.2876 REMARK 3 L33: 2.4939 L12: 0.5386 REMARK 3 L13: 1.1805 L23: 1.3135 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.2053 S13: 0.3801 REMARK 3 S21: 0.0695 S22: -0.3408 S23: 0.8030 REMARK 3 S31: -0.2420 S32: -0.8848 S33: 0.3083 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4848 -10.0192 -9.3065 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.2616 REMARK 3 T33: 0.1890 T12: -0.0479 REMARK 3 T13: -0.0025 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 2.2098 L22: 2.0213 REMARK 3 L33: 5.1668 L12: 0.1478 REMARK 3 L13: 1.3516 L23: 0.2188 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.3264 S13: -0.0744 REMARK 3 S21: 0.2847 S22: -0.1988 S23: 0.0425 REMARK 3 S31: 0.2531 S32: -0.5545 S33: 0.1358 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4830 -31.9474 -32.4397 REMARK 3 T TENSOR REMARK 3 T11: 0.6743 T22: 0.2222 REMARK 3 T33: 0.4655 T12: -0.0395 REMARK 3 T13: -0.0652 T23: 0.1197 REMARK 3 L TENSOR REMARK 3 L11: 5.5092 L22: 1.6504 REMARK 3 L33: 7.6015 L12: -0.6103 REMARK 3 L13: 1.1127 L23: 2.2864 REMARK 3 S TENSOR REMARK 3 S11: -0.3845 S12: 0.0166 S13: -0.1261 REMARK 3 S21: 0.9187 S22: -0.6162 S23: -0.2244 REMARK 3 S31: -0.2889 S32: -0.1328 S33: 0.7039 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3724 -27.6400 -39.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.4364 T22: 0.1530 REMARK 3 T33: 0.4284 T12: -0.0374 REMARK 3 T13: -0.0855 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 5.6161 L22: 1.7301 REMARK 3 L33: 2.9594 L12: -0.4899 REMARK 3 L13: 2.1072 L23: 0.5410 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.4214 S13: -0.1444 REMARK 3 S21: 0.2517 S22: -0.0285 S23: 0.0431 REMARK 3 S31: -0.1362 S32: 0.2158 S33: 0.0491 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3576 -20.5604 -28.7025 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.2186 REMARK 3 T33: 0.2448 T12: -0.0393 REMARK 3 T13: -0.0882 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.9424 L22: 6.8567 REMARK 3 L33: 0.1244 L12: -2.6070 REMARK 3 L13: -0.4947 L23: -0.1017 REMARK 3 S TENSOR REMARK 3 S11: 0.1958 S12: -0.5269 S13: -0.4869 REMARK 3 S21: -0.1374 S22: 0.1826 S23: -0.2573 REMARK 3 S31: 0.1379 S32: -0.0011 S33: -0.2992 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6717 -15.0464 -42.9359 REMARK 3 T TENSOR REMARK 3 T11: 0.3331 T22: 0.2303 REMARK 3 T33: 0.2489 T12: -0.0744 REMARK 3 T13: -0.1025 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.6675 L22: 5.3442 REMARK 3 L33: 1.6245 L12: -1.9942 REMARK 3 L13: -0.6411 L23: 0.2152 REMARK 3 S TENSOR REMARK 3 S11: 0.2158 S12: 0.0876 S13: -0.4025 REMARK 3 S21: -0.4245 S22: -0.0383 S23: 0.2341 REMARK 3 S31: 0.4871 S32: -0.4784 S33: -0.2064 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 112 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3553 -6.2397 -34.8963 REMARK 3 T TENSOR REMARK 3 T11: 0.1827 T22: 0.1733 REMARK 3 T33: 0.1787 T12: -0.0067 REMARK 3 T13: -0.0014 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 2.5445 L22: 3.0507 REMARK 3 L33: 4.2997 L12: -0.0297 REMARK 3 L13: -0.2660 L23: -0.0211 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: -0.1298 S13: -0.2239 REMARK 3 S21: 0.0492 S22: 0.0384 S23: 0.1010 REMARK 3 S31: 0.2877 S32: -0.1864 S33: -0.1162 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0683 -17.0869 -36.2684 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.3549 REMARK 3 T33: 0.3043 T12: 0.0498 REMARK 3 T13: -0.0735 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 4.4030 L22: 2.7432 REMARK 3 L33: 3.4077 L12: 1.4472 REMARK 3 L13: 1.8109 L23: -0.6283 REMARK 3 S TENSOR REMARK 3 S11: 0.3485 S12: -0.3703 S13: -0.3373 REMARK 3 S21: 0.2351 S22: -0.2005 S23: -0.7134 REMARK 3 S31: 0.2015 S32: 0.5669 S33: -0.1825 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2906 -1.8733 -42.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.3238 T22: 0.4792 REMARK 3 T33: 0.4545 T12: 0.0401 REMARK 3 T13: 0.0327 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.0627 L22: 1.2249 REMARK 3 L33: 0.9312 L12: -1.6016 REMARK 3 L13: 0.6134 L23: -0.5159 REMARK 3 S TENSOR REMARK 3 S11: 0.2883 S12: 0.9008 S13: 0.0209 REMARK 3 S21: -0.0488 S22: -0.2341 S23: -0.4571 REMARK 3 S31: 0.6132 S32: 1.3921 S33: -0.0775 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1326 3.2660 -47.3836 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.1641 REMARK 3 T33: 0.2117 T12: 0.0077 REMARK 3 T13: -0.0128 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.3756 L22: 3.2926 REMARK 3 L33: 5.2549 L12: 1.2736 REMARK 3 L13: -0.4225 L23: -1.2524 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.3136 S13: 0.1427 REMARK 3 S21: -0.2325 S22: 0.2006 S23: -0.0835 REMARK 3 S31: 0.3164 S32: 0.2571 S33: -0.1050 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 243 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4957 10.2506 -41.9075 REMARK 3 T TENSOR REMARK 3 T11: 0.2613 T22: 0.2083 REMARK 3 T33: 0.3274 T12: 0.0380 REMARK 3 T13: 0.0458 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 2.0073 L22: 3.1765 REMARK 3 L33: 5.8170 L12: -0.6199 REMARK 3 L13: -1.3996 L23: -1.3226 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.1880 S13: 0.3446 REMARK 3 S21: -0.0757 S22: 0.2911 S23: 0.4427 REMARK 3 S31: -0.6758 S32: -0.6285 S33: -0.4401 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 278 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6053 5.1488 -30.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.2643 REMARK 3 T33: 0.3188 T12: 0.0072 REMARK 3 T13: 0.0174 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.0798 L22: 2.6904 REMARK 3 L33: 4.3424 L12: 0.0401 REMARK 3 L13: 2.1348 L23: 0.2226 REMARK 3 S TENSOR REMARK 3 S11: 0.3412 S12: -0.7204 S13: 0.5552 REMARK 3 S21: 0.1960 S22: -0.0725 S23: 0.3474 REMARK 3 S31: -0.3724 S32: -0.6124 S33: -0.2833 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29171 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.23400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 1.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4ITH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M AMMONIUM IODIDE, 0.03 M GLYCYL REMARK 280 -GLYCYL-GLYCINE AND 15-25% PEG3350., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.33700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.95350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.85250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.95350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.33700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.85250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 21.33700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 64.95350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 ASN A 8 REMARK 465 VAL A 9 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 PHE A 28 REMARK 465 GLY A 29 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 CYS A 53 REMARK 465 ILE A 54 REMARK 465 GLU A 55 REMARK 465 HIS A 56 REMARK 465 GLU A 107 REMARK 465 MET A 108 REMARK 465 ASN A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 HIS A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 ILE A 232 REMARK 465 ALA A 233 REMARK 465 GLU A 234 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 PRO B 51 REMARK 465 ASN B 52 REMARK 465 CYS B 53 REMARK 465 ILE B 54 REMARK 465 GLU B 55 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 GLU B 175 REMARK 465 LEU B 176 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 VAL B 179 REMARK 465 ASP B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 ASN B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 13 CG CD CE NZ REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 ASP A 24 CG OD1 OD2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 TYR A 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 GLN A 235 CG CD OE1 NE2 REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LEU B 23 CG CD1 CD2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 GLU B 58 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 MET B 108 CG SD CE REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 VAL B 201 CG1 CG2 REMARK 470 ASN B 202 CG OD1 ND2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 TYR B 255 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 137 -13.72 73.26 REMARK 500 ASP A 138 48.30 -141.46 REMARK 500 LYS B 137 -17.48 80.61 REMARK 500 ASP B 138 48.65 -143.69 REMARK 500 TYR B 228 36.53 70.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FCZ A 1 294 UNP Q13546 RIPK1_HUMAN 1 294 DBREF 7FCZ B 1 294 UNP Q13546 RIPK1_HUMAN 1 294 SEQADV 7FCZ GLY A -2 UNP Q13546 EXPRESSION TAG SEQADV 7FCZ ALA A -1 UNP Q13546 EXPRESSION TAG SEQADV 7FCZ SER A 0 UNP Q13546 EXPRESSION TAG SEQADV 7FCZ ALA A 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 7FCZ ALA A 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 7FCZ ALA A 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 7FCZ ALA A 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQADV 7FCZ GLY B -2 UNP Q13546 EXPRESSION TAG SEQADV 7FCZ ALA B -1 UNP Q13546 EXPRESSION TAG SEQADV 7FCZ SER B 0 UNP Q13546 EXPRESSION TAG SEQADV 7FCZ ALA B 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 7FCZ ALA B 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 7FCZ ALA B 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 7FCZ ALA B 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQRES 1 A 297 GLY ALA SER MET GLN PRO ASP MET SER LEU ASN VAL ILE SEQRES 2 A 297 LYS MET LYS SER SER ASP PHE LEU GLU SER ALA GLU LEU SEQRES 3 A 297 ASP SER GLY GLY PHE GLY LYS VAL SER LEU ALA PHE HIS SEQRES 4 A 297 ARG THR GLN GLY LEU MET ILE MET LYS THR VAL TYR LYS SEQRES 5 A 297 GLY PRO ASN CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU SEQRES 6 A 297 GLU ALA LYS MET MET ASN ARG LEU ARG HIS SER ARG VAL SEQRES 7 A 297 VAL LYS LEU LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SEQRES 8 A 297 SER LEU VAL MET GLU TYR MET GLU LYS GLY ASN LEU MET SEQRES 9 A 297 HIS VAL LEU LYS ALA GLU MET SER THR PRO LEU SER VAL SEQRES 10 A 297 LYS GLY ARG ILE ILE LEU GLU ILE ILE GLU GLY MET ALA SEQRES 11 A 297 TYR LEU HIS GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS SEQRES 12 A 297 PRO GLU ASN ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS SEQRES 13 A 297 ILE ALA ASP LEU GLY LEU ALA SER PHE LYS MET TRP SER SEQRES 14 A 297 LYS LEU ASN ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL SEQRES 15 A 297 ASP GLY THR ALA LYS LYS ASN GLY GLY THR LEU TYR TYR SEQRES 16 A 297 MET ALA PRO GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO SEQRES 17 A 297 THR GLU LYS SER ASP VAL TYR SER PHE ALA VAL VAL LEU SEQRES 18 A 297 TRP ALA ILE PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA SEQRES 19 A 297 ILE ALA GLU GLN GLN LEU ILE MET ALA ILE LYS SER GLY SEQRES 20 A 297 ASN ARG PRO ASP VAL ASP ASP ILE THR GLU TYR CYS PRO SEQRES 21 A 297 ARG GLU ILE ILE SER LEU MET LYS LEU CYS TRP GLU ALA SEQRES 22 A 297 ASN PRO GLU ALA ARG PRO THR PHE PRO GLY ILE GLU GLU SEQRES 23 A 297 LYS PHE ARG PRO PHE TYR LEU SER GLN LEU GLU SEQRES 1 B 297 GLY ALA SER MET GLN PRO ASP MET SER LEU ASN VAL ILE SEQRES 2 B 297 LYS MET LYS SER SER ASP PHE LEU GLU SER ALA GLU LEU SEQRES 3 B 297 ASP SER GLY GLY PHE GLY LYS VAL SER LEU ALA PHE HIS SEQRES 4 B 297 ARG THR GLN GLY LEU MET ILE MET LYS THR VAL TYR LYS SEQRES 5 B 297 GLY PRO ASN CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU SEQRES 6 B 297 GLU ALA LYS MET MET ASN ARG LEU ARG HIS SER ARG VAL SEQRES 7 B 297 VAL LYS LEU LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SEQRES 8 B 297 SER LEU VAL MET GLU TYR MET GLU LYS GLY ASN LEU MET SEQRES 9 B 297 HIS VAL LEU LYS ALA GLU MET SER THR PRO LEU SER VAL SEQRES 10 B 297 LYS GLY ARG ILE ILE LEU GLU ILE ILE GLU GLY MET ALA SEQRES 11 B 297 TYR LEU HIS GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS SEQRES 12 B 297 PRO GLU ASN ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS SEQRES 13 B 297 ILE ALA ASP LEU GLY LEU ALA SER PHE LYS MET TRP SER SEQRES 14 B 297 LYS LEU ASN ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL SEQRES 15 B 297 ASP GLY THR ALA LYS LYS ASN GLY GLY THR LEU TYR TYR SEQRES 16 B 297 MET ALA PRO GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO SEQRES 17 B 297 THR GLU LYS SER ASP VAL TYR SER PHE ALA VAL VAL LEU SEQRES 18 B 297 TRP ALA ILE PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA SEQRES 19 B 297 ILE ALA GLU GLN GLN LEU ILE MET ALA ILE LYS SER GLY SEQRES 20 B 297 ASN ARG PRO ASP VAL ASP ASP ILE THR GLU TYR CYS PRO SEQRES 21 B 297 ARG GLU ILE ILE SER LEU MET LYS LEU CYS TRP GLU ALA SEQRES 22 B 297 ASN PRO GLU ALA ARG PRO THR PHE PRO GLY ILE GLU GLU SEQRES 23 B 297 LYS PHE ARG PRO PHE TYR LEU SER GLN LEU GLU HET 3IF A 301 33 HET 3IF B 301 33 HETNAM 3IF N-[(3S)-7-(2-CYCLOPROPYLETHYNYL)-5-METHYL-4- HETNAM 2 3IF OXIDANYLIDENE-2,3-DIHYDRO-1,5-BENZOXAZEPIN-3-YL]-5- HETNAM 3 3IF (PHENYLMETHYL)-4H-1,2,4-TRIAZOLE-3-CARBOXAMIDE FORMUL 3 3IF 2(C25 H23 N5 O3) FORMUL 5 HOH *82(H2 O) HELIX 1 AA1 LYS A 13 SER A 15 5 3 HELIX 2 AA2 GLU A 58 ARG A 69 1 12 HELIX 3 AA3 ASN A 99 LYS A 105 1 7 HELIX 4 AA4 PRO A 111 LYS A 132 1 22 HELIX 5 AA5 LYS A 140 GLU A 142 5 3 HELIX 6 AA6 PHE A 162 LYS A 167 1 6 HELIX 7 AA7 THR A 206 ASN A 224 1 19 HELIX 8 AA8 GLN A 236 SER A 243 1 8 HELIX 9 AA9 ASP A 248 ILE A 252 5 5 HELIX 10 AB1 PRO A 257 TRP A 268 1 12 HELIX 11 AB2 ASN A 271 ARG A 275 5 5 HELIX 12 AB3 THR A 277 LEU A 293 1 17 HELIX 13 AB4 LEU B 7 LYS B 11 5 5 HELIX 14 AB5 LYS B 13 SER B 15 5 3 HELIX 15 AB6 ASN B 57 ARG B 69 1 13 HELIX 16 AB7 ASN B 99 LYS B 105 1 7 HELIX 17 AB8 PRO B 111 LYS B 132 1 22 HELIX 18 AB9 LYS B 140 GLU B 142 5 3 HELIX 19 AC1 PHE B 162 ASN B 169 1 8 HELIX 20 AC2 ALA B 194 LEU B 198 5 5 HELIX 21 AC3 THR B 206 ASN B 224 1 19 HELIX 22 AC4 ALA B 233 SER B 243 1 11 HELIX 23 AC5 ASP B 248 ILE B 252 5 5 HELIX 24 AC6 PRO B 257 TRP B 268 1 12 HELIX 25 AC7 ASN B 271 ARG B 275 5 5 HELIX 26 AC8 THR B 277 LEU B 293 1 17 SHEET 1 AA1 6 LYS A 11 MET A 12 0 SHEET 2 AA1 6 LEU A 78 GLU A 84 1 O VAL A 81 N MET A 12 SHEET 3 AA1 6 LYS A 87 GLU A 93 -1 O VAL A 91 N GLY A 80 SHEET 4 AA1 6 GLY A 40 LYS A 49 -1 N TYR A 48 O TYR A 88 SHEET 5 AA1 6 VAL A 31 HIS A 36 -1 N ALA A 34 O MET A 42 SHEET 6 AA1 6 PHE A 17 LEU A 23 -1 N LEU A 18 O PHE A 35 SHEET 1 AA2 2 ILE A 144 VAL A 146 0 SHEET 2 AA2 2 ILE A 152 ILE A 154 -1 O LYS A 153 N LEU A 145 SHEET 1 AA3 5 PHE B 17 GLU B 22 0 SHEET 2 AA3 5 LYS B 30 HIS B 36 -1 O PHE B 35 N LEU B 18 SHEET 3 AA3 5 GLY B 40 TYR B 48 -1 O MET B 42 N ALA B 34 SHEET 4 AA3 5 LYS B 87 GLU B 93 -1 O MET B 92 N ILE B 43 SHEET 5 AA3 5 GLY B 80 GLU B 84 -1 N ILE B 82 O SER B 89 SHEET 1 AA4 2 ILE B 144 VAL B 146 0 SHEET 2 AA4 2 ILE B 152 ILE B 154 -1 O LYS B 153 N LEU B 145 CRYST1 42.674 101.705 129.907 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023433 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007698 0.00000