HEADER IMMUNE SYSTEM/INHIBITOR 15-JUL-21 7FD0 TITLE CRYSTAL STRUCTURE OF HUMAN RIPK1 KINASE DOMAIN IN COMPLEX WITH A NOVEL TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DEATH PROTEIN RIP,RECEPTOR-INTERACTING PROTEIN 1,RIP-1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK1, RIP, RIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS IMMUNE SYSTEM-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.X.SU,H.XIE,T.Q.NIE,M.J.LI,Y.C.XU REVDAT 4 29-NOV-23 7FD0 1 REMARK REVDAT 3 23-FEB-22 7FD0 1 JRNL REVDAT 2 16-FEB-22 7FD0 1 JRNL REVDAT 1 19-JAN-22 7FD0 0 JRNL AUTH X.YANG,H.LU,H.XIE,B.ZHANG,T.NIE,C.FAN,T.YANG,Y.XU,H.SU, JRNL AUTH 2 W.TANG,B.ZHOU JRNL TITL POTENT AND SELECTIVE RIPK1 INHIBITORS TARGETING DUAL-POCKETS JRNL TITL 2 FOR THE TREATMENT OF SYSTEMIC INFLAMMATORY RESPONSE SYNDROME JRNL TITL 3 AND SEPSIS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 14922 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 34851543 JRNL DOI 10.1002/ANIE.202114922 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 38814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1700 - 4.8200 0.99 2924 134 0.2261 0.2642 REMARK 3 2 4.8200 - 3.8300 0.99 2742 169 0.1854 0.2178 REMARK 3 3 3.8300 - 3.3500 1.00 2715 154 0.2104 0.2398 REMARK 3 4 3.3500 - 3.0400 0.99 2723 132 0.2407 0.2922 REMARK 3 5 3.0400 - 2.8200 1.00 2710 137 0.2599 0.2689 REMARK 3 6 2.8200 - 2.6600 1.00 2693 142 0.2561 0.2980 REMARK 3 7 2.6600 - 2.5200 1.00 2679 153 0.2527 0.2700 REMARK 3 8 2.5200 - 2.4100 0.99 2658 151 0.2460 0.3062 REMARK 3 9 2.4100 - 2.3200 1.00 2686 132 0.2490 0.2743 REMARK 3 10 2.3200 - 2.2400 1.00 2692 105 0.2505 0.2695 REMARK 3 11 2.2400 - 2.1700 0.98 2639 146 0.2448 0.3033 REMARK 3 12 2.1700 - 2.1100 0.97 2612 120 0.2528 0.3241 REMARK 3 13 2.1100 - 2.0500 0.92 2419 138 0.2463 0.2802 REMARK 3 14 2.0500 - 2.0000 0.74 2001 108 0.2423 0.2689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1694 -26.4702 21.4083 REMARK 3 T TENSOR REMARK 3 T11: 0.3589 T22: 0.2114 REMARK 3 T33: 0.3548 T12: -0.0435 REMARK 3 T13: -0.0307 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 4.8644 L22: 4.6158 REMARK 3 L33: 7.1679 L12: -0.9924 REMARK 3 L13: 1.8744 L23: 0.4550 REMARK 3 S TENSOR REMARK 3 S11: 0.3243 S12: 0.0562 S13: -0.3857 REMARK 3 S21: -0.2733 S22: 0.2976 S23: -0.5485 REMARK 3 S31: 0.7476 S32: 0.1834 S33: -0.6316 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7315 -20.3821 35.2057 REMARK 3 T TENSOR REMARK 3 T11: 0.3234 T22: 0.2944 REMARK 3 T33: 0.8885 T12: 0.0170 REMARK 3 T13: -0.3587 T23: -0.1037 REMARK 3 L TENSOR REMARK 3 L11: 8.4255 L22: 2.1818 REMARK 3 L33: 4.7761 L12: -3.9370 REMARK 3 L13: -0.8747 L23: -0.1249 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: -0.6087 S13: 0.1807 REMARK 3 S21: 0.7419 S22: 0.5924 S23: -1.6226 REMARK 3 S31: 0.1998 S32: 0.6350 S33: -0.4370 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9816 -20.2583 29.5731 REMARK 3 T TENSOR REMARK 3 T11: 0.2077 T22: 0.1461 REMARK 3 T33: 0.3638 T12: -0.0386 REMARK 3 T13: -0.0850 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 5.7378 L22: 8.7797 REMARK 3 L33: 4.5339 L12: -5.2588 REMARK 3 L13: -1.3274 L23: 2.4392 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.0820 S13: -0.3927 REMARK 3 S21: 0.3008 S22: 0.4180 S23: -0.5544 REMARK 3 S31: 0.5238 S32: 0.1588 S33: -0.3250 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9256 -6.5342 23.9504 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1547 REMARK 3 T33: 0.1608 T12: -0.0483 REMARK 3 T13: -0.0018 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 4.4930 L22: 5.9789 REMARK 3 L33: 4.3011 L12: -0.5408 REMARK 3 L13: 0.8869 L23: -0.5832 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.2419 S13: -0.4066 REMARK 3 S21: -0.3460 S22: 0.2439 S23: 0.2969 REMARK 3 S31: 0.1188 S32: -0.4504 S33: -0.2272 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8100 -0.8472 22.9282 REMARK 3 T TENSOR REMARK 3 T11: 0.1866 T22: 0.1821 REMARK 3 T33: 0.3610 T12: -0.0314 REMARK 3 T13: 0.0941 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.6251 L22: 4.5338 REMARK 3 L33: 3.4612 L12: 0.8959 REMARK 3 L13: 0.0430 L23: -1.8678 REMARK 3 S TENSOR REMARK 3 S11: 0.0917 S12: 0.1733 S13: -0.2734 REMARK 3 S21: -0.2263 S22: -0.0884 S23: -0.9770 REMARK 3 S31: -0.1807 S32: 0.4776 S33: 0.0033 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9286 6.7448 9.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.4739 T22: 0.1173 REMARK 3 T33: 0.2410 T12: -0.0670 REMARK 3 T13: 0.3290 T23: 0.0580 REMARK 3 L TENSOR REMARK 3 L11: 2.7290 L22: 3.1123 REMARK 3 L33: 6.4595 L12: 0.8363 REMARK 3 L13: -1.7618 L23: -1.7574 REMARK 3 S TENSOR REMARK 3 S11: 0.2459 S12: 0.4060 S13: -0.7192 REMARK 3 S21: -1.3144 S22: -0.1102 S23: -0.5815 REMARK 3 S31: -0.0080 S32: 0.3437 S33: -0.0233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3984 9.4355 24.5587 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.1751 REMARK 3 T33: 0.2542 T12: 0.0774 REMARK 3 T13: 0.1185 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 4.0625 L22: 3.7017 REMARK 3 L33: 4.1228 L12: -0.0803 REMARK 3 L13: -2.3397 L23: -0.6627 REMARK 3 S TENSOR REMARK 3 S11: 0.1017 S12: 0.2694 S13: 0.3882 REMARK 3 S21: -0.0714 S22: 0.1616 S23: 0.2813 REMARK 3 S31: -0.6544 S32: -0.6428 S33: -0.2659 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3207 18.5192 52.2646 REMARK 3 T TENSOR REMARK 3 T11: 0.6307 T22: 0.2166 REMARK 3 T33: 0.4388 T12: 0.0226 REMARK 3 T13: -0.1486 T23: -0.0815 REMARK 3 L TENSOR REMARK 3 L11: 2.6309 L22: 3.4947 REMARK 3 L33: 5.3149 L12: -1.1126 REMARK 3 L13: 0.0429 L23: -1.3995 REMARK 3 S TENSOR REMARK 3 S11: -0.5130 S12: -0.0576 S13: 0.9663 REMARK 3 S21: 0.4312 S22: 0.0915 S23: -0.4505 REMARK 3 S31: -1.4723 S32: 0.2106 S33: 0.0946 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0458 10.8511 55.7948 REMARK 3 T TENSOR REMARK 3 T11: 0.4299 T22: 0.2388 REMARK 3 T33: 0.3619 T12: -0.0760 REMARK 3 T13: -0.1268 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 1.4190 L22: 2.6780 REMARK 3 L33: 3.4751 L12: 0.3343 REMARK 3 L13: 0.4280 L23: 1.3771 REMARK 3 S TENSOR REMARK 3 S11: -0.2448 S12: -0.2061 S13: 0.5452 REMARK 3 S21: 0.1201 S22: 0.1730 S23: -0.3493 REMARK 3 S31: -0.6856 S32: 0.3100 S33: 0.1515 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4307 -2.7935 50.1521 REMARK 3 T TENSOR REMARK 3 T11: 0.2445 T22: 0.1923 REMARK 3 T33: 0.1738 T12: 0.0446 REMARK 3 T13: -0.0310 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 3.0248 L22: 5.6104 REMARK 3 L33: 4.0617 L12: 0.9331 REMARK 3 L13: 0.4147 L23: 0.5571 REMARK 3 S TENSOR REMARK 3 S11: -0.1854 S12: -0.0728 S13: 0.4172 REMARK 3 S21: 0.1456 S22: 0.1144 S23: 0.3038 REMARK 3 S31: -0.5738 S32: -0.4189 S33: 0.0741 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6656 -17.5952 54.1731 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1216 REMARK 3 T33: 0.1594 T12: -0.0374 REMARK 3 T13: -0.0767 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 3.0934 L22: 3.4969 REMARK 3 L33: 6.9023 L12: 1.1865 REMARK 3 L13: -0.5428 L23: 0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0615 S13: -0.0853 REMARK 3 S21: 0.0678 S22: 0.0773 S23: -0.0569 REMARK 3 S31: 0.3637 S32: -0.4755 S33: -0.0939 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39912 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 1.21600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4ITH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M AMMONIUM IODIDE, 0.03 M GLYCYL REMARK 280 -GLYCYL-GLYCINE AND 15-25% PEG3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.41600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.97900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.97900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.41600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -23.41600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -62.97900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 ASN A 8 REMARK 465 ASN A 170 REMARK 465 GLU A 171 REMARK 465 GLU A 172 REMARK 465 HIS A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 176 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 THR A 189 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 ASN B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 21 REMARK 465 GLU B 22 REMARK 465 LEU B 23 REMARK 465 ASP B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 ILE B 54 REMARK 465 GLU B 55 REMARK 465 LYS B 167 REMARK 465 ASN B 170 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 GLU B 175 REMARK 465 LEU B 176 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 VAL B 179 REMARK 465 ASP B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 ASN B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 TYR A 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 MET A 108 CG SD CE REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 MET A 164 CG SD CE REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LEU A 168 CG CD1 CD2 REMARK 470 VAL A 201 CG1 CG2 REMARK 470 ASN A 202 CG OD1 ND2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 GLU A 294 CG CD OE1 OE2 REMARK 470 ILE B 10 CG1 CG2 CD1 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 48 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 CYS B 53 SG REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 MET B 108 CG SD CE REMARK 470 ASN B 148 CG OD1 ND2 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 470 GLN B 235 CG CD OE1 NE2 REMARK 470 LYS B 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 53 59.16 -140.78 REMARK 500 LYS A 137 -10.83 82.11 REMARK 500 ASP A 138 40.88 -146.21 REMARK 500 ASP A 156 61.37 -119.42 REMARK 500 GLU B 85 104.65 -50.45 REMARK 500 LYS B 137 -12.70 81.07 REMARK 500 ASP B 138 43.25 -142.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FD0 A 1 294 UNP Q13546 RIPK1_HUMAN 1 294 DBREF 7FD0 B 1 294 UNP Q13546 RIPK1_HUMAN 1 294 SEQADV 7FD0 GLY A -2 UNP Q13546 EXPRESSION TAG SEQADV 7FD0 ALA A -1 UNP Q13546 EXPRESSION TAG SEQADV 7FD0 SER A 0 UNP Q13546 EXPRESSION TAG SEQADV 7FD0 ALA A 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 7FD0 ALA A 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 7FD0 ALA A 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 7FD0 ALA A 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQADV 7FD0 GLY B -2 UNP Q13546 EXPRESSION TAG SEQADV 7FD0 ALA B -1 UNP Q13546 EXPRESSION TAG SEQADV 7FD0 SER B 0 UNP Q13546 EXPRESSION TAG SEQADV 7FD0 ALA B 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 7FD0 ALA B 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 7FD0 ALA B 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 7FD0 ALA B 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQRES 1 A 297 GLY ALA SER MET GLN PRO ASP MET SER LEU ASN VAL ILE SEQRES 2 A 297 LYS MET LYS SER SER ASP PHE LEU GLU SER ALA GLU LEU SEQRES 3 A 297 ASP SER GLY GLY PHE GLY LYS VAL SER LEU ALA PHE HIS SEQRES 4 A 297 ARG THR GLN GLY LEU MET ILE MET LYS THR VAL TYR LYS SEQRES 5 A 297 GLY PRO ASN CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU SEQRES 6 A 297 GLU ALA LYS MET MET ASN ARG LEU ARG HIS SER ARG VAL SEQRES 7 A 297 VAL LYS LEU LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SEQRES 8 A 297 SER LEU VAL MET GLU TYR MET GLU LYS GLY ASN LEU MET SEQRES 9 A 297 HIS VAL LEU LYS ALA GLU MET SER THR PRO LEU SER VAL SEQRES 10 A 297 LYS GLY ARG ILE ILE LEU GLU ILE ILE GLU GLY MET ALA SEQRES 11 A 297 TYR LEU HIS GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS SEQRES 12 A 297 PRO GLU ASN ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS SEQRES 13 A 297 ILE ALA ASP LEU GLY LEU ALA SER PHE LYS MET TRP SER SEQRES 14 A 297 LYS LEU ASN ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL SEQRES 15 A 297 ASP GLY THR ALA LYS LYS ASN GLY GLY THR LEU TYR TYR SEQRES 16 A 297 MET ALA PRO GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO SEQRES 17 A 297 THR GLU LYS SER ASP VAL TYR SER PHE ALA VAL VAL LEU SEQRES 18 A 297 TRP ALA ILE PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA SEQRES 19 A 297 ILE ALA GLU GLN GLN LEU ILE MET ALA ILE LYS SER GLY SEQRES 20 A 297 ASN ARG PRO ASP VAL ASP ASP ILE THR GLU TYR CYS PRO SEQRES 21 A 297 ARG GLU ILE ILE SER LEU MET LYS LEU CYS TRP GLU ALA SEQRES 22 A 297 ASN PRO GLU ALA ARG PRO THR PHE PRO GLY ILE GLU GLU SEQRES 23 A 297 LYS PHE ARG PRO PHE TYR LEU SER GLN LEU GLU SEQRES 1 B 297 GLY ALA SER MET GLN PRO ASP MET SER LEU ASN VAL ILE SEQRES 2 B 297 LYS MET LYS SER SER ASP PHE LEU GLU SER ALA GLU LEU SEQRES 3 B 297 ASP SER GLY GLY PHE GLY LYS VAL SER LEU ALA PHE HIS SEQRES 4 B 297 ARG THR GLN GLY LEU MET ILE MET LYS THR VAL TYR LYS SEQRES 5 B 297 GLY PRO ASN CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU SEQRES 6 B 297 GLU ALA LYS MET MET ASN ARG LEU ARG HIS SER ARG VAL SEQRES 7 B 297 VAL LYS LEU LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SEQRES 8 B 297 SER LEU VAL MET GLU TYR MET GLU LYS GLY ASN LEU MET SEQRES 9 B 297 HIS VAL LEU LYS ALA GLU MET SER THR PRO LEU SER VAL SEQRES 10 B 297 LYS GLY ARG ILE ILE LEU GLU ILE ILE GLU GLY MET ALA SEQRES 11 B 297 TYR LEU HIS GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS SEQRES 12 B 297 PRO GLU ASN ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS SEQRES 13 B 297 ILE ALA ASP LEU GLY LEU ALA SER PHE LYS MET TRP SER SEQRES 14 B 297 LYS LEU ASN ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL SEQRES 15 B 297 ASP GLY THR ALA LYS LYS ASN GLY GLY THR LEU TYR TYR SEQRES 16 B 297 MET ALA PRO GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO SEQRES 17 B 297 THR GLU LYS SER ASP VAL TYR SER PHE ALA VAL VAL LEU SEQRES 18 B 297 TRP ALA ILE PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA SEQRES 19 B 297 ILE ALA GLU GLN GLN LEU ILE MET ALA ILE LYS SER GLY SEQRES 20 B 297 ASN ARG PRO ASP VAL ASP ASP ILE THR GLU TYR CYS PRO SEQRES 21 B 297 ARG GLU ILE ILE SER LEU MET LYS LEU CYS TRP GLU ALA SEQRES 22 B 297 ASN PRO GLU ALA ARG PRO THR PHE PRO GLY ILE GLU GLU SEQRES 23 B 297 LYS PHE ARG PRO PHE TYR LEU SER GLN LEU GLU HET 3IU A 401 36 HET 3IU B 401 36 HETNAM 3IU N-[(3S)-5-METHYL-7-[2-(OXAN-4-YL)ETHYNYL]-4- HETNAM 2 3IU OXIDANYLIDENE-2,3-DIHYDRO-1,5-BENZOXAZEPIN-3-YL]-5- HETNAM 3 3IU (PHENYLMETHYL)-4H-1,2,4-TRIAZOLE-3-CARBOXAMIDE FORMUL 3 3IU 2(C27 H27 N5 O4) FORMUL 5 HOH *219(H2 O) HELIX 1 AA1 LYS A 13 SER A 15 5 3 HELIX 2 AA2 CYS A 53 GLU A 55 5 3 HELIX 3 AA3 HIS A 56 ASN A 68 1 13 HELIX 4 AA4 ASN A 99 LYS A 105 1 7 HELIX 5 AA5 PRO A 111 LYS A 132 1 22 HELIX 6 AA6 LYS A 140 GLU A 142 5 3 HELIX 7 AA7 PHE A 162 ASN A 169 1 8 HELIX 8 AA8 ALA A 194 LEU A 198 5 5 HELIX 9 AA9 THR A 206 ASN A 224 1 19 HELIX 10 AB1 ALA A 233 SER A 243 1 11 HELIX 11 AB2 ASP A 248 ILE A 252 5 5 HELIX 12 AB3 PRO A 257 TRP A 268 1 12 HELIX 13 AB4 ASN A 271 ARG A 275 5 5 HELIX 14 AB5 THR A 277 LEU A 293 1 17 HELIX 15 AB6 LYS B 13 SER B 15 5 3 HELIX 16 AB7 ASN B 57 LEU B 70 1 14 HELIX 17 AB8 ASN B 99 ALA B 106 1 8 HELIX 18 AB9 PRO B 111 LYS B 132 1 22 HELIX 19 AC1 LYS B 140 GLU B 142 5 3 HELIX 20 AC2 ALA B 194 LEU B 198 5 5 HELIX 21 AC3 THR B 206 ASN B 224 1 19 HELIX 22 AC4 ALA B 233 SER B 243 1 11 HELIX 23 AC5 ASP B 248 ILE B 252 5 5 HELIX 24 AC6 PRO B 257 TRP B 268 1 12 HELIX 25 AC7 ASN B 271 ARG B 275 5 5 HELIX 26 AC8 THR B 277 LEU B 293 1 17 SHEET 1 AA1 6 ILE A 10 MET A 12 0 SHEET 2 AA1 6 LEU A 78 GLU A 84 1 O VAL A 81 N ILE A 10 SHEET 3 AA1 6 LYS A 87 GLU A 93 -1 O VAL A 91 N LEU A 79 SHEET 4 AA1 6 GLY A 40 LYS A 49 -1 N ILE A 43 O MET A 92 SHEET 5 AA1 6 VAL A 31 HIS A 36 -1 N HIS A 36 O GLY A 40 SHEET 6 AA1 6 PHE A 17 LEU A 23 -1 N ALA A 21 O LEU A 33 SHEET 1 AA2 2 ILE A 144 VAL A 146 0 SHEET 2 AA2 2 ILE A 152 ILE A 154 -1 O LYS A 153 N LEU A 145 SHEET 1 AA3 6 LYS B 11 MET B 12 0 SHEET 2 AA3 6 LEU B 78 GLU B 84 1 O VAL B 81 N MET B 12 SHEET 3 AA3 6 LYS B 87 GLU B 93 -1 O LYS B 87 N GLU B 84 SHEET 4 AA3 6 GLY B 40 TYR B 48 -1 N VAL B 47 O TYR B 88 SHEET 5 AA3 6 VAL B 31 HIS B 36 -1 N SER B 32 O MET B 44 SHEET 6 AA3 6 PHE B 17 GLU B 19 -1 N LEU B 18 O PHE B 35 SHEET 1 AA4 2 ILE B 144 VAL B 146 0 SHEET 2 AA4 2 ILE B 152 ILE B 154 -1 O LYS B 153 N LEU B 145 CRYST1 46.832 98.330 125.958 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007939 0.00000