HEADER MEMBRANE PROTEIN 18-JUL-21 7FDY TITLE STRUCTURE OF OMPF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORIN OMPF; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: OMPF, D2185_10280; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.J.JEONG,W.J.SONG REVDAT 3 29-NOV-23 7FDY 1 REMARK REVDAT 2 19-APR-23 7FDY 1 TITLE JRNL REVDAT 1 16-NOV-22 7FDY 0 JRNL AUTH W.J.JEONG,W.J.SONG JRNL TITL DESIGN AND DIRECTED EVOLUTION OF NONCANONICAL JRNL TITL 2 BETA-STEREOSELECTIVE METALLOGLYCOSIDASES. JRNL REF NAT COMMUN V. 13 6844 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36369431 JRNL DOI 10.1038/S41467-022-34713-8 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 30643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1280 - 6.8671 0.99 2696 142 0.2724 0.2885 REMARK 3 2 6.8671 - 5.4624 1.00 2683 141 0.2427 0.2353 REMARK 3 3 5.4624 - 4.7753 1.00 2656 139 0.2339 0.2357 REMARK 3 4 4.7753 - 4.3403 0.99 2660 140 0.2311 0.2445 REMARK 3 5 4.3403 - 4.0300 0.99 2628 138 0.2689 0.2918 REMARK 3 6 4.0300 - 3.7930 0.98 2614 138 0.2875 0.3685 REMARK 3 7 3.7930 - 3.6034 0.99 2629 139 0.2927 0.3445 REMARK 3 8 3.6034 - 3.4468 0.99 2633 137 0.2919 0.3111 REMARK 3 9 3.4468 - 3.3143 0.99 2637 139 0.2961 0.3758 REMARK 3 10 3.3143 - 3.2001 0.99 2640 140 0.3225 0.3923 REMARK 3 11 3.2001 - 3.1001 0.99 2635 139 0.3787 0.4411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60349 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.128 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.747 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.72 REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2OMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 MM SODIUM CACODYLATE (PH 8.0), 43% REMARK 280 PEG 200, 0.12 M MGCL2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.30000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 70.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASN A 27 REMARK 465 GLY A 28 REMARK 465 MET B 0 REMARK 465 ASN B 27 REMARK 465 MET C 0 REMARK 465 ASN C 27 REMARK 465 GLY C 28 REMARK 465 GLU C 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 ARG B 235 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 ILE B 286 CG1 CG2 CD1 REMARK 470 LYS B 323 CG CD CE NZ REMARK 470 ILE C 3 CG1 CG2 CD1 REMARK 470 LYS C 6 CG CD CE NZ REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 LYS C 25 CG CD CE NZ REMARK 470 ASN C 30 CG OD1 ND2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 GLN C 50 CG CD OE1 NE2 REMARK 470 ILE C 51 CG1 CG2 CD1 REMARK 470 ASN C 52 CG OD1 ND2 REMARK 470 SER C 53 OG REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 LYS C 89 CG CD CE NZ REMARK 470 VAL C 105 CG1 CG2 REMARK 470 LEU C 109 CG CD1 CD2 REMARK 470 PHE C 128 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP C 149 CG OD1 OD2 REMARK 470 LYS C 160 CG CD CE NZ REMARK 470 TYR C 182 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 201 CG CD OE1 OE2 REMARK 470 ASN C 207 CG OD1 ND2 REMARK 470 LYS C 209 CG CD CE NZ REMARK 470 LYS C 210 CG CD CE NZ REMARK 470 LYS C 219 CG CD CE NZ REMARK 470 ILE C 240 CG1 CG2 CD1 REMARK 470 LYS C 243 CG CD CE NZ REMARK 470 LYS C 253 CG CD CE NZ REMARK 470 LYS C 279 CG CD CE NZ REMARK 470 LYS C 281 CG CD CE NZ REMARK 470 ASP C 282 CG OD1 OD2 REMARK 470 ILE C 286 CG1 CG2 CD1 REMARK 470 LYS C 305 CG CD CE NZ REMARK 470 LYS C 323 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY C 206 OE2 GLU C 284 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 27.24 -148.48 REMARK 500 ALA A 73 -68.60 65.26 REMARK 500 ASP A 74 31.15 -97.78 REMARK 500 ALA A 84 104.08 -163.59 REMARK 500 ALA A 91 -132.29 49.03 REMARK 500 MET A 114 31.56 -143.88 REMARK 500 GLU A 117 -50.04 -139.93 REMARK 500 PHE A 118 -155.89 -90.94 REMARK 500 PHE A 128 -115.26 61.87 REMARK 500 PHE A 144 77.57 46.86 REMARK 500 GLU A 284 107.99 -58.91 REMARK 500 ASN A 293 111.67 -170.19 REMARK 500 ASN A 304 -156.94 -165.47 REMARK 500 ASP A 321 33.64 -95.37 REMARK 500 ASP B 74 30.70 -82.35 REMARK 500 ALA B 84 101.29 -167.76 REMARK 500 ALA B 91 -128.36 49.68 REMARK 500 MET B 114 39.16 -146.96 REMARK 500 GLU B 117 -55.27 -142.82 REMARK 500 PHE B 118 -158.73 -89.04 REMARK 500 PHE B 128 -113.32 60.13 REMARK 500 PHE B 144 71.38 47.62 REMARK 500 GLU B 183 27.54 49.45 REMARK 500 LEU B 205 99.55 75.61 REMARK 500 ALA B 237 -51.29 -121.77 REMARK 500 ILE B 286 -19.35 -143.37 REMARK 500 ASN B 293 118.64 -162.50 REMARK 500 ASN B 304 -160.18 -164.01 REMARK 500 GLU C 2 92.84 -67.56 REMARK 500 ASN C 5 86.15 -159.13 REMARK 500 SER C 24 -152.59 -148.96 REMARK 500 ALA C 84 97.75 -168.98 REMARK 500 ALA C 91 -127.70 46.05 REMARK 500 MET C 114 35.77 -153.44 REMARK 500 GLU C 117 -54.07 -140.87 REMARK 500 PHE C 118 -152.10 -93.81 REMARK 500 PHE C 128 -113.18 56.05 REMARK 500 PHE C 144 73.78 48.82 REMARK 500 ASN C 293 113.41 -165.75 REMARK 500 ASN C 304 -157.92 -156.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 71 OE1 REMARK 620 2 GLU A 71 OE2 54.4 REMARK 620 3 HIS B 82 ND1 78.3 95.9 REMARK 620 4 HIS B 132 ND1 172.9 119.1 100.5 REMARK 620 5 HOH B 501 O 106.8 124.9 133.9 79.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 82 ND1 REMARK 620 2 HIS A 132 ND1 95.6 REMARK 620 3 HOH A 501 O 109.5 105.0 REMARK 620 4 GLU C 71 OE2 105.5 108.1 128.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 71 OE2 REMARK 620 2 HOH B 502 O 112.6 REMARK 620 3 HIS C 82 ND1 100.1 106.8 REMARK 620 4 HIS C 132 ND1 119.4 118.3 94.9 REMARK 620 N 1 2 3 DBREF1 7FDY A 1 340 UNP A0A418U3R0_ECOLX DBREF2 7FDY A A0A418U3R0 10 349 DBREF1 7FDY B 1 340 UNP A0A418U3R0_ECOLX DBREF2 7FDY B A0A418U3R0 10 349 DBREF1 7FDY C 1 340 UNP A0A418U3R0_ECOLX DBREF2 7FDY C A0A418U3R0 10 349 SEQADV 7FDY MET A 0 UNP A0A418U3R INITIATING METHIONINE SEQADV 7FDY HIS A 82 UNP A0A418U3R ARG 91 CONFLICT SEQADV 7FDY HIS A 102 UNP A0A418U3R TYR 111 CONFLICT SEQADV 7FDY HIS A 132 UNP A0A418U3R ARG 141 CONFLICT SEQADV 7FDY MET B 0 UNP A0A418U3R INITIATING METHIONINE SEQADV 7FDY HIS B 82 UNP A0A418U3R ARG 91 CONFLICT SEQADV 7FDY HIS B 102 UNP A0A418U3R TYR 111 CONFLICT SEQADV 7FDY HIS B 132 UNP A0A418U3R ARG 141 CONFLICT SEQADV 7FDY MET C 0 UNP A0A418U3R INITIATING METHIONINE SEQADV 7FDY HIS C 82 UNP A0A418U3R ARG 91 CONFLICT SEQADV 7FDY HIS C 102 UNP A0A418U3R TYR 111 CONFLICT SEQADV 7FDY HIS C 132 UNP A0A418U3R ARG 141 CONFLICT SEQRES 1 A 341 MET ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP SEQRES 2 A 341 LEU TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS SEQRES 3 A 341 GLY ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET SEQRES 4 A 341 THR TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE SEQRES 5 A 341 ASN SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN SEQRES 6 A 341 PHE GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR SEQRES 7 A 341 GLY ASN LYS THR HIS LEU ALA PHE ALA GLY LEU LYS TYR SEQRES 8 A 341 ALA ASP VAL GLY SER PHE ASP TYR GLY ARG ASN HIS GLY SEQRES 9 A 341 VAL VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO SEQRES 10 A 341 GLU PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE SEQRES 11 A 341 VAL GLY HIS VAL GLY GLY VAL ALA THR TYR ARG ASN SER SEQRES 12 A 341 ASN PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL SEQRES 13 A 341 GLN TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SEQRES 14 A 341 SER ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU SEQRES 15 A 341 TYR GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA SEQRES 16 A 341 ASP ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN SEQRES 17 A 341 GLY LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR SEQRES 18 A 341 ASP ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU SEQRES 19 A 341 THR ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN SEQRES 20 A 341 THR SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU SEQRES 21 A 341 VAL ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER SEQRES 22 A 341 ILE ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY SEQRES 23 A 341 ILE GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY SEQRES 24 A 341 ALA THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL SEQRES 25 A 341 ASP TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU SEQRES 26 A 341 GLY VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL SEQRES 27 A 341 TYR GLN PHE SEQRES 1 B 341 MET ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP SEQRES 2 B 341 LEU TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS SEQRES 3 B 341 GLY ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET SEQRES 4 B 341 THR TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE SEQRES 5 B 341 ASN SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN SEQRES 6 B 341 PHE GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR SEQRES 7 B 341 GLY ASN LYS THR HIS LEU ALA PHE ALA GLY LEU LYS TYR SEQRES 8 B 341 ALA ASP VAL GLY SER PHE ASP TYR GLY ARG ASN HIS GLY SEQRES 9 B 341 VAL VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO SEQRES 10 B 341 GLU PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE SEQRES 11 B 341 VAL GLY HIS VAL GLY GLY VAL ALA THR TYR ARG ASN SER SEQRES 12 B 341 ASN PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL SEQRES 13 B 341 GLN TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SEQRES 14 B 341 SER ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU SEQRES 15 B 341 TYR GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA SEQRES 16 B 341 ASP ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN SEQRES 17 B 341 GLY LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR SEQRES 18 B 341 ASP ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU SEQRES 19 B 341 THR ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN SEQRES 20 B 341 THR SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU SEQRES 21 B 341 VAL ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER SEQRES 22 B 341 ILE ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY SEQRES 23 B 341 ILE GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY SEQRES 24 B 341 ALA THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL SEQRES 25 B 341 ASP TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU SEQRES 26 B 341 GLY VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL SEQRES 27 B 341 TYR GLN PHE SEQRES 1 C 341 MET ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS VAL ASP SEQRES 2 C 341 LEU TYR GLY LYS ALA VAL GLY LEU HIS TYR PHE SER LYS SEQRES 3 C 341 GLY ASN GLY GLU ASN SER TYR GLY GLY ASN GLY ASP MET SEQRES 4 C 341 THR TYR ALA ARG LEU GLY PHE LYS GLY GLU THR GLN ILE SEQRES 5 C 341 ASN SER ASP LEU THR GLY TYR GLY GLN TRP GLU TYR ASN SEQRES 6 C 341 PHE GLN GLY ASN ASN SER GLU GLY ALA ASP ALA GLN THR SEQRES 7 C 341 GLY ASN LYS THR HIS LEU ALA PHE ALA GLY LEU LYS TYR SEQRES 8 C 341 ALA ASP VAL GLY SER PHE ASP TYR GLY ARG ASN HIS GLY SEQRES 9 C 341 VAL VAL TYR ASP ALA LEU GLY TYR THR ASP MET LEU PRO SEQRES 10 C 341 GLU PHE GLY GLY ASP THR ALA TYR SER ASP ASP PHE PHE SEQRES 11 C 341 VAL GLY HIS VAL GLY GLY VAL ALA THR TYR ARG ASN SER SEQRES 12 C 341 ASN PHE PHE GLY LEU VAL ASP GLY LEU ASN PHE ALA VAL SEQRES 13 C 341 GLN TYR LEU GLY LYS ASN GLU ARG ASP THR ALA ARG ARG SEQRES 14 C 341 SER ASN GLY ASP GLY VAL GLY GLY SER ILE SER TYR GLU SEQRES 15 C 341 TYR GLU GLY PHE GLY ILE VAL GLY ALA TYR GLY ALA ALA SEQRES 16 C 341 ASP ARG THR ASN LEU GLN GLU ALA GLN PRO LEU GLY ASN SEQRES 17 C 341 GLY LYS LYS ALA GLU GLN TRP ALA THR GLY LEU LYS TYR SEQRES 18 C 341 ASP ALA ASN ASN ILE TYR LEU ALA ALA ASN TYR GLY GLU SEQRES 19 C 341 THR ARG ASN ALA THR PRO ILE THR ASN LYS PHE THR ASN SEQRES 20 C 341 THR SER GLY PHE ALA ASN LYS THR GLN ASP VAL LEU LEU SEQRES 21 C 341 VAL ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG PRO SER SEQRES 22 C 341 ILE ALA TYR THR LYS SER LYS ALA LYS ASP VAL GLU GLY SEQRES 23 C 341 ILE GLY ASP VAL ASP LEU VAL ASN TYR PHE GLU VAL GLY SEQRES 24 C 341 ALA THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL SEQRES 25 C 341 ASP TYR ILE ILE ASN GLN ILE ASP SER ASP ASN LYS LEU SEQRES 26 C 341 GLY VAL GLY SER ASP ASP THR VAL ALA VAL GLY ILE VAL SEQRES 27 C 341 TYR GLN PHE HET ZN A 401 1 HET ZN B 401 1 HET ZN C 401 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *3(H2 O) HELIX 1 AA1 ASN A 5 ASP A 7 5 3 HELIX 2 AA2 VAL A 105 GLY A 110 1 6 HELIX 3 AA3 SER A 142 VAL A 148 1 7 HELIX 4 AA4 THR A 197 ALA A 202 1 6 HELIX 5 AA5 VAL B 105 GLY B 110 1 6 HELIX 6 AA6 SER B 142 LEU B 147 1 6 HELIX 7 AA7 THR B 165 SER B 169 5 5 HELIX 8 AA8 THR B 197 GLN B 203 1 7 HELIX 9 AA9 GLY C 72 THR C 77 5 6 HELIX 10 AB1 GLY C 103 GLY C 110 1 8 HELIX 11 AB2 SER C 142 LEU C 147 1 6 HELIX 12 AB3 THR C 165 SER C 169 5 5 HELIX 13 AB4 THR C 197 GLN C 203 1 7 SHEET 1 AA119 GLU A 2 TYR A 4 0 SHEET 2 AA119 GLY A 36 ASP A 37 0 SHEET 3 AA119 TYR A 40 GLN A 50 0 SHEET 4 AA119 LEU A 55 GLN A 66 -1 O TYR A 63 N LEU A 43 SHEET 5 AA119 LYS A 80 TYR A 90 -1 O LYS A 89 N THR A 56 SHEET 6 AA119 GLY A 94 ASN A 101 -1 O ARG A 100 N ALA A 84 SHEET 7 AA119 VAL A 133 ASN A 141 -1 O ARG A 140 N SER A 95 SHEET 8 AA119 LEU A 151 LEU A 158 -1 O VAL A 155 N TYR A 139 SHEET 9 AA119 GLY A 173 TYR A 180 -1 O GLY A 173 N LEU A 158 SHEET 10 AA119 PHE A 185 ASP A 195 -1 O GLY A 189 N ILE A 178 SHEET 11 AA119 LYS A 210 ALA A 222 -1 O ALA A 211 N ALA A 194 SHEET 12 AA119 ILE A 225 ARG A 235 -1 O TYR A 231 N THR A 216 SHEET 13 AA119 LYS A 253 TYR A 263 -1 O GLN A 262 N TYR A 226 SHEET 14 AA119 LEU A 269 VAL A 283 -1 O LYS A 281 N LYS A 253 SHEET 15 AA119 GLY A 287 TYR A 302 -1 O GLY A 298 N SER A 272 SHEET 16 AA119 MET A 307 ASN A 316 -1 O ILE A 315 N PHE A 295 SHEET 17 AA119 THR A 331 PHE A 340 -1 O VAL A 337 N SER A 308 SHEET 18 AA119 ASN A 9 PHE A 23 -1 N ALA A 17 O TYR A 338 SHEET 19 AA119 GLY A 36 ASP A 37 -1 O GLY A 36 N TYR A 22 SHEET 1 AA2 2 PRO A 239 ASN A 242 0 SHEET 2 AA2 2 THR A 247 PHE A 250 -1 O THR A 247 N ASN A 242 SHEET 1 AA319 GLU B 2 ASN B 5 0 SHEET 2 AA319 GLY B 36 ASP B 37 0 SHEET 3 AA319 TYR B 40 GLN B 50 0 SHEET 4 AA319 LEU B 55 GLN B 66 -1 O PHE B 65 N ALA B 41 SHEET 5 AA319 LYS B 80 TYR B 90 -1 O LYS B 89 N THR B 56 SHEET 6 AA319 GLY B 94 HIS B 102 -1 O ARG B 100 N ALA B 84 SHEET 7 AA319 HIS B 132 ASN B 141 -1 O ARG B 140 N SER B 95 SHEET 8 AA319 LEU B 151 LEU B 158 -1 O VAL B 155 N TYR B 139 SHEET 9 AA319 GLY B 173 TYR B 182 -1 O GLY B 173 N LEU B 158 SHEET 10 AA319 PHE B 185 ASP B 195 -1 O PHE B 185 N TYR B 182 SHEET 11 AA319 LYS B 210 ALA B 222 -1 O ALA B 211 N ALA B 194 SHEET 12 AA319 ILE B 225 ARG B 235 -1 O TYR B 231 N THR B 216 SHEET 13 AA319 LYS B 253 TYR B 263 -1 O GLN B 262 N TYR B 226 SHEET 14 AA319 LEU B 269 VAL B 283 -1 O LYS B 281 N LYS B 253 SHEET 15 AA319 GLY B 287 TYR B 302 -1 O GLY B 287 N VAL B 283 SHEET 16 AA319 MET B 307 ASN B 316 -1 O ILE B 315 N PHE B 295 SHEET 17 AA319 THR B 331 PHE B 340 -1 O VAL B 337 N SER B 308 SHEET 18 AA319 ASN B 9 SER B 24 -1 N GLY B 15 O PHE B 340 SHEET 19 AA319 GLY B 36 ASP B 37 -1 O GLY B 36 N TYR B 22 SHEET 1 AA4 2 PRO B 239 ASN B 242 0 SHEET 2 AA4 2 THR B 247 PHE B 250 -1 O GLY B 249 N ILE B 240 SHEET 1 AA519 GLU C 2 LYS C 6 0 SHEET 2 AA519 GLY C 36 ASP C 37 0 SHEET 3 AA519 TYR C 40 THR C 49 0 SHEET 4 AA519 LEU C 55 GLN C 66 -1 O PHE C 65 N ALA C 41 SHEET 5 AA519 LYS C 80 TYR C 90 -1 O LYS C 89 N THR C 56 SHEET 6 AA519 GLY C 94 HIS C 102 -1 O ARG C 100 N ALA C 84 SHEET 7 AA519 HIS C 132 ASN C 141 -1 O ARG C 140 N SER C 95 SHEET 8 AA519 LEU C 151 LEU C 158 -1 O VAL C 155 N TYR C 139 SHEET 9 AA519 GLY C 173 TYR C 182 -1 O GLY C 173 N LEU C 158 SHEET 10 AA519 PHE C 185 ALA C 194 -1 O TYR C 191 N GLY C 176 SHEET 11 AA519 ALA C 211 ALA C 222 -1 O ALA C 211 N ALA C 194 SHEET 12 AA519 ILE C 225 ARG C 235 -1 O TYR C 231 N THR C 216 SHEET 13 AA519 LYS C 253 TYR C 263 -1 O ASP C 256 N GLY C 232 SHEET 14 AA519 LEU C 269 VAL C 283 -1 O LYS C 281 N LYS C 253 SHEET 15 AA519 GLY C 287 TYR C 302 -1 O GLY C 298 N SER C 272 SHEET 16 AA519 MET C 307 ASN C 316 -1 O ILE C 315 N PHE C 295 SHEET 17 AA519 THR C 331 PHE C 340 -1 O VAL C 337 N SER C 308 SHEET 18 AA519 ASN C 9 PHE C 23 -1 N ALA C 17 O TYR C 338 SHEET 19 AA519 GLY C 36 ASP C 37 -1 O GLY C 36 N TYR C 22 SHEET 1 AA6 2 PRO C 239 ASN C 242 0 SHEET 2 AA6 2 THR C 247 PHE C 250 -1 O GLY C 249 N ILE C 240 LINK OE1 GLU A 71 ZN ZN B 401 1555 1555 2.40 LINK OE2 GLU A 71 ZN ZN B 401 1555 1555 2.33 LINK ND1 HIS A 82 ZN ZN A 401 1555 1555 2.09 LINK ND1 HIS A 132 ZN ZN A 401 1555 1555 2.02 LINK ZN ZN A 401 O HOH A 501 1555 1555 2.41 LINK ZN ZN A 401 OE2 GLU C 71 1555 1555 2.25 LINK OE2 GLU B 71 ZN ZN C 401 1555 1555 2.41 LINK ND1 HIS B 82 ZN ZN B 401 1555 1555 2.09 LINK ND1 HIS B 132 ZN ZN B 401 1555 1555 2.08 LINK ZN ZN B 401 O HOH B 501 1555 1555 2.51 LINK O HOH B 502 ZN ZN C 401 1555 1555 2.48 LINK ND1 HIS C 82 ZN ZN C 401 1555 1555 2.20 LINK ND1 HIS C 132 ZN ZN C 401 1555 1555 2.25 CRYST1 128.600 140.390 110.860 90.00 120.01 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007776 0.000000 0.004491 0.00000 SCALE2 0.000000 0.007123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010417 0.00000