HEADER HYDROLASE 23-JUL-21 7FFP TITLE CRYSTAL STRUCTURE OF DI-PEPTIDASE-E FROM XENOPUS LAEVIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ASPARTYL DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASP-SPECIFIC DIPEPTIDASE,DIPEPTIDASE E; COMPND 5 EC: 3.4.13.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: AAD-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST50TR KEYWDS PEPTIDASE-E, ASPARTYL DIPEPTIDASE, ALPHA-ASPARTYL DIPEPTIDASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUMAR,R.SINGH,R.D.MAKDE REVDAT 3 29-NOV-23 7FFP 1 REMARK REVDAT 2 16-FEB-22 7FFP 1 JRNL REVDAT 1 08-SEP-21 7FFP 0 SPRSDE 08-SEP-21 7FFP 7C9D JRNL AUTH A.KUMAR,R.SINGH,B.GHOSH,R.D.MAKDE JRNL TITL CRYSTAL STRUCTURE OF ASPARTYL DIPEPTIDASE FROM XENOPUS JRNL TITL 2 LAEVIS REVEALED LIGAND BINDING INDUCED LOOP ORDERING AND JRNL TITL 3 CATALYTIC TRIAD ASSEMBLY. JRNL REF PROTEINS V. 90 299 2022 JRNL REFN ESSN 1097-0134 JRNL PMID 34431561 JRNL DOI 10.1002/PROT.26220 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2200 - 3.4400 0.99 2975 169 0.1579 0.1901 REMARK 3 2 3.4400 - 2.7300 1.00 2930 143 0.1879 0.2209 REMARK 3 3 2.7300 - 2.3900 1.00 2941 157 0.1939 0.2198 REMARK 3 4 2.3900 - 2.1700 1.00 2885 144 0.1940 0.2701 REMARK 3 5 2.1700 - 2.0100 1.00 2896 142 0.2170 0.2663 REMARK 3 6 2.0100 - 1.8900 0.98 2830 162 0.2198 0.2249 REMARK 3 7 1.8900 - 1.8000 0.78 2219 128 0.2261 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1051 -3.4042 22.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.1368 REMARK 3 T33: 0.1300 T12: 0.0438 REMARK 3 T13: -0.0188 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.0774 L22: 0.0098 REMARK 3 L33: 0.0154 L12: -0.0172 REMARK 3 L13: 0.0288 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: -0.1404 S13: 0.0360 REMARK 3 S21: 0.0440 S22: -0.0016 S23: -0.0154 REMARK 3 S31: -0.0881 S32: -0.0802 S33: -0.0085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6215 -3.6935 23.7303 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.1853 REMARK 3 T33: 0.1584 T12: 0.0840 REMARK 3 T13: -0.0401 T23: -0.0584 REMARK 3 L TENSOR REMARK 3 L11: 0.0304 L22: 0.0383 REMARK 3 L33: 0.0701 L12: 0.0216 REMARK 3 L13: -0.0108 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.0645 S13: 0.0995 REMARK 3 S21: 0.1570 S22: -0.0114 S23: -0.0741 REMARK 3 S31: -0.1641 S32: 0.0246 S33: -0.0668 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7589 -3.2925 19.4579 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.2441 REMARK 3 T33: 0.2466 T12: 0.0016 REMARK 3 T13: -0.0457 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.0017 L22: 0.0062 REMARK 3 L33: 0.0151 L12: 0.0012 REMARK 3 L13: 0.0005 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: 0.0471 S13: 0.0371 REMARK 3 S21: 0.1019 S22: -0.0393 S23: -0.0951 REMARK 3 S31: -0.0817 S32: 0.0640 S33: -0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3227 -16.1263 21.9516 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2162 REMARK 3 T33: 0.1703 T12: 0.1844 REMARK 3 T13: -0.0885 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 0.0113 L22: 0.0022 REMARK 3 L33: 0.0379 L12: 0.0004 REMARK 3 L13: -0.0148 L23: 0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0115 S13: -0.0283 REMARK 3 S21: -0.0099 S22: -0.0199 S23: -0.0070 REMARK 3 S31: 0.0777 S32: 0.0650 S33: -0.0710 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5556 -13.7797 17.0484 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.0911 REMARK 3 T33: 0.1427 T12: 0.0413 REMARK 3 T13: 0.0096 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.2715 L22: 0.2663 REMARK 3 L33: 0.2211 L12: 0.0202 REMARK 3 L13: 0.1382 L23: 0.1786 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.0648 S13: -0.1480 REMARK 3 S21: 0.1636 S22: 0.0809 S23: -0.0185 REMARK 3 S31: 0.2183 S32: 0.0766 S33: 0.1871 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6598 -3.9733 5.1229 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.1251 REMARK 3 T33: 0.1422 T12: 0.0575 REMARK 3 T13: 0.0055 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0393 L22: 0.0579 REMARK 3 L33: 0.2110 L12: 0.0127 REMARK 3 L13: 0.0541 L23: 0.1144 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: -0.0385 S13: 0.0573 REMARK 3 S21: -0.0568 S22: 0.0163 S23: 0.0786 REMARK 3 S31: -0.2176 S32: -0.2626 S33: -0.0894 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2528 -3.0290 17.9024 REMARK 3 T TENSOR REMARK 3 T11: 0.1944 T22: 0.2942 REMARK 3 T33: 0.1333 T12: 0.1311 REMARK 3 T13: 0.0048 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.0231 L22: 0.0050 REMARK 3 L33: 0.0167 L12: -0.0066 REMARK 3 L13: -0.0206 L23: 0.0069 REMARK 3 S TENSOR REMARK 3 S11: -0.0590 S12: -0.1088 S13: 0.0146 REMARK 3 S21: 0.0617 S22: 0.0605 S23: 0.0103 REMARK 3 S31: -0.0296 S32: -0.1161 S33: 0.0635 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9026 1.5808 16.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.5861 REMARK 3 T33: 0.2000 T12: 0.4232 REMARK 3 T13: 0.0280 T23: -0.1603 REMARK 3 L TENSOR REMARK 3 L11: 0.0261 L22: 0.0397 REMARK 3 L33: 0.0169 L12: -0.0028 REMARK 3 L13: -0.0191 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.0246 S13: 0.0136 REMARK 3 S21: 0.0255 S22: -0.0061 S23: 0.0111 REMARK 3 S31: -0.0618 S32: -0.0878 S33: -0.1092 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 4.2106 -2.3578 8.3576 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.1093 REMARK 3 T33: 0.1599 T12: 0.0156 REMARK 3 T13: -0.0101 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 7.1266 L22: 4.9109 REMARK 3 L33: 8.5357 L12: 3.1800 REMARK 3 L13: 7.7637 L23: 3.9658 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -0.1304 S13: 0.0051 REMARK 3 S21: -0.0034 S22: -0.0176 S23: -0.0151 REMARK 3 S31: 0.0046 S32: -0.0254 S33: -0.0158 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 41.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6A4S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS, 200 MM NANO3, 10 MM REMARK 280 CACL2, 30% PEG 3350, PH 7.0, MICROBATCH, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.33300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.33300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 241 REMARK 465 SER A 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 125 -106.40 58.71 REMARK 500 ALA A 151 -145.90 -121.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 124 OG REMARK 620 2 HOH A 456 O 91.5 REMARK 620 3 HOH A 469 O 143.4 123.5 REMARK 620 4 HOH A 526 O 90.8 159.1 60.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7C9B RELATED DB: PDB REMARK 900 7C9B IS LIGAND FREE STRUCTURE DBREF 7FFP A 1 242 UNP Q91642 PEPE_XENLA 1 242 SEQRES 1 A 242 MET MET THR MET ARG ARG HIS LEU LEU LEU VAL SER ASN SEQRES 2 A 242 SER THR LEU HIS GLY GLY GLY TYR LEU GLU HIS CYS GLN SEQRES 3 A 242 GLU HIS ILE LEU LYS PHE LEU GLY ALA GLN VAL LYS ARG SEQRES 4 A 242 VAL LEU PHE ILE PRO TYR ALA LEU HIS ASP ARG ASP ALA SEQRES 5 A 242 TYR ALA LYS THR ALA ARG GLN LYS PHE GLU ALA LEU GLY SEQRES 6 A 242 TYR GLY LEU ASP SER VAL HIS GLU SER PRO ASP PRO VAL SEQRES 7 A 242 ASP ALA VAL LYS LYS ALA GLU ALA ILE PHE ILE GLY GLY SEQRES 8 A 242 GLY ASN THR PHE ARG LEU LEU LYS ALA LEU TYR ASP ASN SEQRES 9 A 242 ASP LEU ILE ALA ALA ILE ARG LYS ARG VAL LEU GLU ASP SEQRES 10 A 242 GLY VAL PRO TYR ILE GLY SER SER ALA GLY THR ASN VAL SEQRES 11 A 242 ALA THR ILE SER ILE ASN THR THR ASN ASP MET PRO ILE SEQRES 12 A 242 VAL TYR PRO PRO SER LEU LYS ALA LEU GLU LEU VAL PRO SEQRES 13 A 242 PHE ASN ILE ASN PRO HIS TYR LEU ASP PRO ASP GLY ASN SEQRES 14 A 242 SER LYS HIS MET GLY GLU THR ARG GLU GLN ARG ILE THR SEQRES 15 A 242 GLN TYR HIS GLU GLU HIS ASP THR PRO PRO VAL LEU GLY SEQRES 16 A 242 LEU ARG GLU GLY CYS PHE LEU LEU VAL GLU GLY ASP LYS SEQRES 17 A 242 ALA THR LEU LEU GLY ILE THR ARG ALA ARG LEU PHE LEU SEQRES 18 A 242 ARG GLY LYS ASN PRO THR GLU HIS GLU PRO GLY HIS ASP SEQRES 19 A 242 PHE SER PHE LEU LEU GLY HIS SER HET ASP A 301 9 HET CA A 302 1 HETNAM ASP ASPARTIC ACID HETNAM CA CALCIUM ION FORMUL 2 ASP C4 H7 N O4 FORMUL 3 CA CA 2+ FORMUL 4 HOH *191(H2 O) HELIX 1 AA1 LEU A 22 HIS A 24 5 3 HELIX 2 AA2 CYS A 25 GLY A 34 1 10 HELIX 3 AA3 ASP A 49 LEU A 64 1 16 HELIX 4 AA4 HIS A 72 SER A 74 5 3 HELIX 5 AA5 ASP A 76 ALA A 84 1 9 HELIX 6 AA6 ASN A 93 ASN A 104 1 12 HELIX 7 AA7 LEU A 106 GLU A 116 1 11 HELIX 8 AA8 SER A 125 VAL A 130 1 6 HELIX 9 AA9 THR A 176 HIS A 185 1 10 HELIX 10 AB1 PHE A 235 LEU A 239 5 5 SHEET 1 AA1 7 GLY A 67 SER A 70 0 SHEET 2 AA1 7 ARG A 39 ILE A 43 1 N PHE A 42 O ASP A 69 SHEET 3 AA1 7 ILE A 87 ILE A 89 1 O PHE A 88 N LEU A 41 SHEET 4 AA1 7 TYR A 121 SER A 124 1 O ILE A 122 N ILE A 87 SHEET 5 AA1 7 HIS A 7 VAL A 11 1 N VAL A 11 O GLY A 123 SHEET 6 AA1 7 CYS A 200 GLU A 205 -1 O LEU A 202 N LEU A 10 SHEET 7 AA1 7 LYS A 208 GLY A 213 -1 O LEU A 212 N PHE A 201 SHEET 1 AA2 4 ASN A 158 TYR A 163 0 SHEET 2 AA2 4 VAL A 193 ARG A 197 1 O LEU A 194 N ASN A 160 SHEET 3 AA2 4 ALA A 217 PHE A 220 -1 O PHE A 220 N VAL A 193 SHEET 4 AA2 4 THR A 227 HIS A 229 -1 O THR A 227 N LEU A 219 LINK OG SER A 124 CA CA A 302 1555 1555 3.14 LINK CA CA A 302 O HOH A 456 1555 1555 2.99 LINK CA CA A 302 O HOH A 469 1555 1555 3.07 LINK CA CA A 302 O HOH A 526 1555 1555 2.95 CRYST1 82.666 42.150 75.680 90.00 118.24 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012097 0.000000 0.006498 0.00000 SCALE2 0.000000 0.023725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014999 0.00000