HEADER BIOSYNTHETIC PROTEIN 29-JUL-21 7FH3 TITLE CRYSTAL STRUCTURE OF THE ATP SULFURYLASE DOMAIN OF HUMAN PAPSS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE COMPND 3 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: SULFATE ADENYLYLTRANSFERASE,ATP SULFURYLASE; COMPND 6 SYNONYM: ATP SULFURYLASE,PAPS SYNTHASE 2,PAPSS 2,SULFURYLASE KINASE COMPND 7 2,SK 2,SK2; COMPND 8 EC: 2.7.7.4,2.7.1.25; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAPSS2, ATPSK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP SULFURYLASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,L.ZHANG,L.ZHANG REVDAT 3 29-NOV-23 7FH3 1 REMARK REVDAT 2 16-FEB-22 7FH3 1 JRNL REVDAT 1 01-DEC-21 7FH3 0 JRNL AUTH P.ZHANG,L.ZHANG,Z.HOU,H.LIN,H.GAO,L.ZHANG JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE RECOGNITION MECHANISM OF JRNL TITL 2 ATP-SULFURYLASE DOMAIN OF HUMAN PAPS SYNTHASE 2. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 586 1 2022 JRNL REFN ESSN 1090-2104 JRNL PMID 34818583 JRNL DOI 10.1016/J.BBRC.2021.11.062 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 86380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 4441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2700 - 5.6000 0.99 2751 160 0.1735 0.1744 REMARK 3 2 5.6000 - 4.4500 1.00 2782 155 0.1514 0.1387 REMARK 3 3 4.4500 - 3.8900 1.00 2799 141 0.1359 0.1872 REMARK 3 4 3.8900 - 3.5300 1.00 2773 164 0.1456 0.1653 REMARK 3 5 3.5300 - 3.2800 1.00 2801 127 0.1627 0.2095 REMARK 3 6 3.2800 - 3.0800 1.00 2775 183 0.1648 0.2063 REMARK 3 7 3.0800 - 2.9300 1.00 2790 138 0.1670 0.2050 REMARK 3 8 2.9300 - 2.8000 1.00 2777 138 0.1645 0.1683 REMARK 3 9 2.8000 - 2.6900 1.00 2820 125 0.1744 0.1897 REMARK 3 10 2.6900 - 2.6000 1.00 2794 149 0.1595 0.2168 REMARK 3 11 2.6000 - 2.5200 1.00 2767 170 0.1615 0.1906 REMARK 3 12 2.5200 - 2.4500 1.00 2781 154 0.1686 0.2272 REMARK 3 13 2.4500 - 2.3800 1.00 2791 129 0.1707 0.2101 REMARK 3 14 2.3800 - 2.3300 1.00 2769 153 0.1740 0.2142 REMARK 3 15 2.3300 - 2.2700 1.00 2749 177 0.1769 0.2155 REMARK 3 16 2.2700 - 2.2200 1.00 2772 162 0.1681 0.2263 REMARK 3 17 2.2200 - 2.1800 1.00 2728 163 0.1763 0.2190 REMARK 3 18 2.1800 - 2.1400 0.99 2805 127 0.1808 0.2122 REMARK 3 19 2.1400 - 2.1000 0.99 2745 155 0.1773 0.2022 REMARK 3 20 2.1000 - 2.0700 1.00 2793 164 0.1781 0.1970 REMARK 3 21 2.0700 - 2.0300 1.00 2768 137 0.1775 0.2162 REMARK 3 22 2.0300 - 2.0000 0.99 2737 147 0.1829 0.2307 REMARK 3 23 2.0000 - 1.9700 0.99 2788 116 0.1910 0.2280 REMARK 3 24 1.9700 - 1.9400 0.98 2752 136 0.1918 0.2573 REMARK 3 25 1.9400 - 1.9200 0.97 2679 165 0.1976 0.2440 REMARK 3 26 1.9200 - 1.8900 0.97 2716 149 0.2043 0.2532 REMARK 3 27 1.8900 - 1.8700 0.95 2612 175 0.2165 0.2661 REMARK 3 28 1.8700 - 1.8500 0.95 2625 133 0.2360 0.3018 REMARK 3 29 1.8500 - 1.8200 0.91 2585 131 0.2527 0.2641 REMARK 3 30 1.8200 - 1.8000 0.78 2115 118 0.2553 0.2805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1X6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM (NH4)2SO4, 0.1M HEPES, PH7.5, REMARK 280 25% PEG 3350, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.92950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.92082 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.42967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 89.92950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 51.92082 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.42967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 89.92950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 51.92082 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.42967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 103.84164 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.85933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 103.84164 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.85933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 103.84164 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.85933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -152.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 613 REMARK 465 ASN A 614 REMARK 465 LYS B 613 REMARK 465 ASN B 614 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1108 O HOH A 1133 1.95 REMARK 500 O HOH B 1123 O HOH B 1135 2.00 REMARK 500 O HOH B 820 O HOH B 1006 2.02 REMARK 500 O HOH B 897 O HOH B 997 2.04 REMARK 500 O LEU A 286 O HOH A 801 2.04 REMARK 500 O TRP A 264 NH2 ARG A 498 2.04 REMARK 500 O HOH A 904 O HOH A 916 2.05 REMARK 500 O HOH A 915 O HOH A 1156 2.05 REMARK 500 ND2 ASN A 412 O HOH A 802 2.07 REMARK 500 ND2 ASN B 412 O HOH B 801 2.08 REMARK 500 OH TYR B 608 O HOH B 802 2.09 REMARK 500 OG SER B 537 O HOH B 803 2.09 REMARK 500 O HOH B 838 O HOH B 1150 2.09 REMARK 500 O HOH A 861 O HOH A 1115 2.10 REMARK 500 O HOH A 825 O HOH A 1015 2.10 REMARK 500 O HOH A 1108 O HOH A 1158 2.13 REMARK 500 O HOH B 934 O HOH B 1151 2.14 REMARK 500 O HOH A 1166 O HOH A 1177 2.14 REMARK 500 O HOH B 944 O HOH B 1103 2.14 REMARK 500 O HOH B 1085 O HOH B 1088 2.14 REMARK 500 O HOH B 825 O HOH B 1007 2.15 REMARK 500 OH TYR A 608 O HOH A 803 2.15 REMARK 500 O HOH B 1150 O HOH B 1172 2.16 REMARK 500 O HOH A 989 O HOH A 1088 2.16 REMARK 500 O HOH A 1011 O HOH A 1165 2.17 REMARK 500 O HOH A 1058 O HOH A 1064 2.17 REMARK 500 O HOH A 907 O HOH A 1083 2.18 REMARK 500 O HOH B 1056 O HOH B 1087 2.18 REMARK 500 O HOH A 919 O HOH A 940 2.18 REMARK 500 O HOH B 931 O HOH B 1096 2.19 REMARK 500 OE2 GLU B 240 O HOH B 804 2.19 REMARK 500 O HOH A 1097 O HOH B 1088 2.19 REMARK 500 O HOH B 917 O HOH B 1181 2.19 REMARK 500 O HOH A 1140 O HOH A 1165 2.19 REMARK 500 O HOH A 919 O HOH A 1076 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1159 O HOH B 1128 9464 2.06 REMARK 500 O HOH A 804 O HOH A 1020 2675 2.08 REMARK 500 O HOH A 1127 O HOH B 1157 2674 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 288 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP B 288 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 288 145.27 -174.01 REMARK 500 ARG A 411 12.03 -141.65 REMARK 500 GLU A 521 -48.59 64.01 REMARK 500 MET B 294 101.64 -160.99 REMARK 500 GLU B 521 -70.13 69.08 REMARK 500 LYS B 523 11.74 84.05 REMARK 500 ALA B 558 -75.89 -59.22 REMARK 500 LYS B 559 -161.45 -69.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1187 DISTANCE = 6.67 ANGSTROMS DBREF 7FH3 A 223 614 UNP O95340 PAPS2_HUMAN 223 614 DBREF 7FH3 B 223 614 UNP O95340 PAPS2_HUMAN 223 614 SEQADV 7FH3 SER A 222 UNP O95340 EXPRESSION TAG SEQADV 7FH3 SER B 222 UNP O95340 EXPRESSION TAG SEQRES 1 A 393 SER ASP ILE HIS GLU LEU PHE VAL PRO GLU ASN LYS LEU SEQRES 2 A 393 ASP HIS VAL ARG ALA GLU ALA GLU THR LEU PRO SER LEU SEQRES 3 A 393 SER ILE THR LYS LEU ASP LEU GLN TRP VAL GLN VAL LEU SEQRES 4 A 393 SER GLU GLY TRP ALA THR PRO LEU LYS GLY PHE MET ARG SEQRES 5 A 393 GLU LYS GLU TYR LEU GLN VAL MET HIS PHE ASP THR LEU SEQRES 6 A 393 LEU ASP ASP GLY VAL ILE ASN MET SER ILE PRO ILE VAL SEQRES 7 A 393 LEU PRO VAL SER ALA GLU ASP LYS THR ARG LEU GLU GLY SEQRES 8 A 393 CYS SER LYS PHE VAL LEU ALA HIS GLY GLY ARG ARG VAL SEQRES 9 A 393 ALA ILE LEU ARG ASP ALA GLU PHE TYR GLU HIS ARG LYS SEQRES 10 A 393 GLU GLU ARG CYS SER ARG VAL TRP GLY THR THR CYS THR SEQRES 11 A 393 LYS HIS PRO HIS ILE LYS MET VAL MET GLU SER GLY ASP SEQRES 12 A 393 TRP LEU VAL GLY GLY ASP LEU GLN VAL LEU GLU LYS ILE SEQRES 13 A 393 ARG TRP ASN ASP GLY LEU ASP GLN TYR ARG LEU THR PRO SEQRES 14 A 393 LEU GLU LEU LYS GLN LYS CYS LYS GLU MET ASN ALA ASP SEQRES 15 A 393 ALA VAL PHE ALA PHE GLN LEU ARG ASN PRO VAL HIS ASN SEQRES 16 A 393 GLY HIS ALA LEU LEU MET GLN ASP THR ARG ARG ARG LEU SEQRES 17 A 393 LEU GLU ARG GLY TYR LYS HIS PRO VAL LEU LEU LEU HIS SEQRES 18 A 393 PRO LEU GLY GLY TRP THR LYS ASP ASP ASP VAL PRO LEU SEQRES 19 A 393 ASP TRP ARG MET LYS GLN HIS ALA ALA VAL LEU GLU GLU SEQRES 20 A 393 GLY VAL LEU ASP PRO LYS SER THR ILE VAL ALA ILE PHE SEQRES 21 A 393 PRO SER PRO MET LEU TYR ALA GLY PRO THR GLU VAL GLN SEQRES 22 A 393 TRP HIS CYS ARG SER ARG MET ILE ALA GLY ALA ASN PHE SEQRES 23 A 393 TYR ILE VAL GLY ARG ASP PRO ALA GLY MET PRO HIS PRO SEQRES 24 A 393 GLU THR LYS LYS ASP LEU TYR GLU PRO THR HIS GLY GLY SEQRES 25 A 393 LYS VAL LEU SER MET ALA PRO GLY LEU THR SER VAL GLU SEQRES 26 A 393 ILE ILE PRO PHE ARG VAL ALA ALA TYR ASN LYS ALA LYS SEQRES 27 A 393 LYS ALA MET ASP PHE TYR ASP PRO ALA ARG HIS ASN GLU SEQRES 28 A 393 PHE ASP PHE ILE SER GLY THR ARG MET ARG LYS LEU ALA SEQRES 29 A 393 ARG GLU GLY GLU ASN PRO PRO ASP GLY PHE MET ALA PRO SEQRES 30 A 393 LYS ALA TRP LYS VAL LEU THR ASP TYR TYR ARG SER LEU SEQRES 31 A 393 GLU LYS ASN SEQRES 1 B 393 SER ASP ILE HIS GLU LEU PHE VAL PRO GLU ASN LYS LEU SEQRES 2 B 393 ASP HIS VAL ARG ALA GLU ALA GLU THR LEU PRO SER LEU SEQRES 3 B 393 SER ILE THR LYS LEU ASP LEU GLN TRP VAL GLN VAL LEU SEQRES 4 B 393 SER GLU GLY TRP ALA THR PRO LEU LYS GLY PHE MET ARG SEQRES 5 B 393 GLU LYS GLU TYR LEU GLN VAL MET HIS PHE ASP THR LEU SEQRES 6 B 393 LEU ASP ASP GLY VAL ILE ASN MET SER ILE PRO ILE VAL SEQRES 7 B 393 LEU PRO VAL SER ALA GLU ASP LYS THR ARG LEU GLU GLY SEQRES 8 B 393 CYS SER LYS PHE VAL LEU ALA HIS GLY GLY ARG ARG VAL SEQRES 9 B 393 ALA ILE LEU ARG ASP ALA GLU PHE TYR GLU HIS ARG LYS SEQRES 10 B 393 GLU GLU ARG CYS SER ARG VAL TRP GLY THR THR CYS THR SEQRES 11 B 393 LYS HIS PRO HIS ILE LYS MET VAL MET GLU SER GLY ASP SEQRES 12 B 393 TRP LEU VAL GLY GLY ASP LEU GLN VAL LEU GLU LYS ILE SEQRES 13 B 393 ARG TRP ASN ASP GLY LEU ASP GLN TYR ARG LEU THR PRO SEQRES 14 B 393 LEU GLU LEU LYS GLN LYS CYS LYS GLU MET ASN ALA ASP SEQRES 15 B 393 ALA VAL PHE ALA PHE GLN LEU ARG ASN PRO VAL HIS ASN SEQRES 16 B 393 GLY HIS ALA LEU LEU MET GLN ASP THR ARG ARG ARG LEU SEQRES 17 B 393 LEU GLU ARG GLY TYR LYS HIS PRO VAL LEU LEU LEU HIS SEQRES 18 B 393 PRO LEU GLY GLY TRP THR LYS ASP ASP ASP VAL PRO LEU SEQRES 19 B 393 ASP TRP ARG MET LYS GLN HIS ALA ALA VAL LEU GLU GLU SEQRES 20 B 393 GLY VAL LEU ASP PRO LYS SER THR ILE VAL ALA ILE PHE SEQRES 21 B 393 PRO SER PRO MET LEU TYR ALA GLY PRO THR GLU VAL GLN SEQRES 22 B 393 TRP HIS CYS ARG SER ARG MET ILE ALA GLY ALA ASN PHE SEQRES 23 B 393 TYR ILE VAL GLY ARG ASP PRO ALA GLY MET PRO HIS PRO SEQRES 24 B 393 GLU THR LYS LYS ASP LEU TYR GLU PRO THR HIS GLY GLY SEQRES 25 B 393 LYS VAL LEU SER MET ALA PRO GLY LEU THR SER VAL GLU SEQRES 26 B 393 ILE ILE PRO PHE ARG VAL ALA ALA TYR ASN LYS ALA LYS SEQRES 27 B 393 LYS ALA MET ASP PHE TYR ASP PRO ALA ARG HIS ASN GLU SEQRES 28 B 393 PHE ASP PHE ILE SER GLY THR ARG MET ARG LYS LEU ALA SEQRES 29 B 393 ARG GLU GLY GLU ASN PRO PRO ASP GLY PHE MET ALA PRO SEQRES 30 B 393 LYS ALA TRP LYS VAL LEU THR ASP TYR TYR ARG SER LEU SEQRES 31 B 393 GLU LYS ASN HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET BGC A 708 12 HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 B 703 5 HET SO4 B 704 5 HET SO4 B 705 5 HET BGC B 706 12 HETNAM SO4 SULFATE ION HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 SO4 12(O4 S 2-) FORMUL 10 BGC 2(C6 H12 O6) FORMUL 17 HOH *779(H2 O) HELIX 1 AA1 PRO A 230 ASN A 232 5 3 HELIX 2 AA2 LYS A 233 GLU A 242 1 10 HELIX 3 AA3 THR A 250 GLU A 262 1 13 HELIX 4 AA4 ARG A 273 ASP A 284 1 12 HELIX 5 AA5 SER A 303 GLU A 311 1 9 HELIX 6 AA6 ARG A 337 GLY A 347 1 11 HELIX 7 AA7 HIS A 353 GLU A 361 1 9 HELIX 8 AA8 LEU A 383 ARG A 387 5 5 HELIX 9 AA9 THR A 389 MET A 400 1 12 HELIX 10 AB1 HIS A 415 ARG A 432 1 18 HELIX 11 AB2 PRO A 454 GLU A 468 1 15 HELIX 12 AB3 ASP A 472 LYS A 474 5 3 HELIX 13 AB4 ALA A 488 ALA A 503 1 16 HELIX 14 AB5 THR A 530 ALA A 539 1 10 HELIX 15 AB6 ASP A 566 ASN A 571 5 6 HELIX 16 AB7 SER A 577 GLU A 587 1 11 HELIX 17 AB8 ALA A 597 LEU A 611 1 15 HELIX 18 AB9 PRO B 230 ASN B 232 5 3 HELIX 19 AC1 LYS B 233 GLU B 242 1 10 HELIX 20 AC2 THR B 250 GLU B 262 1 13 HELIX 21 AC3 ARG B 273 ASP B 284 1 12 HELIX 22 AC4 SER B 303 GLU B 311 1 9 HELIX 23 AC5 ARG B 337 GLY B 347 1 11 HELIX 24 AC6 HIS B 353 GLU B 361 1 9 HELIX 25 AC7 LEU B 383 ARG B 387 5 5 HELIX 26 AC8 THR B 389 MET B 400 1 12 HELIX 27 AC9 HIS B 415 ARG B 432 1 18 HELIX 28 AD1 PRO B 454 GLU B 468 1 15 HELIX 29 AD2 ASP B 472 LYS B 474 5 3 HELIX 30 AD3 ALA B 488 ALA B 503 1 16 HELIX 31 AD4 THR B 530 ALA B 539 1 10 HELIX 32 AD5 ASP B 566 ASN B 571 5 6 HELIX 33 AD6 SER B 577 GLU B 587 1 11 HELIX 34 AD7 ALA B 597 LEU B 611 1 15 SHEET 1 AA1 5 SER A 246 SER A 248 0 SHEET 2 AA1 5 LYS A 315 HIS A 320 1 O VAL A 317 N LEU A 247 SHEET 3 AA1 5 ARG A 323 GLU A 335 -1 O LEU A 328 N PHE A 316 SHEET 4 AA1 5 TRP A 365 VAL A 373 -1 O ASP A 370 N ARG A 329 SHEET 5 AA1 5 LEU A 300 VAL A 302 -1 N VAL A 302 O TRP A 365 SHEET 1 AA2 5 THR A 476 VAL A 478 0 SHEET 2 AA2 5 PRO A 437 PRO A 443 1 N LEU A 439 O ILE A 477 SHEET 3 AA2 5 ALA A 404 LEU A 410 1 N PHE A 406 O LEU A 440 SHEET 4 AA2 5 PHE A 507 ILE A 509 1 O ILE A 509 N ALA A 407 SHEET 5 AA2 5 GLU A 546 ILE A 548 1 O ILE A 548 N TYR A 508 SHEET 1 AA3 3 ALA A 561 PHE A 564 0 SHEET 2 AA3 3 ALA A 553 ASN A 556 -1 N ASN A 556 O ALA A 561 SHEET 3 AA3 3 PHE A 573 ASP A 574 -1 O ASP A 574 N TYR A 555 SHEET 1 AA4 5 SER B 246 SER B 248 0 SHEET 2 AA4 5 LYS B 315 HIS B 320 1 O ALA B 319 N LEU B 247 SHEET 3 AA4 5 ARG B 323 GLU B 335 -1 O LEU B 328 N PHE B 316 SHEET 4 AA4 5 TRP B 365 VAL B 373 -1 O ASP B 370 N ARG B 329 SHEET 5 AA4 5 LEU B 300 VAL B 302 -1 N VAL B 302 O TRP B 365 SHEET 1 AA5 5 THR B 476 VAL B 478 0 SHEET 2 AA5 5 PRO B 437 PRO B 443 1 N LEU B 439 O ILE B 477 SHEET 3 AA5 5 ALA B 404 LEU B 410 1 N PHE B 406 O LEU B 440 SHEET 4 AA5 5 PHE B 507 ILE B 509 1 O ILE B 509 N ALA B 407 SHEET 5 AA5 5 GLU B 546 ILE B 548 1 O ILE B 548 N TYR B 508 SHEET 1 AA6 3 MET B 562 PHE B 564 0 SHEET 2 AA6 3 ALA B 553 ASN B 556 -1 N ALA B 554 O ASP B 563 SHEET 3 AA6 3 PHE B 573 ASP B 574 -1 O ASP B 574 N TYR B 555 CISPEP 1 THR A 266 PRO A 267 0 3.51 CISPEP 2 THR B 266 PRO B 267 0 7.25 CRYST1 179.859 179.859 79.289 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005560 0.003210 0.000000 0.00000 SCALE2 0.000000 0.006420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012612 0.00000