HEADER MEMBRANE PROTEIN 29-JUL-21 7FHQ TITLE SOLUTION STRUCTURE OF THE PATHOGENIC MUTANT G131V OF HUMAN PRION TITLE 2 PROTEIN (91-231) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRP,ASCR,PRP27-30,PRP33-35C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRNP, ALTPRP, PRIP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ZHANG,D.LIN REVDAT 2 14-JUN-23 7FHQ 1 REMARK REVDAT 1 06-JUL-22 7FHQ 0 JRNL AUTH H.ZHANG,D.LIN JRNL TITL SOLUTION STRUCTURE OF THE PATHOGENIC MUTANT G131V OF HUMAN JRNL TITL 2 PRION PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS ARIA2.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-21. REMARK 100 THE DEPOSITION ID IS D_1300023430. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10 % V/V [U-100% 2H] D2O, 90 % REMARK 210 V/V H2O, 20 MM SODIUM ACETATE, REMARK 210 0.02 % W/V SODIUM AZIDE, 0.65 MM REMARK 210 [U-99% 13C; U-99% 15N] HUPRP REMARK 210 G131V, 90% H2O/10% D2O; 10 % V/V REMARK 210 [U-100% 2H] D2O, 90 % V/V H2O, REMARK 210 20 MM SODIUM ACETATE, 0.02 % W/V REMARK 210 SODIUM AZIDE, 0.65 MM [U-99% 15N] REMARK 210 HUPRP G131V, 90% H2O/10% D2O; REMARK 210 100 % V/V [U-100% 2H] D2O, 20 MM REMARK 210 SODIUM ACETATE, 0.02 % W/V REMARK 210 SODIUM AZIDE, 0.65 MM [U-99% 13C; REMARK 210 U-99% 15N] HUPRP G131V, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D (HB)CB(CGCD)HD; 2D (HB) REMARK 210 CB(CGCDCE)HE; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D C(CO) REMARK 210 NH; 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRFAM-SPARKY 1.4.7, REMARK 210 CNS ARIA2.3 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 97 -14.24 68.04 REMARK 500 1 GLN A 98 -44.05 -175.56 REMARK 500 1 TRP A 99 -37.46 -168.03 REMARK 500 1 ASN A 100 79.33 -174.51 REMARK 500 1 LYS A 101 65.63 -155.73 REMARK 500 1 SER A 103 -13.02 -163.96 REMARK 500 1 PRO A 105 47.43 -82.19 REMARK 500 1 THR A 107 129.17 65.90 REMARK 500 1 MET A 109 -169.34 -121.31 REMARK 500 1 ALA A 113 11.12 -161.21 REMARK 500 1 ALA A 116 95.05 -161.60 REMARK 500 1 ALA A 117 -70.81 -110.46 REMARK 500 1 ALA A 120 -39.72 -151.38 REMARK 500 1 VAL A 121 -167.36 -66.86 REMARK 500 1 LEU A 125 -78.93 -78.66 REMARK 500 1 TYR A 128 3.84 -168.35 REMARK 500 1 VAL A 131 -166.88 -128.97 REMARK 500 1 ARG A 164 131.38 -176.20 REMARK 500 1 ASP A 167 20.19 -164.15 REMARK 500 1 LYS A 194 13.98 -162.14 REMARK 500 2 GLN A 98 62.41 61.72 REMARK 500 2 TRP A 99 146.55 66.47 REMARK 500 2 MET A 112 35.83 -96.67 REMARK 500 2 ALA A 116 -165.04 -121.70 REMARK 500 2 ALA A 120 -22.17 -144.89 REMARK 500 2 LEU A 125 -93.92 -74.16 REMARK 500 2 MET A 129 -64.75 -149.04 REMARK 500 2 PRO A 137 166.73 -47.05 REMARK 500 2 ASP A 167 20.35 -147.50 REMARK 500 3 THR A 95 -60.88 -140.42 REMARK 500 3 GLN A 98 -38.24 -168.32 REMARK 500 3 ASN A 100 92.10 -64.51 REMARK 500 3 PRO A 102 99.01 -57.56 REMARK 500 3 PRO A 105 81.14 -62.92 REMARK 500 3 HIS A 111 -40.62 -133.83 REMARK 500 3 ALA A 120 -51.44 -126.88 REMARK 500 3 LEU A 125 -87.71 -66.45 REMARK 500 3 MET A 129 -177.66 -62.35 REMARK 500 3 LEU A 130 101.25 60.54 REMARK 500 3 MET A 134 173.85 -57.78 REMARK 500 3 ARG A 164 126.38 -171.49 REMARK 500 3 LYS A 194 21.63 -143.86 REMARK 500 3 ARG A 228 38.87 -96.47 REMARK 500 4 SER A 97 -70.92 70.30 REMARK 500 4 GLN A 98 55.45 -142.30 REMARK 500 4 TRP A 99 92.89 57.19 REMARK 500 4 ASN A 100 -170.57 56.06 REMARK 500 4 ALA A 117 -46.84 -132.23 REMARK 500 4 LEU A 125 -71.41 -62.81 REMARK 500 4 TYR A 128 111.99 60.60 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50544 RELATED DB: BMRB DBREF 7FHQ A 91 231 UNP P04156 PRIO_HUMAN 91 231 SEQADV 7FHQ MET A 90 UNP P04156 INITIATING METHIONINE SEQADV 7FHQ VAL A 131 UNP P04156 GLY 131 VARIANT SEQRES 1 A 142 MET GLN GLY GLY GLY THR HIS SER GLN TRP ASN LYS PRO SEQRES 2 A 142 SER LYS PRO LYS THR ASN MET LYS HIS MET ALA GLY ALA SEQRES 3 A 142 ALA ALA ALA GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR SEQRES 4 A 142 MET LEU VAL SER ALA MET SER ARG PRO ILE ILE HIS PHE SEQRES 5 A 142 GLY SER ASP TYR GLU ASP ARG TYR TYR ARG GLU ASN MET SEQRES 6 A 142 HIS ARG TYR PRO ASN GLN VAL TYR TYR ARG PRO MET ASP SEQRES 7 A 142 GLU TYR SER ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL SEQRES 8 A 142 ASN ILE THR ILE LYS GLN HIS THR VAL THR THR THR THR SEQRES 9 A 142 LYS GLY GLU ASN PHE THR GLU THR ASP VAL LYS MET MET SEQRES 10 A 142 GLU ARG VAL VAL GLU GLN MET CYS ILE THR GLN TYR GLU SEQRES 11 A 142 ARG GLU SER GLN ALA TYR TYR GLN ARG GLY SER SER HELIX 1 AA1 GLU A 146 ARG A 151 1 6 HELIX 2 AA2 ASN A 173 THR A 183 1 11 HELIX 3 AA3 ILE A 184 THR A 190 1 7 HELIX 4 AA4 THR A 191 LYS A 194 5 4 HELIX 5 AA5 THR A 199 ARG A 228 1 30 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1