HEADER MEMBRANE PROTEIN 04-AUG-21 7FJM TITLE CRYO EM STRUCTURE OF LYSOSOMAL ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYAMINE-TRANSPORTING ATPASE 13A2; COMPND 3 CHAIN: A; COMPND 4 EC: 7.6.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATP13A2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS LYSOSOMAL ATPASE TRANSPORTER, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.S.ZHANG REVDAT 2 23-OCT-24 7FJM 1 REMARK REVDAT 1 08-MAR-23 7FJM 0 JRNL AUTH X.CHEN,M.ZHOU,S.ZHANG,J.YIN,P.ZHANG,X.XUAN,P.WANG,Z.LIU, JRNL AUTH 2 B.ZHOU,M.YANG JRNL TITL CRYO-EM STRUCTURES AND TRANSPORT MECHANISM OF HUMAN P5B TYPE JRNL TITL 2 ATPASE ATP13A2. JRNL REF CELL DISCOV V. 7 106 2021 JRNL REFN ESSN 2056-5968 JRNL PMID 34728622 JRNL DOI 10.1038/S41421-021-00334-6 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 153193 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7FJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023744. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PLASMA MEMBAREN CHANNEL REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 PRO A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 PRO A 13 REMARK 465 THR A 14 REMARK 465 GLY A 15 REMARK 465 TYR A 16 REMARK 465 GLY A 17 REMARK 465 THR A 18 REMARK 465 LEU A 19 REMARK 465 THR A 20 REMARK 465 ILE A 21 REMARK 465 GLY A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 VAL A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 VAL A 35 REMARK 465 ARG A 36 REMARK 465 LEU A 37 REMARK 465 SER A 38 REMARK 465 GLY A 39 REMARK 465 TYR A 40 REMARK 465 CYS A 41 REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 TRP A 45 REMARK 465 ARG A 46 REMARK 465 VAL A 47 REMARK 465 ILE A 48 REMARK 465 GLY A 49 REMARK 465 TYR A 50 REMARK 465 HIS A 51 REMARK 465 VAL A 52 REMARK 465 VAL A 53 REMARK 465 VAL A 54 REMARK 465 TRP A 55 REMARK 465 MET A 56 REMARK 465 MET A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 GLY A 72 REMARK 465 VAL A 73 REMARK 465 ARG A 74 REMARK 465 LEU A 75 REMARK 465 ARG A 76 REMARK 465 LEU A 77 REMARK 465 ARG A 78 REMARK 465 PRO A 79 REMARK 465 CYS A 80 REMARK 465 ASN A 81 REMARK 465 LEU A 82 REMARK 465 ALA A 83 REMARK 465 HIS A 84 REMARK 465 ALA A 85 REMARK 465 GLU A 86 REMARK 465 THR A 87 REMARK 465 LEU A 88 REMARK 465 VAL A 89 REMARK 465 ILE A 90 REMARK 465 GLU A 91 REMARK 465 ILE A 92 REMARK 465 ARG A 93 REMARK 465 ASP A 94 REMARK 465 LYS A 95 REMARK 465 GLU A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 SER A 99 REMARK 465 TRP A 100 REMARK 465 GLN A 101 REMARK 465 LEU A 102 REMARK 465 PHE A 103 REMARK 465 THR A 104 REMARK 465 VAL A 105 REMARK 465 GLN A 106 REMARK 465 VAL A 107 REMARK 465 GLN A 108 REMARK 465 THR A 109 REMARK 465 GLU A 110 REMARK 465 ALA A 111 REMARK 465 ILE A 112 REMARK 465 GLU A 126 REMARK 465 ASP A 127 REMARK 465 GLY A 128 REMARK 465 ARG A 129 REMARK 465 SER A 130 REMARK 465 GLN A 131 REMARK 465 ALA A 132 REMARK 465 ALA A 133 REMARK 465 VAL A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 VAL A 137 REMARK 465 PRO A 138 REMARK 465 GLU A 139 REMARK 465 LEU A 361 REMARK 465 GLY A 362 REMARK 465 PRO A 363 REMARK 465 TYR A 364 REMARK 465 ALA A 614 REMARK 465 MET A 615 REMARK 465 GLU A 616 REMARK 465 GLU A 617 REMARK 465 PRO A 618 REMARK 465 PRO A 619 REMARK 465 THR A 697 REMARK 465 VAL A 698 REMARK 465 PRO A 699 REMARK 465 SER A 700 REMARK 465 LEU A 701 REMARK 465 GLU A 702 REMARK 465 ALA A 703 REMARK 465 ALA A 704 REMARK 465 GLN A 705 REMARK 465 GLN A 706 REMARK 465 LEU A 707 REMARK 465 PRO A 797 REMARK 465 THR A 798 REMARK 465 ALA A 799 REMARK 465 VAL A 800 REMARK 465 ASN A 801 REMARK 465 GLY A 802 REMARK 465 VAL A 803 REMARK 465 LYS A 804 REMARK 465 ASP A 805 REMARK 465 PRO A 806 REMARK 465 ASP A 807 REMARK 465 GLN A 808 REMARK 465 ALA A 809 REMARK 465 ALA A 810 REMARK 465 SER A 811 REMARK 465 TYR A 812 REMARK 465 THR A 813 REMARK 465 VAL A 814 REMARK 465 GLU A 815 REMARK 465 PRO A 816 REMARK 465 ASP A 817 REMARK 465 PRO A 818 REMARK 465 ARG A 819 REMARK 465 PRO A 1099 REMARK 465 GLY A 1100 REMARK 465 LEU A 1146 REMARK 465 ARG A 1147 REMARK 465 ARG A 1148 REMARK 465 LEU A 1149 REMARK 465 ARG A 1150 REMARK 465 PRO A 1151 REMARK 465 LYS A 1152 REMARK 465 ARG A 1153 REMARK 465 ALA A 1154 REMARK 465 LEU A 1174 REMARK 465 PRO A 1175 REMARK 465 ALA A 1176 REMARK 465 GLY A 1177 REMARK 465 PRO A 1178 REMARK 465 LEU A 1179 REMARK 465 ARG A 1180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 60 CG1 CG2 CD1 REMARK 470 PRO A 61 CG CD REMARK 470 LEU A 62 CG CD1 CD2 REMARK 470 LEU A 63 CG CD1 CD2 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 PHE A 65 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 67 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 67 CZ3 CH2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 PRO A 69 CG CD REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 TRP A 71 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 71 CZ3 CH2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 SER A 116 OG REMARK 470 LEU A 117 CG CD1 CD2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 PRO A 119 CG CD REMARK 470 SER A 120 OG REMARK 470 PRO A 121 CG CD REMARK 470 GLN A 122 CG CD OE1 NE2 REMARK 470 SER A 123 OG REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 TRP A 142 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 142 CZ3 CH2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 ASP A 144 CG OD1 OD2 REMARK 470 THR A 145 OG1 CG2 REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 HIS A 149 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 SER A 151 OG REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 VAL A 155 CG1 CG2 REMARK 470 SER A 156 OG REMARK 470 VAL A 157 CG1 CG2 REMARK 470 GLN A 159 CG CD OE1 NE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 162 CG1 CG2 REMARK 470 TRP A 175 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 175 CZ3 CH2 REMARK 470 ILE A 176 CG1 CG2 CD1 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 THR A 178 OG1 CG2 REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 PHE A 182 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 183 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 205 OG REMARK 470 LEU A 206 CG CD1 CD2 REMARK 470 MET A 210 CG SD CE REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 VAL A 233 CG1 CG2 REMARK 470 ASP A 234 CG OD1 OD2 REMARK 470 TYR A 256 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LEU A 291 CG CD1 CD2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 300 CG CD REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 GLN A 322 CG CD OE1 NE2 REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 LEU A 353 CG CD1 CD2 REMARK 470 CYS A 365 SG REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 ARG A 371 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 400 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 415 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 417 CG1 CG2 CD1 REMARK 470 ASN A 418 CG OD1 ND2 REMARK 470 PHE A 419 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 MET A 426 CG SD CE REMARK 470 LYS A 532 CG CD CE NZ REMARK 470 GLN A 613 CG CD OE1 NE2 REMARK 470 SER A 623 OG REMARK 470 ARG A 627 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 667 CG CD OE1 OE2 REMARK 470 MET A 676 CG SD CE REMARK 470 THR A 708 OG1 CG2 REMARK 470 ARG A 709 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 743 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 770 CG CD OE1 NE2 REMARK 470 GLU A 795 CG CD OE1 OE2 REMARK 470 SER A 796 OG REMARK 470 LYS A 835 CG CD CE NZ REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 GLU A 899 CG CD OE1 OE2 REMARK 470 ILE A 954 CG1 CG2 CD1 REMARK 470 ARG A 991 CG CD NE CZ NH1 NH2 REMARK 470 SER A 998 OG REMARK 470 ASP A1040 CG OD1 OD2 REMARK 470 ASN A1041 CG OD1 ND2 REMARK 470 LEU A1097 CG CD1 CD2 REMARK 470 GLN A1103 CG CD OE1 NE2 REMARK 470 ARG A1109 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1142 CG CD1 CD2 REMARK 470 PRO A1143 CG CD REMARK 470 CYS A1145 SG REMARK 470 LYS A1156 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 941 CA SER A 941 CB -0.141 REMARK 500 SER A 947 CA SER A 947 CB -0.107 REMARK 500 LEU A 961 C LEU A 961 O -0.131 REMARK 500 ALA A 965 CA ALA A 965 C -0.194 REMARK 500 SER A1052 C SER A1052 O 0.128 REMARK 500 SER A1054 CA SER A1054 CB -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 61 N - CA - CB ANGL. DEV. = 8.3 DEGREES REMARK 500 PRO A 69 N - CA - CB ANGL. DEV. = 7.5 DEGREES REMARK 500 LEU A 187 CA - CB - CG ANGL. DEV. = 18.8 DEGREES REMARK 500 SER A 904 N - CA - C ANGL. DEV. = -25.6 DEGREES REMARK 500 PRO A 905 C - N - CA ANGL. DEV. = -16.9 DEGREES REMARK 500 LEU A1095 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO A1143 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 149 -6.23 68.94 REMARK 500 LEU A 163 70.14 60.07 REMARK 500 TYR A 173 71.67 57.51 REMARK 500 GLN A 184 74.08 59.04 REMARK 500 MET A 210 45.53 -93.54 REMARK 500 GLU A 305 -10.92 71.90 REMARK 500 LEU A 326 -80.08 -84.32 REMARK 500 MET A 327 136.92 -175.17 REMARK 500 GLN A 382 -61.45 -95.29 REMARK 500 ALA A 385 -61.59 -92.17 REMARK 500 TYR A 386 -5.39 67.01 REMARK 500 LYS A 404 -5.10 74.93 REMARK 500 ASN A 418 51.17 -92.27 REMARK 500 SER A 425 -7.50 68.56 REMARK 500 ARG A 451 62.64 61.23 REMARK 500 LEU A 454 -7.05 71.91 REMARK 500 LYS A 506 78.08 -100.27 REMARK 500 ALA A 560 30.06 -95.66 REMARK 500 GLN A 635 -9.28 74.06 REMARK 500 ASP A 672 32.49 -97.31 REMARK 500 ALA A 787 -167.96 -74.62 REMARK 500 SER A 788 -168.97 -77.80 REMARK 500 GLU A 790 -22.21 74.31 REMARK 500 PHE A 791 70.24 31.22 REMARK 500 SER A 904 -82.94 -98.89 REMARK 500 PHE A 906 53.39 -93.30 REMARK 500 SER A 908 -161.64 -121.55 REMARK 500 SER A 909 27.03 -156.16 REMARK 500 ASP A 960 -61.23 -97.61 REMARK 500 SER A 979 37.46 -97.58 REMARK 500 VAL A1036 -62.02 -125.81 REMARK 500 ARG A1072 -83.04 -84.02 REMARK 500 ARG A1073 153.68 177.51 REMARK 500 LEU A1106 -7.08 72.36 REMARK 500 THR A1114 -168.35 -79.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 254 HIS A 255 -145.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 965 -11.79 REMARK 500 ILE A 966 -14.18 REMARK 500 ASP A 967 -14.65 REMARK 500 LEU A 968 -12.80 REMARK 500 VAL A 969 -12.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-31623 RELATED DB: EMDB REMARK 900 LYSOSOMAL ATPASE DBREF 7FJM A 1 1180 UNP Q9NQ11 AT132_HUMAN 1 1180 SEQADV 7FJM A UNP Q9NQ11 TRP 583 DELETION SEQADV 7FJM A UNP Q9NQ11 VAL 584 DELETION SEQADV 7FJM A UNP Q9NQ11 LEU 585 DELETION SEQADV 7FJM A UNP Q9NQ11 GLU 586 DELETION SEQADV 7FJM A UNP Q9NQ11 GLU 587 DELETION SEQADV 7FJM A UNP Q9NQ11 GLU 588 DELETION SEQADV 7FJM A UNP Q9NQ11 PRO 589 DELETION SEQADV 7FJM A UNP Q9NQ11 ALA 590 DELETION SEQADV 7FJM A UNP Q9NQ11 ALA 591 DELETION SEQADV 7FJM A UNP Q9NQ11 ASP 592 DELETION SEQADV 7FJM A UNP Q9NQ11 SER 593 DELETION SEQADV 7FJM A UNP Q9NQ11 ALA 594 DELETION SEQADV 7FJM A UNP Q9NQ11 PHE 595 DELETION SEQADV 7FJM A UNP Q9NQ11 GLY 596 DELETION SEQADV 7FJM A UNP Q9NQ11 THR 597 DELETION SEQADV 7FJM A UNP Q9NQ11 GLN 598 DELETION SEQADV 7FJM A UNP Q9NQ11 VAL 599 DELETION SEQADV 7FJM A UNP Q9NQ11 LEU 600 DELETION SEQADV 7FJM A UNP Q9NQ11 ALA 601 DELETION SEQADV 7FJM A UNP Q9NQ11 VAL 602 DELETION SEQADV 7FJM A UNP Q9NQ11 MET 603 DELETION SEQADV 7FJM A UNP Q9NQ11 ARG 604 DELETION SEQADV 7FJM A UNP Q9NQ11 PRO 605 DELETION SEQADV 7FJM A UNP Q9NQ11 PRO 606 DELETION SEQADV 7FJM A UNP Q9NQ11 LEU 607 DELETION SEQADV 7FJM A UNP Q9NQ11 TRP 608 DELETION SEQADV 7FJM A UNP Q9NQ11 GLU 609 DELETION SEQADV 7FJM A UNP Q9NQ11 HIS 780 DELETION SEQADV 7FJM A UNP Q9NQ11 PRO 781 DELETION SEQADV 7FJM A UNP Q9NQ11 GLU 782 DELETION SEQADV 7FJM A UNP Q9NQ11 ARG 783 DELETION SEQRES 1 A 1149 MET SER ALA ASP SER SER PRO LEU VAL GLY SER THR PRO SEQRES 2 A 1149 THR GLY TYR GLY THR LEU THR ILE GLY THR SER ILE ASP SEQRES 3 A 1149 PRO LEU SER SER SER VAL SER SER VAL ARG LEU SER GLY SEQRES 4 A 1149 TYR CYS GLY SER PRO TRP ARG VAL ILE GLY TYR HIS VAL SEQRES 5 A 1149 VAL VAL TRP MET MET ALA GLY ILE PRO LEU LEU LEU PHE SEQRES 6 A 1149 ARG TRP LYS PRO LEU TRP GLY VAL ARG LEU ARG LEU ARG SEQRES 7 A 1149 PRO CYS ASN LEU ALA HIS ALA GLU THR LEU VAL ILE GLU SEQRES 8 A 1149 ILE ARG ASP LYS GLU ASP SER SER TRP GLN LEU PHE THR SEQRES 9 A 1149 VAL GLN VAL GLN THR GLU ALA ILE GLY GLU GLY SER LEU SEQRES 10 A 1149 GLU PRO SER PRO GLN SER GLN ALA GLU ASP GLY ARG SER SEQRES 11 A 1149 GLN ALA ALA VAL GLY ALA VAL PRO GLU GLY ALA TRP LYS SEQRES 12 A 1149 ASP THR ALA GLN LEU HIS LYS SER GLU GLU ALA VAL SER SEQRES 13 A 1149 VAL GLY GLN LYS ARG VAL LEU ARG TYR TYR LEU PHE GLN SEQRES 14 A 1149 GLY GLN ARG TYR ILE TRP ILE GLU THR GLN GLN ALA PHE SEQRES 15 A 1149 TYR GLN VAL SER LEU LEU ASP HIS GLY ARG SER CYS ASP SEQRES 16 A 1149 ASP VAL HIS ARG SER ARG HIS GLY LEU SER LEU GLN ASP SEQRES 17 A 1149 GLN MET VAL ARG LYS ALA ILE TYR GLY PRO ASN VAL ILE SEQRES 18 A 1149 SER ILE PRO VAL LYS SER TYR PRO GLN LEU LEU VAL ASP SEQRES 19 A 1149 GLU ALA LEU ASN PRO TYR TYR GLY PHE GLN ALA PHE SER SEQRES 20 A 1149 ILE ALA LEU TRP LEU ALA ASP HIS TYR TYR TRP TYR ALA SEQRES 21 A 1149 LEU CYS ILE PHE LEU ILE SER SER ILE SER ILE CYS LEU SEQRES 22 A 1149 SER LEU TYR LYS THR ARG LYS GLN SER GLN THR LEU ARG SEQRES 23 A 1149 ASP MET VAL LYS LEU SER MET ARG VAL CYS VAL CYS ARG SEQRES 24 A 1149 PRO GLY GLY GLU GLU GLU TRP VAL ASP SER SER GLU LEU SEQRES 25 A 1149 VAL PRO GLY ASP CYS LEU VAL LEU PRO GLN GLU GLY GLY SEQRES 26 A 1149 LEU MET PRO CYS ASP ALA ALA LEU VAL ALA GLY GLU CYS SEQRES 27 A 1149 MET VAL ASN GLU SER SER LEU THR GLY GLU SER ILE PRO SEQRES 28 A 1149 VAL LEU LYS THR ALA LEU PRO GLU GLY LEU GLY PRO TYR SEQRES 29 A 1149 CYS ALA GLU THR HIS ARG ARG HIS THR LEU PHE CYS GLY SEQRES 30 A 1149 THR LEU ILE LEU GLN ALA ARG ALA TYR VAL GLY PRO HIS SEQRES 31 A 1149 VAL LEU ALA VAL VAL THR ARG THR GLY PHE CYS THR ALA SEQRES 32 A 1149 LYS GLY GLY LEU VAL SER SER ILE LEU HIS PRO ARG PRO SEQRES 33 A 1149 ILE ASN PHE LYS PHE TYR LYS HIS SER MET LYS PHE VAL SEQRES 34 A 1149 ALA ALA LEU SER VAL LEU ALA LEU LEU GLY THR ILE TYR SEQRES 35 A 1149 SER ILE PHE ILE LEU TYR ARG ASN ARG VAL PRO LEU ASN SEQRES 36 A 1149 GLU ILE VAL ILE ARG ALA LEU ASP LEU VAL THR VAL VAL SEQRES 37 A 1149 VAL PRO PRO ALA LEU PRO ALA ALA MET THR VAL CYS THR SEQRES 38 A 1149 LEU TYR ALA GLN SER ARG LEU ARG ARG GLN GLY ILE PHE SEQRES 39 A 1149 CYS ILE HIS PRO LEU ARG ILE ASN LEU GLY GLY LYS LEU SEQRES 40 A 1149 GLN LEU VAL CYS PHE ASP LYS THR GLY THR LEU THR GLU SEQRES 41 A 1149 ASP GLY LEU ASP VAL MET GLY VAL VAL PRO LEU LYS GLY SEQRES 42 A 1149 GLN ALA PHE LEU PRO LEU VAL PRO GLU PRO ARG ARG LEU SEQRES 43 A 1149 PRO VAL GLY PRO LEU LEU ARG ALA LEU ALA THR CYS HIS SEQRES 44 A 1149 ALA LEU SER ARG LEU GLN ASP THR PRO VAL GLY ASP PRO SEQRES 45 A 1149 MET ASP LEU LYS MET VAL GLU SER THR GLY PRO GLN LEU SEQRES 46 A 1149 GLN ALA MET GLU GLU PRO PRO VAL PRO VAL SER VAL LEU SEQRES 47 A 1149 HIS ARG PHE PRO PHE SER SER ALA LEU GLN ARG MET SER SEQRES 48 A 1149 VAL VAL VAL ALA TRP PRO GLY ALA THR GLN PRO GLU ALA SEQRES 49 A 1149 TYR VAL LYS GLY SER PRO GLU LEU VAL ALA GLY LEU CYS SEQRES 50 A 1149 ASN PRO GLU THR VAL PRO THR ASP PHE ALA GLN MET LEU SEQRES 51 A 1149 GLN SER TYR THR ALA ALA GLY TYR ARG VAL VAL ALA LEU SEQRES 52 A 1149 ALA SER LYS PRO LEU PRO THR VAL PRO SER LEU GLU ALA SEQRES 53 A 1149 ALA GLN GLN LEU THR ARG ASP THR VAL GLU GLY ASP LEU SEQRES 54 A 1149 SER LEU LEU GLY LEU LEU VAL MET ARG ASN LEU LEU LYS SEQRES 55 A 1149 PRO GLN THR THR PRO VAL ILE GLN ALA LEU ARG ARG THR SEQRES 56 A 1149 ARG ILE ARG ALA VAL MET VAL THR GLY ASP ASN LEU GLN SEQRES 57 A 1149 THR ALA VAL THR VAL ALA ARG GLY CYS GLY MET VAL ALA SEQRES 58 A 1149 PRO GLN GLU HIS LEU ILE ILE VAL HIS ALA THR GLY GLN SEQRES 59 A 1149 PRO ALA SER LEU GLU PHE LEU PRO MET GLU SER PRO THR SEQRES 60 A 1149 ALA VAL ASN GLY VAL LYS ASP PRO ASP GLN ALA ALA SER SEQRES 61 A 1149 TYR THR VAL GLU PRO ASP PRO ARG SER ARG HIS LEU ALA SEQRES 62 A 1149 LEU SER GLY PRO THR PHE GLY ILE ILE VAL LYS HIS PHE SEQRES 63 A 1149 PRO LYS LEU LEU PRO LYS VAL LEU VAL GLN GLY THR VAL SEQRES 64 A 1149 PHE ALA ARG MET ALA PRO GLU GLN LYS THR GLU LEU VAL SEQRES 65 A 1149 CYS GLU LEU GLN LYS LEU GLN TYR CYS VAL GLY MET CYS SEQRES 66 A 1149 GLY ASP GLY ALA ASN ASP CYS GLY ALA LEU LYS ALA ALA SEQRES 67 A 1149 ASP VAL GLY ILE SER LEU SER GLN ALA GLU ALA SER VAL SEQRES 68 A 1149 VAL SER PRO PHE THR SER SER MET ALA SER ILE GLU CYS SEQRES 69 A 1149 VAL PRO MET VAL ILE ARG GLU GLY ARG CYS SER LEU ASP SEQRES 70 A 1149 THR SER PHE SER VAL PHE LYS TYR MET ALA LEU TYR SER SEQRES 71 A 1149 LEU THR GLN PHE ILE SER VAL LEU ILE LEU TYR THR ILE SEQRES 72 A 1149 ASN THR ASN LEU GLY ASP LEU GLN PHE LEU ALA ILE ASP SEQRES 73 A 1149 LEU VAL ILE THR THR THR VAL ALA VAL LEU MET SER ARG SEQRES 74 A 1149 THR GLY PRO ALA LEU VAL LEU GLY ARG VAL ARG PRO PRO SEQRES 75 A 1149 GLY ALA LEU LEU SER VAL PRO VAL LEU SER SER LEU LEU SEQRES 76 A 1149 LEU GLN MET VAL LEU VAL THR GLY VAL GLN LEU GLY GLY SEQRES 77 A 1149 TYR PHE LEU THR LEU ALA GLN PRO TRP PHE VAL PRO LEU SEQRES 78 A 1149 ASN ARG THR VAL ALA ALA PRO ASP ASN LEU PRO ASN TYR SEQRES 79 A 1149 GLU ASN THR VAL VAL PHE SER LEU SER SER PHE GLN TYR SEQRES 80 A 1149 LEU ILE LEU ALA ALA ALA VAL SER LYS GLY ALA PRO PHE SEQRES 81 A 1149 ARG ARG PRO LEU TYR THR ASN VAL PRO PHE LEU VAL ALA SEQRES 82 A 1149 LEU ALA LEU LEU SER SER VAL LEU VAL GLY LEU VAL LEU SEQRES 83 A 1149 VAL PRO GLY LEU LEU GLN GLY PRO LEU ALA LEU ARG ASN SEQRES 84 A 1149 ILE THR ASP THR GLY PHE LYS LEU LEU LEU LEU GLY LEU SEQRES 85 A 1149 VAL THR LEU ASN PHE VAL GLY ALA PHE MET LEU GLU SER SEQRES 86 A 1149 VAL LEU ASP GLN CYS LEU PRO ALA CYS LEU ARG ARG LEU SEQRES 87 A 1149 ARG PRO LYS ARG ALA SER LYS LYS ARG PHE LYS GLN LEU SEQRES 88 A 1149 GLU ARG GLU LEU ALA GLU GLN PRO TRP PRO PRO LEU PRO SEQRES 89 A 1149 ALA GLY PRO LEU ARG HELIX 1 AA1 TRP A 67 TRP A 71 5 5 HELIX 2 AA2 GLU A 118 GLN A 124 1 7 HELIX 3 AA3 SER A 193 SER A 200 1 8 HELIX 4 AA4 SER A 205 TYR A 216 1 12 HELIX 5 AA5 SER A 227 LEU A 237 1 11 HELIX 6 AA6 TYR A 241 LEU A 252 1 12 HELIX 7 AA7 TRP A 258 ILE A 266 1 9 HELIX 8 AA8 ILE A 269 VAL A 289 1 21 HELIX 9 AA9 ASP A 308 LEU A 312 5 5 HELIX 10 AB1 HIS A 369 ARG A 371 5 3 HELIX 11 AB2 GLY A 405 SER A 410 1 6 HELIX 12 AB3 MET A 426 LEU A 447 1 22 HELIX 13 AB4 TYR A 448 ARG A 451 5 4 HELIX 14 AB5 GLU A 456 THR A 466 1 11 HELIX 15 AB6 ALA A 472 GLY A 492 1 21 HELIX 16 AB7 HIS A 497 ILE A 501 5 5 HELIX 17 AB8 SER A 656 GLY A 662 1 7 HELIX 18 AB9 ASP A 672 ALA A 682 1 11 HELIX 19 AC1 THR A 732 ARG A 741 1 10 HELIX 20 AC2 ASN A 753 ARG A 762 1 10 HELIX 21 AC3 SER A 826 PHE A 837 1 12 HELIX 22 AC4 PRO A 838 LEU A 840 5 3 HELIX 23 AC5 LEU A 841 VAL A 846 1 6 HELIX 24 AC6 GLN A 858 GLN A 867 1 10 HELIX 25 AC7 GLY A 884 ALA A 889 1 6 HELIX 26 AC8 SER A 912 GLU A 914 5 3 HELIX 27 AC9 CYS A 915 SER A 926 1 12 HELIX 28 AD1 ASP A 928 ILE A 950 1 23 HELIX 29 AD2 GLY A 959 LEU A 977 1 19 HELIX 30 AD3 MET A 978 THR A 981 5 4 HELIX 31 AD4 SER A 998 LEU A 1024 1 27 HELIX 32 AD5 ASN A 1044 SER A 1066 1 23 HELIX 33 AD6 PRO A 1074 THR A 1077 5 4 HELIX 34 AD7 ASN A 1078 VAL A 1098 1 21 HELIX 35 AD8 GLY A 1104 LEU A 1108 5 5 HELIX 36 AD9 PHE A 1116 LEU A 1121 1 6 HELIX 37 AE1 LEU A 1121 ASP A 1139 1 19 HELIX 38 AE2 LYS A 1157 GLN A 1169 1 13 SHEET 1 AA1 4 CYS A 317 LEU A 318 0 SHEET 2 AA1 4 LEU A 392 VAL A 395 -1 O ALA A 393 N LEU A 318 SHEET 3 AA1 4 ALA A 331 ALA A 335 -1 N ALA A 332 O VAL A 394 SHEET 4 AA1 4 THR A 373 LEU A 374 -1 O LEU A 374 N ALA A 331 SHEET 1 AA2 3 PRO A 351 LYS A 354 0 SHEET 2 AA2 3 CYS A 338 ASN A 341 -1 N CYS A 338 O LYS A 354 SHEET 3 AA2 3 LEU A 379 ILE A 380 -1 O LEU A 379 N ASN A 341 SHEET 1 AA3 5 VAL A 850 PHE A 851 0 SHEET 2 AA3 5 ARG A 745 VAL A 749 1 N MET A 748 O PHE A 851 SHEET 3 AA3 5 LEU A 509 PHE A 512 1 N PHE A 512 O VAL A 749 SHEET 4 AA3 5 VAL A 873 GLY A 877 1 O GLY A 874 N CYS A 511 SHEET 5 AA3 5 VAL A 891 SER A 894 1 O ILE A 893 N MET A 875 SHEET 1 AA4 6 ASP A 524 PRO A 530 0 SHEET 2 AA4 6 SER A 717 ARG A 725 -1 O ARG A 725 N ASP A 524 SHEET 3 AA4 6 ARG A 686 PRO A 694 -1 N ARG A 686 O MET A 724 SHEET 4 AA4 6 GLU A 650 GLY A 655 -1 N GLY A 655 O ALA A 689 SHEET 5 AA4 6 MET A 637 ALA A 642 -1 N VAL A 639 O TYR A 652 SHEET 6 AA4 6 VAL A 622 PHE A 628 -1 N PHE A 628 O SER A 638 SHEET 1 AA5 2 ARG A 563 LEU A 564 0 SHEET 2 AA5 2 THR A 567 PRO A 568 -1 O THR A 567 N LEU A 564 SHEET 1 AA6 3 LEU A 792 PRO A 793 0 SHEET 2 AA6 3 HIS A 772 ILE A 775 -1 N ILE A 775 O LEU A 792 SHEET 3 AA6 3 ARG A 821 ALA A 824 1 O HIS A 822 N HIS A 772 SSBOND 1 CYS A 298 CYS A 317 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000