HEADER MEMBRANE PROTEIN 04-AUG-21 7FJP TITLE CRYO EM STRUCTURE OF LYSOSOMAL ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYAMINE-TRANSPORTING ATPASE 13A2; COMPND 3 CHAIN: B; COMPND 4 EC: 7.6.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATP13A2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS LYSOSOMAL ATPASE TRANSPORTER, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.S.ZHANG REVDAT 1 08-MAR-23 7FJP 0 JRNL AUTH X.CHEN,M.ZHOU,S.ZHANG,J.YIN,P.ZHANG,X.XUAN,P.WANG,Z.LIU, JRNL AUTH 2 B.ZHOU,M.YANG JRNL TITL CRYO-EM STRUCTURES AND TRANSPORT MECHANISM OF HUMAN P5B TYPE JRNL TITL 2 ATPASE ATP13A2. JRNL REF CELL DISCOV V. 7 106 2021 JRNL REFN ESSN 2056-5968 JRNL PMID 34728622 JRNL DOI 10.1038/S41421-021-00334-6 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 317000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7FJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-21. REMARK 100 THE DEPOSITION ID IS D_1300023745. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LYSOSOMAL ATPASE E1P_ADP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 ASP B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 PRO B 7 REMARK 465 LEU B 8 REMARK 465 VAL B 9 REMARK 465 GLY B 10 REMARK 465 SER B 11 REMARK 465 THR B 12 REMARK 465 PRO B 13 REMARK 465 THR B 14 REMARK 465 GLY B 15 REMARK 465 TYR B 16 REMARK 465 GLY B 17 REMARK 465 THR B 18 REMARK 465 LEU B 19 REMARK 465 THR B 20 REMARK 465 ILE B 21 REMARK 465 GLY B 22 REMARK 465 THR B 23 REMARK 465 SER B 24 REMARK 465 ILE B 25 REMARK 465 ASP B 26 REMARK 465 PRO B 27 REMARK 465 LEU B 28 REMARK 465 SER B 29 REMARK 465 SER B 30 REMARK 465 SER B 31 REMARK 465 VAL B 32 REMARK 465 SER B 33 REMARK 465 SER B 34 REMARK 465 VAL B 35 REMARK 465 ARG B 36 REMARK 465 LEU B 37 REMARK 465 SER B 38 REMARK 465 GLY B 39 REMARK 465 TYR B 40 REMARK 465 CYS B 41 REMARK 465 GLY B 42 REMARK 465 SER B 43 REMARK 465 PRO B 44 REMARK 465 TRP B 45 REMARK 465 ARG B 46 REMARK 465 VAL B 47 REMARK 465 ILE B 48 REMARK 465 GLY B 49 REMARK 465 TYR B 50 REMARK 465 HIS B 51 REMARK 465 VAL B 52 REMARK 465 VAL B 53 REMARK 465 VAL B 54 REMARK 465 TRP B 55 REMARK 465 MET B 56 REMARK 465 MET B 57 REMARK 465 ALA B 58 REMARK 465 GLY B 59 REMARK 465 GLY B 72 REMARK 465 VAL B 73 REMARK 465 ARG B 74 REMARK 465 LEU B 75 REMARK 465 ARG B 76 REMARK 465 LEU B 77 REMARK 465 ARG B 78 REMARK 465 PRO B 79 REMARK 465 CYS B 80 REMARK 465 ASN B 81 REMARK 465 LEU B 82 REMARK 465 ALA B 83 REMARK 465 HIS B 84 REMARK 465 ALA B 85 REMARK 465 GLU B 86 REMARK 465 THR B 87 REMARK 465 LEU B 88 REMARK 465 VAL B 89 REMARK 465 ILE B 90 REMARK 465 GLU B 91 REMARK 465 ILE B 92 REMARK 465 ARG B 93 REMARK 465 ASP B 94 REMARK 465 LYS B 95 REMARK 465 GLU B 96 REMARK 465 ASP B 97 REMARK 465 SER B 98 REMARK 465 SER B 99 REMARK 465 TRP B 100 REMARK 465 GLN B 101 REMARK 465 LEU B 102 REMARK 465 PHE B 103 REMARK 465 THR B 104 REMARK 465 VAL B 105 REMARK 465 GLN B 106 REMARK 465 VAL B 107 REMARK 465 GLN B 108 REMARK 465 THR B 109 REMARK 465 GLU B 110 REMARK 465 ALA B 111 REMARK 465 ILE B 112 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 TRP B 142 REMARK 465 LEU B 361 REMARK 465 GLY B 362 REMARK 465 PRO B 363 REMARK 465 TYR B 364 REMARK 465 ALA B 614 REMARK 465 MET B 615 REMARK 465 GLU B 616 REMARK 465 GLU B 617 REMARK 465 PRO B 618 REMARK 465 PRO B 619 REMARK 465 THR B 697 REMARK 465 VAL B 698 REMARK 465 PRO B 699 REMARK 465 SER B 700 REMARK 465 LEU B 701 REMARK 465 GLU B 702 REMARK 465 ALA B 703 REMARK 465 ALA B 704 REMARK 465 GLN B 705 REMARK 465 GLN B 706 REMARK 465 LEU B 707 REMARK 465 PRO B 797 REMARK 465 THR B 798 REMARK 465 ALA B 799 REMARK 465 VAL B 800 REMARK 465 ASN B 801 REMARK 465 GLY B 802 REMARK 465 VAL B 803 REMARK 465 LYS B 804 REMARK 465 ASP B 805 REMARK 465 PRO B 806 REMARK 465 ASP B 807 REMARK 465 GLN B 808 REMARK 465 ALA B 809 REMARK 465 ALA B 810 REMARK 465 SER B 811 REMARK 465 TYR B 812 REMARK 465 THR B 813 REMARK 465 VAL B 814 REMARK 465 GLU B 815 REMARK 465 PRO B 816 REMARK 465 ASP B 817 REMARK 465 PRO B 818 REMARK 465 ARG B 819 REMARK 465 PRO B 1099 REMARK 465 GLY B 1100 REMARK 465 LEU B 1146 REMARK 465 ARG B 1147 REMARK 465 ARG B 1148 REMARK 465 LEU B 1149 REMARK 465 ARG B 1150 REMARK 465 PRO B 1151 REMARK 465 LYS B 1152 REMARK 465 ARG B 1153 REMARK 465 ALA B 1154 REMARK 465 LEU B 1174 REMARK 465 PRO B 1175 REMARK 465 ALA B 1176 REMARK 465 GLY B 1177 REMARK 465 PRO B 1178 REMARK 465 LEU B 1179 REMARK 465 ARG B 1180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 60 CG1 CG2 CD1 REMARK 470 PRO B 61 CG CD REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 PHE B 65 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 67 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 67 CZ3 CH2 REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 PRO B 69 CG CD REMARK 470 LEU B 70 CG CD1 CD2 REMARK 470 TRP B 71 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 71 CZ3 CH2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 SER B 116 OG REMARK 470 LEU B 117 CG CD1 CD2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 PRO B 119 CG CD REMARK 470 SER B 120 OG REMARK 470 PRO B 121 CG CD REMARK 470 GLN B 122 CG CD OE1 NE2 REMARK 470 SER B 123 OG REMARK 470 GLN B 124 CG CD OE1 NE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ASP B 127 CG OD1 OD2 REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 SER B 130 OG REMARK 470 GLN B 131 CG CD OE1 NE2 REMARK 470 VAL B 134 CG1 CG2 REMARK 470 VAL B 137 CG1 CG2 REMARK 470 PRO B 138 CG CD REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 ASP B 144 CG OD1 OD2 REMARK 470 THR B 145 OG1 CG2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 SER B 205 OG REMARK 470 LEU B 206 CG CD1 CD2 REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 MET B 210 CG SD CE REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 470 VAL B 233 CG1 CG2 REMARK 470 ASP B 234 CG OD1 OD2 REMARK 470 LYS B 290 CG CD CE NZ REMARK 470 LEU B 291 CG CD1 CD2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 300 CG CD REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 GLN B 322 CG CD OE1 NE2 REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 470 CYS B 365 SG REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 ARG B 371 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 384 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 400 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 415 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 418 CG OD1 ND2 REMARK 470 PHE B 419 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 420 CG CD CE NZ REMARK 470 PHE B 421 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 423 CG CD CE NZ REMARK 470 MET B 426 CG SD CE REMARK 470 LYS B 532 CG CD CE NZ REMARK 470 GLN B 613 CG CD OE1 NE2 REMARK 470 SER B 623 OG REMARK 470 ARG B 627 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 667 CG CD OE1 OE2 REMARK 470 MET B 676 CG SD CE REMARK 470 THR B 708 OG1 CG2 REMARK 470 ARG B 709 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 743 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 770 CG CD OE1 NE2 REMARK 470 GLU B 795 CG CD OE1 OE2 REMARK 470 SER B 796 OG REMARK 470 LYS B 835 CG CD CE NZ REMARK 470 LYS B 839 CG CD CE NZ REMARK 470 GLU B 899 CG CD OE1 OE2 REMARK 470 ILE B 954 CG1 CG2 CD1 REMARK 470 ARG B 991 CG CD NE CZ NH1 NH2 REMARK 470 SER B 998 OG REMARK 470 ASP B1040 CG OD1 OD2 REMARK 470 ASN B1041 CG OD1 ND2 REMARK 470 LEU B1097 CG CD1 CD2 REMARK 470 GLN B1103 CG CD OE1 NE2 REMARK 470 ARG B1109 CG CD NE CZ NH1 NH2 REMARK 470 LEU B1142 CG CD1 CD2 REMARK 470 PRO B1143 CG CD REMARK 470 CYS B1145 SG REMARK 470 LYS B1156 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 513 O3 PO4 B 1201 1.27 REMARK 500 OG SER B 894 NE2 GLN B 897 1.59 REMARK 500 OG SER B 156 O LEU B 163 1.76 REMARK 500 NH1 ARG B 161 OE2 GLU B 177 1.91 REMARK 500 NZ LYS B 887 O VAL B 903 1.93 REMARK 500 OD1 ASP B 513 OG1 THR B 517 2.00 REMARK 500 OD1 ASP B 254 CD1 ILE B 459 2.17 REMARK 500 OD2 ASP B 254 NH1 ARG B 460 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 61 N - CA - CB ANGL. DEV. = 8.5 DEGREES REMARK 500 PRO B 138 N - CA - CB ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 64 33.24 -97.75 REMARK 500 ARG B 129 69.67 60.09 REMARK 500 THR B 145 -173.10 77.39 REMARK 500 SER B 156 130.87 -33.99 REMARK 500 LEU B 188 -82.04 -22.00 REMARK 500 GLU B 305 -7.34 68.52 REMARK 500 GLU B 342 34.91 -96.05 REMARK 500 HIS B 369 53.03 -92.40 REMARK 500 ALA B 385 -61.40 -100.71 REMARK 500 TYR B 386 -5.62 66.00 REMARK 500 THR B 398 -169.83 -123.82 REMARK 500 LYS B 404 -8.84 76.70 REMARK 500 LYS B 423 -61.76 70.96 REMARK 500 ARG B 451 61.19 61.84 REMARK 500 LEU B 454 -7.92 71.87 REMARK 500 ASP B 566 -6.28 71.29 REMARK 500 ASP B 710 38.15 -96.83 REMARK 500 HIS B 777 70.34 57.62 REMARK 500 ALA B 787 -169.18 -75.99 REMARK 500 SER B 788 -166.50 -79.14 REMARK 500 GLU B 790 -20.31 74.61 REMARK 500 PHE B 791 99.96 39.70 REMARK 500 GLN B 847 12.65 -140.67 REMARK 500 MET B 875 114.61 -160.68 REMARK 500 SER B 896 60.26 60.94 REMARK 500 GLU B 899 -135.71 56.76 REMARK 500 ARG B 989 47.46 -91.58 REMARK 500 ALA B1025 31.40 -96.16 REMARK 500 VAL B1036 -68.08 -121.54 REMARK 500 ARG B1072 -84.03 -83.64 REMARK 500 ARG B1073 161.10 178.96 REMARK 500 LEU B1106 -7.42 71.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 515 O REMARK 620 2 PO4 B1201 O4 58.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B1202 O2B REMARK 620 2 ADP B1202 O1A 68.1 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-31626 RELATED DB: EMDB REMARK 900 LYSOSOMAL ATPASE DBREF 7FJP B 1 1180 UNP Q9NQ11 AT132_HUMAN 1 1180 SEQADV 7FJP B UNP Q9NQ11 TRP 583 DELETION SEQADV 7FJP B UNP Q9NQ11 VAL 584 DELETION SEQADV 7FJP B UNP Q9NQ11 LEU 585 DELETION SEQADV 7FJP B UNP Q9NQ11 GLU 586 DELETION SEQADV 7FJP B UNP Q9NQ11 GLU 587 DELETION SEQADV 7FJP B UNP Q9NQ11 GLU 588 DELETION SEQADV 7FJP B UNP Q9NQ11 PRO 589 DELETION SEQADV 7FJP B UNP Q9NQ11 ALA 590 DELETION SEQADV 7FJP B UNP Q9NQ11 ALA 591 DELETION SEQADV 7FJP B UNP Q9NQ11 ASP 592 DELETION SEQADV 7FJP B UNP Q9NQ11 SER 593 DELETION SEQADV 7FJP B UNP Q9NQ11 ALA 594 DELETION SEQADV 7FJP B UNP Q9NQ11 PHE 595 DELETION SEQADV 7FJP B UNP Q9NQ11 GLY 596 DELETION SEQADV 7FJP B UNP Q9NQ11 THR 597 DELETION SEQADV 7FJP B UNP Q9NQ11 GLN 598 DELETION SEQADV 7FJP B UNP Q9NQ11 VAL 599 DELETION SEQADV 7FJP B UNP Q9NQ11 LEU 600 DELETION SEQADV 7FJP B UNP Q9NQ11 ALA 601 DELETION SEQADV 7FJP B UNP Q9NQ11 VAL 602 DELETION SEQADV 7FJP B UNP Q9NQ11 MET 603 DELETION SEQADV 7FJP B UNP Q9NQ11 ARG 604 DELETION SEQADV 7FJP B UNP Q9NQ11 PRO 605 DELETION SEQADV 7FJP B UNP Q9NQ11 PRO 606 DELETION SEQADV 7FJP B UNP Q9NQ11 LEU 607 DELETION SEQADV 7FJP B UNP Q9NQ11 TRP 608 DELETION SEQADV 7FJP B UNP Q9NQ11 GLU 609 DELETION SEQADV 7FJP B UNP Q9NQ11 HIS 780 DELETION SEQADV 7FJP B UNP Q9NQ11 PRO 781 DELETION SEQADV 7FJP B UNP Q9NQ11 GLU 782 DELETION SEQADV 7FJP B UNP Q9NQ11 ARG 783 DELETION SEQRES 1 B 1148 MET SER ALA ASP SER SER PRO LEU VAL GLY SER THR PRO SEQRES 2 B 1148 THR GLY TYR GLY THR LEU THR ILE GLY THR SER ILE ASP SEQRES 3 B 1148 PRO LEU SER SER SER VAL SER SER VAL ARG LEU SER GLY SEQRES 4 B 1148 TYR CYS GLY SER PRO TRP ARG VAL ILE GLY TYR HIS VAL SEQRES 5 B 1148 VAL VAL TRP MET MET ALA GLY ILE PRO LEU LEU LEU PHE SEQRES 6 B 1148 ARG TRP LYS PRO LEU TRP GLY VAL ARG LEU ARG LEU ARG SEQRES 7 B 1148 PRO CYS ASN LEU ALA HIS ALA GLU THR LEU VAL ILE GLU SEQRES 8 B 1148 ILE ARG ASP LYS GLU ASP SER SER TRP GLN LEU PHE THR SEQRES 9 B 1148 VAL GLN VAL GLN THR GLU ALA ILE GLY GLU GLY SER LEU SEQRES 10 B 1148 GLU PRO SER PRO GLN SER GLN ALA GLU ASP GLY ARG SER SEQRES 11 B 1148 GLN ALA ALA VAL GLY ALA VAL PRO GLU GLY ALA TRP LYS SEQRES 12 B 1148 ASP THR ALA LEU HIS LYS SER GLU GLU ALA VAL SER VAL SEQRES 13 B 1148 GLY GLN LYS ARG VAL LEU ARG TYR TYR LEU PHE GLN GLY SEQRES 14 B 1148 GLN ARG TYR ILE TRP ILE GLU THR GLN GLN ALA PHE TYR SEQRES 15 B 1148 GLN VAL SER LEU LEU ASP HIS GLY ARG SER CYS ASP ASP SEQRES 16 B 1148 VAL HIS ARG SER ARG HIS GLY LEU SER LEU GLN ASP GLN SEQRES 17 B 1148 MET VAL ARG LYS ALA ILE TYR GLY PRO ASN VAL ILE SER SEQRES 18 B 1148 ILE PRO VAL LYS SER TYR PRO GLN LEU LEU VAL ASP GLU SEQRES 19 B 1148 ALA LEU ASN PRO TYR TYR GLY PHE GLN ALA PHE SER ILE SEQRES 20 B 1148 ALA LEU TRP LEU ALA ASP HIS TYR TYR TRP TYR ALA LEU SEQRES 21 B 1148 CYS ILE PHE LEU ILE SER SER ILE SER ILE CYS LEU SER SEQRES 22 B 1148 LEU TYR LYS THR ARG LYS GLN SER GLN THR LEU ARG ASP SEQRES 23 B 1148 MET VAL LYS LEU SER MET ARG VAL CYS VAL CYS ARG PRO SEQRES 24 B 1148 GLY GLY GLU GLU GLU TRP VAL ASP SER SER GLU LEU VAL SEQRES 25 B 1148 PRO GLY ASP CYS LEU VAL LEU PRO GLN GLU GLY GLY LEU SEQRES 26 B 1148 MET PRO CYS ASP ALA ALA LEU VAL ALA GLY GLU CYS MET SEQRES 27 B 1148 VAL ASN GLU SER SER LEU THR GLY GLU SER ILE PRO VAL SEQRES 28 B 1148 LEU LYS THR ALA LEU PRO GLU GLY LEU GLY PRO TYR CYS SEQRES 29 B 1148 ALA GLU THR HIS ARG ARG HIS THR LEU PHE CYS GLY THR SEQRES 30 B 1148 LEU ILE LEU GLN ALA ARG ALA TYR VAL GLY PRO HIS VAL SEQRES 31 B 1148 LEU ALA VAL VAL THR ARG THR GLY PHE CYS THR ALA LYS SEQRES 32 B 1148 GLY GLY LEU VAL SER SER ILE LEU HIS PRO ARG PRO ILE SEQRES 33 B 1148 ASN PHE LYS PHE TYR LYS HIS SER MET LYS PHE VAL ALA SEQRES 34 B 1148 ALA LEU SER VAL LEU ALA LEU LEU GLY THR ILE TYR SER SEQRES 35 B 1148 ILE PHE ILE LEU TYR ARG ASN ARG VAL PRO LEU ASN GLU SEQRES 36 B 1148 ILE VAL ILE ARG ALA LEU ASP LEU VAL THR VAL VAL VAL SEQRES 37 B 1148 PRO PRO ALA LEU PRO ALA ALA MET THR VAL CYS THR LEU SEQRES 38 B 1148 TYR ALA GLN SER ARG LEU ARG ARG GLN GLY ILE PHE CYS SEQRES 39 B 1148 ILE HIS PRO LEU ARG ILE ASN LEU GLY GLY LYS LEU GLN SEQRES 40 B 1148 LEU VAL CYS PHE ASP LYS THR GLY THR LEU THR GLU ASP SEQRES 41 B 1148 GLY LEU ASP VAL MET GLY VAL VAL PRO LEU LYS GLY GLN SEQRES 42 B 1148 ALA PHE LEU PRO LEU VAL PRO GLU PRO ARG ARG LEU PRO SEQRES 43 B 1148 VAL GLY PRO LEU LEU ARG ALA LEU ALA THR CYS HIS ALA SEQRES 44 B 1148 LEU SER ARG LEU GLN ASP THR PRO VAL GLY ASP PRO MET SEQRES 45 B 1148 ASP LEU LYS MET VAL GLU SER THR GLY PRO GLN LEU GLN SEQRES 46 B 1148 ALA MET GLU GLU PRO PRO VAL PRO VAL SER VAL LEU HIS SEQRES 47 B 1148 ARG PHE PRO PHE SER SER ALA LEU GLN ARG MET SER VAL SEQRES 48 B 1148 VAL VAL ALA TRP PRO GLY ALA THR GLN PRO GLU ALA TYR SEQRES 49 B 1148 VAL LYS GLY SER PRO GLU LEU VAL ALA GLY LEU CYS ASN SEQRES 50 B 1148 PRO GLU THR VAL PRO THR ASP PHE ALA GLN MET LEU GLN SEQRES 51 B 1148 SER TYR THR ALA ALA GLY TYR ARG VAL VAL ALA LEU ALA SEQRES 52 B 1148 SER LYS PRO LEU PRO THR VAL PRO SER LEU GLU ALA ALA SEQRES 53 B 1148 GLN GLN LEU THR ARG ASP THR VAL GLU GLY ASP LEU SER SEQRES 54 B 1148 LEU LEU GLY LEU LEU VAL MET ARG ASN LEU LEU LYS PRO SEQRES 55 B 1148 GLN THR THR PRO VAL ILE GLN ALA LEU ARG ARG THR ARG SEQRES 56 B 1148 ILE ARG ALA VAL MET VAL THR GLY ASP ASN LEU GLN THR SEQRES 57 B 1148 ALA VAL THR VAL ALA ARG GLY CYS GLY MET VAL ALA PRO SEQRES 58 B 1148 GLN GLU HIS LEU ILE ILE VAL HIS ALA THR GLY GLN PRO SEQRES 59 B 1148 ALA SER LEU GLU PHE LEU PRO MET GLU SER PRO THR ALA SEQRES 60 B 1148 VAL ASN GLY VAL LYS ASP PRO ASP GLN ALA ALA SER TYR SEQRES 61 B 1148 THR VAL GLU PRO ASP PRO ARG SER ARG HIS LEU ALA LEU SEQRES 62 B 1148 SER GLY PRO THR PHE GLY ILE ILE VAL LYS HIS PHE PRO SEQRES 63 B 1148 LYS LEU LEU PRO LYS VAL LEU VAL GLN GLY THR VAL PHE SEQRES 64 B 1148 ALA ARG MET ALA PRO GLU GLN LYS THR GLU LEU VAL CYS SEQRES 65 B 1148 GLU LEU GLN LYS LEU GLN TYR CYS VAL GLY MET CYS GLY SEQRES 66 B 1148 ASP GLY ALA ASN ASP CYS GLY ALA LEU LYS ALA ALA ASP SEQRES 67 B 1148 VAL GLY ILE SER LEU SER GLN ALA GLU ALA SER VAL VAL SEQRES 68 B 1148 SER PRO PHE THR SER SER MET ALA SER ILE GLU CYS VAL SEQRES 69 B 1148 PRO MET VAL ILE ARG GLU GLY ARG CYS SER LEU ASP THR SEQRES 70 B 1148 SER PHE SER VAL PHE LYS TYR MET ALA LEU TYR SER LEU SEQRES 71 B 1148 THR GLN PHE ILE SER VAL LEU ILE LEU TYR THR ILE ASN SEQRES 72 B 1148 THR ASN LEU GLY ASP LEU GLN PHE LEU ALA ILE ASP LEU SEQRES 73 B 1148 VAL ILE THR THR THR VAL ALA VAL LEU MET SER ARG THR SEQRES 74 B 1148 GLY PRO ALA LEU VAL LEU GLY ARG VAL ARG PRO PRO GLY SEQRES 75 B 1148 ALA LEU LEU SER VAL PRO VAL LEU SER SER LEU LEU LEU SEQRES 76 B 1148 GLN MET VAL LEU VAL THR GLY VAL GLN LEU GLY GLY TYR SEQRES 77 B 1148 PHE LEU THR LEU ALA GLN PRO TRP PHE VAL PRO LEU ASN SEQRES 78 B 1148 ARG THR VAL ALA ALA PRO ASP ASN LEU PRO ASN TYR GLU SEQRES 79 B 1148 ASN THR VAL VAL PHE SER LEU SER SER PHE GLN TYR LEU SEQRES 80 B 1148 ILE LEU ALA ALA ALA VAL SER LYS GLY ALA PRO PHE ARG SEQRES 81 B 1148 ARG PRO LEU TYR THR ASN VAL PRO PHE LEU VAL ALA LEU SEQRES 82 B 1148 ALA LEU LEU SER SER VAL LEU VAL GLY LEU VAL LEU VAL SEQRES 83 B 1148 PRO GLY LEU LEU GLN GLY PRO LEU ALA LEU ARG ASN ILE SEQRES 84 B 1148 THR ASP THR GLY PHE LYS LEU LEU LEU LEU GLY LEU VAL SEQRES 85 B 1148 THR LEU ASN PHE VAL GLY ALA PHE MET LEU GLU SER VAL SEQRES 86 B 1148 LEU ASP GLN CYS LEU PRO ALA CYS LEU ARG ARG LEU ARG SEQRES 87 B 1148 PRO LYS ARG ALA SER LYS LYS ARG PHE LYS GLN LEU GLU SEQRES 88 B 1148 ARG GLU LEU ALA GLU GLN PRO TRP PRO PRO LEU PRO ALA SEQRES 89 B 1148 GLY PRO LEU ARG HET PO4 B1201 5 HET ADP B1202 27 HET MG B1203 1 HET MG B1204 1 HETNAM PO4 PHOSPHATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 PO4 O4 P 3- FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) HELIX 1 AA1 PRO B 119 GLN B 124 1 6 HELIX 2 AA2 ARG B 129 ALA B 133 5 5 HELIX 3 AA3 SER B 205 GLY B 217 1 13 HELIX 4 AA4 SER B 227 LEU B 237 1 11 HELIX 5 AA5 ASN B 238 ASP B 254 1 17 HELIX 6 AA6 TYR B 256 ASP B 287 1 32 HELIX 7 AA7 HIS B 369 ARG B 371 5 3 HELIX 8 AA8 LEU B 407 LEU B 412 1 6 HELIX 9 AA9 SER B 425 GLY B 439 1 15 HELIX 10 AB1 GLY B 439 ASN B 450 1 12 HELIX 11 AB2 GLU B 456 VAL B 468 1 13 HELIX 12 AB3 ALA B 472 GLN B 491 1 20 HELIX 13 AB4 HIS B 497 ILE B 501 5 5 HELIX 14 AB5 LEU B 503 LEU B 507 5 5 HELIX 15 AB6 ARG B 553 CYS B 558 1 6 HELIX 16 AB7 MET B 573 GLY B 582 1 10 HELIX 17 AB8 SER B 656 CYS B 664 1 9 HELIX 18 AB9 ASP B 672 ALA B 682 1 11 HELIX 19 AC1 GLN B 731 THR B 742 1 12 HELIX 20 AC2 ASN B 753 CYS B 764 1 12 HELIX 21 AC3 SER B 826 PHE B 837 1 12 HELIX 22 AC4 LEU B 840 VAL B 846 1 7 HELIX 23 AC5 GLU B 857 LYS B 868 1 12 HELIX 24 AC6 GLY B 879 ASN B 881 5 3 HELIX 25 AC7 ASP B 882 ALA B 889 1 8 HELIX 26 AC8 SER B 912 GLU B 914 5 3 HELIX 27 AC9 CYS B 915 LEU B 927 1 13 HELIX 28 AD1 ASP B 928 THR B 953 1 26 HELIX 29 AD2 ILE B 954 THR B 956 5 3 HELIX 30 AD3 ASP B 960 LEU B 968 1 9 HELIX 31 AD4 THR B 972 LEU B 977 1 6 HELIX 32 AD5 SER B 998 GLY B 1018 1 21 HELIX 33 AD6 TYR B 1020 ALA B 1025 1 6 HELIX 34 AD7 ASN B 1044 PHE B 1056 1 13 HELIX 35 AD8 PHE B 1056 VAL B 1065 1 10 HELIX 36 AD9 VAL B 1079 LEU B 1095 1 17 HELIX 37 AE1 GLY B 1104 LEU B 1108 5 5 HELIX 38 AE2 PHE B 1116 ALA B 1131 1 16 HELIX 39 AE3 ALA B 1131 ASP B 1139 1 9 HELIX 40 AE4 LYS B 1157 GLN B 1169 1 13 SHEET 1 AA1 2 GLY B 135 ALA B 136 0 SHEET 2 AA1 2 SER B 151 GLU B 152 -1 O SER B 151 N ALA B 136 SHEET 1 AA2 3 TYR B 165 PHE B 168 0 SHEET 2 AA2 3 GLN B 171 TRP B 175 -1 O GLN B 171 N PHE B 168 SHEET 3 AA2 3 PHE B 182 GLN B 184 -1 O TYR B 183 N ILE B 174 SHEET 1 AA3 2 ARG B 294 VAL B 295 0 SHEET 2 AA3 2 VAL B 307 ASP B 308 -1 O VAL B 307 N VAL B 295 SHEET 1 AA4 4 CYS B 317 LEU B 320 0 SHEET 2 AA4 4 VAL B 391 ARG B 397 -1 O ALA B 393 N LEU B 318 SHEET 3 AA4 4 ASP B 330 ALA B 335 -1 N ALA B 332 O VAL B 394 SHEET 4 AA4 4 THR B 373 LEU B 374 -1 O LEU B 374 N ALA B 331 SHEET 1 AA5 3 PRO B 351 LYS B 354 0 SHEET 2 AA5 3 CYS B 338 ASN B 341 -1 N VAL B 340 O VAL B 352 SHEET 3 AA5 3 LEU B 379 ILE B 380 -1 O LEU B 379 N ASN B 341 SHEET 1 AA6 9 LEU B 792 MET B 794 0 SHEET 2 AA6 9 LEU B 773 ILE B 775 -1 N ILE B 775 O LEU B 792 SHEET 3 AA6 9 HIS B 822 LEU B 825 1 O ALA B 824 N ILE B 774 SHEET 4 AA6 9 GLY B 848 PHE B 851 1 O THR B 849 N LEU B 823 SHEET 5 AA6 9 ARG B 745 VAL B 749 1 N MET B 748 O THR B 849 SHEET 6 AA6 9 LEU B 509 PHE B 512 1 N PHE B 512 O VAL B 749 SHEET 7 AA6 9 VAL B 873 GLY B 877 1 O CYS B 876 N CYS B 511 SHEET 8 AA6 9 VAL B 891 SER B 894 1 O ILE B 893 N MET B 875 SHEET 9 AA6 9 PHE B 906 THR B 907 1 O PHE B 906 N GLY B 892 SHEET 1 AA7 6 ASP B 524 PRO B 530 0 SHEET 2 AA7 6 SER B 717 ARG B 725 -1 O LEU B 721 N VAL B 529 SHEET 3 AA7 6 TYR B 685 PRO B 694 -1 N ARG B 686 O MET B 724 SHEET 4 AA7 6 GLU B 650 GLY B 655 -1 N GLY B 655 O ALA B 689 SHEET 5 AA7 6 ARG B 636 ALA B 642 -1 N VAL B 639 O TYR B 652 SHEET 6 AA7 6 VAL B 622 PHE B 628 -1 N VAL B 622 O ALA B 642 SHEET 1 AA8 2 SER B 562 LEU B 564 0 SHEET 2 AA8 2 THR B 567 VAL B 569 -1 O VAL B 569 N SER B 562 SSBOND 1 CYS B 298 CYS B 317 1555 1555 2.03 LINK O THR B 515 MG MG B1203 1555 1555 2.86 LINK O4 PO4 B1201 MG MG B1203 1555 1555 2.59 LINK O2B ADP B1202 MG MG B1204 1555 1555 1.96 LINK O1A ADP B1202 MG MG B1204 1555 1555 2.95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000