HEADER SPLICING 26-AUG-22 7FKX TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX WITH TITLE 2 FRAGMENT P04G02 FROM THE F2X-UNIVERSAL LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1836-2090; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_TAXID: 559292; SOURCE 11 STRAIN: ATCC 204508 / S288C; SOURCE 12 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, U5 SNRNP KEYWDS 2 ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS REVDAT 3 22-MAY-24 7FKX 1 REMARK REVDAT 2 30-NOV-22 7FKX 1 JRNL REVDAT 1 02-NOV-22 7FKX 0 JRNL AUTH T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS JRNL TITL LARGE-SCALE CRYSTALLOGRAPHIC FRAGMENT SCREENING EXPEDITES JRNL TITL 2 COMPOUND OPTIMIZATION AND IDENTIFIES PUTATIVE JRNL TITL 3 PROTEIN-PROTEIN INTERACTION SITES. JRNL REF J.MED.CHEM. V. 65 14630 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36260741 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01165 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 53398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8700 - 1.8500 0.98 0 2096 0.2305 0.2752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1833:1904) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4236 7.531 25.7646 REMARK 3 T TENSOR REMARK 3 T11: 0.4421 T22: 0.3904 REMARK 3 T33: 0.4455 T12: -0.0127 REMARK 3 T13: 0.0075 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.1954 L22: 0.2765 REMARK 3 L33: 0.6693 L12: -0.4537 REMARK 3 L13: -0.517 L23: 0.1894 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0009 S13: -0.1156 REMARK 3 S21: -0.0009 S22: -0.0169 S23: 0.0139 REMARK 3 S31: -0.1156 S32: 0.0139 S33: -0 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1905:1964) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5615 11.5901 20.8438 REMARK 3 T TENSOR REMARK 3 T11: 0.4499 T22: 0.4406 REMARK 3 T33: 0.335 T12: -0.0058 REMARK 3 T13: -0.0032 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.8143 L22: 1.4486 REMARK 3 L33: 0.1456 L12: -0.2206 REMARK 3 L13: 0.0266 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0119 S13: 0.0481 REMARK 3 S21: -0.0119 S22: -0.0691 S23: -0.0412 REMARK 3 S31: 0.0481 S32: -0.0412 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1965:2027) REMARK 3 ORIGIN FOR THE GROUP (A): 43.297 16.1358 35.5952 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.4072 REMARK 3 T33: 0.4109 T12: -0.0007 REMARK 3 T13: -0.0145 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: 1.2099 L22: 0.9019 REMARK 3 L33: 1.4938 L12: -0.7026 REMARK 3 L13: -0.0819 L23: 1.2232 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.3704 S13: 0.0411 REMARK 3 S21: 0.3704 S22: -0.0886 S23: -0.0009 REMARK 3 S31: 0.0411 S32: -0.0009 S33: 0 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 2028:2069) REMARK 3 ORIGIN FOR THE GROUP (A): 52.0948 24.3141 36.6809 REMARK 3 T TENSOR REMARK 3 T11: 0.363 T22: 0.4709 REMARK 3 T33: 0.6001 T12: -0.0716 REMARK 3 T13: 0.0172 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.4457 L22: 1.1463 REMARK 3 L33: 0.1802 L12: -0.3738 REMARK 3 L13: -0.3236 L23: 0.1344 REMARK 3 S TENSOR REMARK 3 S11: 0.297 S12: 0.1415 S13: -0.5511 REMARK 3 S21: 0.1415 S22: -0.0544 S23: 0.3492 REMARK 3 S31: -0.5511 S32: 0.3492 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:66) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8517 11.3678 -29.6241 REMARK 3 T TENSOR REMARK 3 T11: 0.483 T22: 0.4594 REMARK 3 T33: 0.4506 T12: 0.016 REMARK 3 T13: -0.0266 T23: -0.0735 REMARK 3 L TENSOR REMARK 3 L11: 0.6875 L22: 0.4788 REMARK 3 L33: 1.2013 L12: -0.7273 REMARK 3 L13: 0.7739 L23: -0.2574 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.1204 S13: 0.0087 REMARK 3 S21: -0.1204 S22: -0.2582 S23: -0.0527 REMARK 3 S31: 0.0087 S32: -0.0527 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 67:137) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4482 6.9462 -27.6905 REMARK 3 T TENSOR REMARK 3 T11: 0.4226 T22: 0.4239 REMARK 3 T33: 0.4394 T12: -0.028 REMARK 3 T13: -0.0471 T23: -0.0895 REMARK 3 L TENSOR REMARK 3 L11: 1.0858 L22: 0.514 REMARK 3 L33: 1.6001 L12: 0.3493 REMARK 3 L13: -0.0934 L23: -0.5317 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.3323 S13: 0.1327 REMARK 3 S21: -0.3323 S22: -0.012 S23: -0.2421 REMARK 3 S31: 0.1327 S32: -0.2421 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 138:251) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3037 4.2123 -2.6508 REMARK 3 T TENSOR REMARK 3 T11: 0.3777 T22: 0.4925 REMARK 3 T33: 0.3995 T12: -0.0377 REMARK 3 T13: 0.0135 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.3333 L22: 0.5204 REMARK 3 L33: 1.5023 L12: 0.0706 REMARK 3 L13: -0.0922 L23: 1.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0231 S13: 0.0611 REMARK 3 S21: 0.0231 S22: -0.1044 S23: -0.2127 REMARK 3 S31: 0.0611 S32: -0.2127 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 252:317) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2522 -1.1854 -11.0016 REMARK 3 T TENSOR REMARK 3 T11: 0.4301 T22: 0.4477 REMARK 3 T33: 0.4405 T12: 0.0184 REMARK 3 T13: 0.0161 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.8942 L22: 0.463 REMARK 3 L33: 1.1023 L12: -0.1433 REMARK 3 L13: -0.1811 L23: 0.7492 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: 0.0043 S13: 0.3291 REMARK 3 S21: 0.0043 S22: 0.1735 S23: 0.0935 REMARK 3 S31: 0.3291 S32: 0.0935 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1001405018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53494 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.670 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 43.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.71 REMARK 200 R MERGE FOR SHELL (I) : 0.04400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 33.53 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG4000, 3% DMSO, 0.1 M TRIS, PH REMARK 280 8.5, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.59250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.16600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.59250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.16600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 75 HZ1 LYS B 79 1.52 REMARK 500 HZ1 LYS B 74 O HOH B 403 1.57 REMARK 500 OD2 ASP B 18 HH TYR B 105 1.59 REMARK 500 O PHE A 1844 NZ LYS A 1885 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 1838 HE22 GLN B 122 4555 1.00 REMARK 500 O SER A 1838 NE2 GLN B 122 4555 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A1957 C PRO A1958 N 0.180 REMARK 500 LEU A1963 C PRO A1964 N 0.183 REMARK 500 PHE B 228 CE1 PHE B 228 CZ 0.148 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A1839 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU A1920 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 ASP A1942 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 PRO A1958 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO A1964 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 ASP B 200 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU B 284 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1838 -47.94 -19.61 REMARK 500 ASN A1839 58.58 -119.94 REMARK 500 LEU A1961 -152.22 -122.39 REMARK 500 PRO A1964 34.42 -86.12 REMARK 500 ASP A1993 -123.60 36.40 REMARK 500 ASN A2018 88.91 -151.59 REMARK 500 ASN A2018 88.91 -152.79 REMARK 500 ASN A2068 86.02 55.97 REMARK 500 ASP B 18 -133.41 50.32 REMARK 500 MET B 54 78.63 69.45 REMARK 500 MET B 54 82.25 64.66 REMARK 500 MET B 101 34.23 -97.78 REMARK 500 LYS B 132 80.01 -157.33 REMARK 500 ASN B 177 58.54 -92.03 REMARK 500 LYS B 184 62.09 -117.77 REMARK 500 LYS B 215 -40.05 80.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FKX A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 7FKX B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 7FKX GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 7FKX ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 7FKX MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 7FKX GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 7FKX ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 7FKX MET B -1 UNP P32357 EXPRESSION TAG SEQADV 7FKX ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 7FKX SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 7FKX SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 7FKX B UNP P32357 LEU 157 DELETION SEQADV 7FKX B UNP P32357 GLN 158 DELETION SEQADV 7FKX B UNP P32357 LYS 159 DELETION SEQADV 7FKX B UNP P32357 ALA 160 DELETION SEQADV 7FKX B UNP P32357 GLY 161 DELETION SEQADV 7FKX B UNP P32357 SER 162 DELETION SEQADV 7FKX B UNP P32357 LYS 163 DELETION SEQADV 7FKX B UNP P32357 MET 164 DELETION SEQADV 7FKX B UNP P32357 GLU 165 DELETION SEQADV 7FKX B UNP P32357 ALA 166 DELETION SEQADV 7FKX B UNP P32357 LYS 167 DELETION SEQADV 7FKX B UNP P32357 ASN 168 DELETION SEQADV 7FKX B UNP P32357 GLU 169 DELETION SEQADV 7FKX SER B 170 UNP P32357 ASP 170 CONFLICT SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU HET VDI A2101 14 HETNAM VDI 1-(4-CHLOROPHENYL)CYCLOBUTANE-1-CARBOXYLIC ACID FORMUL 3 VDI C11 H11 CL O2 FORMUL 4 HOH *68(H2 O) HELIX 1 AA1 ASN A 1836 SER A 1838 5 3 HELIX 2 AA2 ASN A 1839 PHE A 1844 1 6 HELIX 3 AA3 HIS A 1895 ALA A 1900 5 6 HELIX 4 AA4 ARG A 1904 LEU A 1924 1 21 HELIX 5 AA5 PRO A 1925 GLN A 1929 5 5 HELIX 6 AA6 ARG A 1937 ALA A 1939 5 3 HELIX 7 AA7 MET A 1940 MET A 1948 1 9 HELIX 8 AA8 PRO A 1964 SER A 1970 5 7 HELIX 9 AA9 ILE A 1971 ALA A 1981 1 11 HELIX 10 AB1 ASP A 1994 ARG A 1998 5 5 HELIX 11 AB2 SER A 2000 ASN A 2018 1 19 HELIX 12 AB3 ASN A 2018 SER A 2028 1 11 HELIX 13 AB4 THR A 2044 ASN A 2068 1 25 HELIX 14 AB5 ASP B 61 GLY B 65 5 5 HELIX 15 AB6 ASP B 85 ARG B 99 1 15 HELIX 16 AB7 ASP B 112 GLU B 119 1 8 HELIX 17 AB8 GLN B 122 VAL B 130 1 9 HELIX 18 AB9 THR B 146 LEU B 152 1 7 HELIX 19 AC1 ASP B 171 SER B 175 5 5 HELIX 20 AC2 HIS B 193 ASP B 200 1 8 HELIX 21 AC3 LYS B 201 THR B 207 1 7 HELIX 22 AC4 ASN B 216 GLY B 235 1 20 HELIX 23 AC5 ASN B 236 SER B 252 1 17 HELIX 24 AC6 PRO B 257 LEU B 275 1 19 HELIX 25 AC7 PRO B 276 GLN B 278 5 3 HELIX 26 AC8 TYR B 279 LEU B 284 1 6 HELIX 27 AC9 ASN B 285 SER B 295 1 11 HELIX 28 AD1 LEU B 302 TYR B 313 1 12 SHEET 1 AA1 6 ALA A1955 PRO A1958 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ALA A1955 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O PHE A1880 N ASP A1853 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O ILE A1894 N GLY A1877 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O PHE A1989 N LEU A1889 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ALA A1871 N HIS A1863 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 33 N VAL B 4 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N ILE B 17 O TYR B 20 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 TYR B 56 PHE B 60 -1 O TYR B 56 N PHE B 46 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 PHE B 67 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 82 -1 O MET B 81 N TYR B 68 CRYST1 89.185 82.332 92.957 90.00 107.83 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011213 0.000000 0.003606 0.00000 SCALE2 0.000000 0.012146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011300 0.00000