HEADER SPLICING 26-AUG-22 7FO2 TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX WITH TITLE 2 FRAGMENT P07G04 FROM THE F2X-UNIVERSAL LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1836-2090; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_TAXID: 559292; SOURCE 11 STRAIN: ATCC 204508 / S288C; SOURCE 12 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, U5 SNRNP KEYWDS 2 ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS REVDAT 2 30-NOV-22 7FO2 1 JRNL REVDAT 1 02-NOV-22 7FO2 0 JRNL AUTH T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS JRNL TITL LARGE-SCALE CRYSTALLOGRAPHIC FRAGMENT SCREENING EXPEDITES JRNL TITL 2 COMPOUND OPTIMIZATION AND IDENTIFIES PUTATIVE JRNL TITL 3 PROTEIN-PROTEIN INTERACTION SITES. JRNL REF J.MED.CHEM. V. 65 14630 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36260741 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01165 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 42894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6200 - 2.0100 0.99 0 2100 0.2406 0.2943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1833:1904) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3633 7.7797 25.9838 REMARK 3 T TENSOR REMARK 3 T11: 0.3921 T22: 0.4207 REMARK 3 T33: 0.4888 T12: 0.02 REMARK 3 T13: 0.0305 T23: 0 REMARK 3 L TENSOR REMARK 3 L11: 0.0804 L22: 0.4724 REMARK 3 L33: 0.0417 L12: -0.5411 REMARK 3 L13: -0.126 L23: -0.8873 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.1079 S13: -0.0117 REMARK 3 S21: -0.1079 S22: 0.0371 S23: -0.1218 REMARK 3 S31: -0.0117 S32: -0.1218 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1905:1964) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4543 11.9846 21.0211 REMARK 3 T TENSOR REMARK 3 T11: 0.4405 T22: 0.4616 REMARK 3 T33: 0.3862 T12: 0.0058 REMARK 3 T13: 0.0007 T23: 0.066 REMARK 3 L TENSOR REMARK 3 L11: 0.4073 L22: 0.7795 REMARK 3 L33: 0.1481 L12: 0.0524 REMARK 3 L13: 0.2988 L23: 0.3566 REMARK 3 S TENSOR REMARK 3 S11: 0.062 S12: -0.1736 S13: -0.0387 REMARK 3 S21: -0.1736 S22: -0.0026 S23: -0.0815 REMARK 3 S31: -0.0387 S32: -0.0815 S33: 0 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1965:2027) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2016 16.1871 36.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.4314 T22: 0.4006 REMARK 3 T33: 0.4331 T12: -0.0093 REMARK 3 T13: -0.0066 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 0.506 L22: 0.6554 REMARK 3 L33: 0.925 L12: 0.5527 REMARK 3 L13: -0.0209 L23: 0.2129 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: 0.357 S13: -0.0139 REMARK 3 S21: 0.357 S22: -0.1349 S23: -0.0504 REMARK 3 S31: -0.0139 S32: -0.0504 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 2028:2069) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1397 24.3469 37.2384 REMARK 3 T TENSOR REMARK 3 T11: 0.4652 T22: 0.4117 REMARK 3 T33: 0.6067 T12: -0.0381 REMARK 3 T13: -0.0694 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.2873 L22: 0.8874 REMARK 3 L33: 0.6957 L12: -0.0156 REMARK 3 L13: 0.1872 L23: -0.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.156 S12: 0.622 S13: -0.3898 REMARK 3 S21: 0.622 S22: -0.2938 S23: 0.3736 REMARK 3 S31: -0.3898 S32: 0.3736 S33: -0.0159 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:66) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8623 11.6063 -30.0072 REMARK 3 T TENSOR REMARK 3 T11: 0.4053 T22: 0.3868 REMARK 3 T33: 0.3653 T12: 0.0078 REMARK 3 T13: -0.0129 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.1054 L22: 0.4585 REMARK 3 L33: 0.72 L12: -1.0814 REMARK 3 L13: 0.3062 L23: -0.4329 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: -0.3467 S13: 0.2703 REMARK 3 S21: -0.3467 S22: -0.0673 S23: -0.0628 REMARK 3 S31: 0.2703 S32: -0.0628 S33: -0 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 67:137) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4986 7.2043 -28.0316 REMARK 3 T TENSOR REMARK 3 T11: 0.4566 T22: 0.4394 REMARK 3 T33: 0.4229 T12: -0.0151 REMARK 3 T13: -0.0253 T23: -0.038 REMARK 3 L TENSOR REMARK 3 L11: 1.0077 L22: 0.5332 REMARK 3 L33: 1.2692 L12: 0.3851 REMARK 3 L13: 0.0915 L23: -0.1791 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.2164 S13: 0.081 REMARK 3 S21: -0.2164 S22: 0.0544 S23: -0.2496 REMARK 3 S31: 0.081 S32: -0.2496 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 138:251) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3446 4.6476 -2.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.397 T22: 0.4985 REMARK 3 T33: 0.4012 T12: -0.0209 REMARK 3 T13: -0.0034 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: -0.1234 L22: 0.1972 REMARK 3 L33: 0.9374 L12: -0.3092 REMARK 3 L13: 0.5076 L23: 0.2147 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.0608 S13: 0.0902 REMARK 3 S21: 0.0608 S22: 0.1208 S23: -0.3386 REMARK 3 S31: 0.0902 S32: -0.3386 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 252:317) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4118 -0.8066 -11.277 REMARK 3 T TENSOR REMARK 3 T11: 0.44 T22: 0.4587 REMARK 3 T33: 0.468 T12: -0.0039 REMARK 3 T13: 0.0201 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.2087 L22: 0.4596 REMARK 3 L33: 1.0499 L12: -0.5793 REMARK 3 L13: -0.0975 L23: 0.3463 REMARK 3 S TENSOR REMARK 3 S11: 0.0269 S12: 0.0462 S13: 0.2039 REMARK 3 S21: 0.0462 S22: 0.2318 S23: 0.174 REMARK 3 S31: 0.2039 S32: 0.174 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1001405131. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 44.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.050 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 44.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.03100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 51.15 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG4000, 3% DMSO, 0.1 M TRIS, PH REMARK 280 8.5, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.69150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.12900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.69150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.12900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN B 230 CA CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 2069 O HOH A 2101 1.96 REMARK 500 OD2 ASP B 111 O HOH B 501 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 5 N PRO B 5 CA 0.182 REMARK 500 GLU B 83 CD GLU B 83 OE1 -0.093 REMARK 500 GLU B 83 CD GLU B 83 OE2 -0.100 REMARK 500 VAL B 140 CB VAL B 140 CG1 0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 5 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO B 5 CA - N - CD ANGL. DEV. = -10.7 DEGREES REMARK 500 PRO B 5 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 ASP B 72 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1839 55.87 -108.99 REMARK 500 ASN A1845 -167.88 -74.07 REMARK 500 PRO A1964 32.94 -81.80 REMARK 500 ASP A1993 -122.67 40.34 REMARK 500 ASN A2068 87.15 63.59 REMARK 500 ASP B 18 -127.02 47.76 REMARK 500 MET B 54 88.14 60.90 REMARK 500 MET B 54 85.16 61.22 REMARK 500 LYS B 132 84.96 -162.04 REMARK 500 HIS B 174 51.06 -111.55 REMARK 500 LYS B 184 58.70 -113.67 REMARK 500 LYS B 215 -38.62 75.63 REMARK 500 LEU B 316 5.56 -67.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET B 54 ARG B 55 146.72 REMARK 500 MET B 54 ARG B 55 149.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FO2 A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 7FO2 B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 7FO2 GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 7FO2 ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 7FO2 MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 7FO2 GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 7FO2 ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 7FO2 MET B -1 UNP P32357 EXPRESSION TAG SEQADV 7FO2 ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 7FO2 SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 7FO2 SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 7FO2 B UNP P32357 LEU 157 DELETION SEQADV 7FO2 B UNP P32357 GLN 158 DELETION SEQADV 7FO2 B UNP P32357 LYS 159 DELETION SEQADV 7FO2 B UNP P32357 ALA 160 DELETION SEQADV 7FO2 B UNP P32357 GLY 161 DELETION SEQADV 7FO2 B UNP P32357 SER 162 DELETION SEQADV 7FO2 B UNP P32357 LYS 163 DELETION SEQADV 7FO2 B UNP P32357 MET 164 DELETION SEQADV 7FO2 B UNP P32357 GLU 165 DELETION SEQADV 7FO2 B UNP P32357 ALA 166 DELETION SEQADV 7FO2 B UNP P32357 LYS 167 DELETION SEQADV 7FO2 B UNP P32357 ASN 168 DELETION SEQADV 7FO2 B UNP P32357 GLU 169 DELETION SEQADV 7FO2 SER B 170 UNP P32357 ASP 170 CONFLICT SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU HET W0X B 401 16 HET W0X B 402 16 HET DMS B 403 10 HETNAM W0X 3-[(3-BROMOPHENYL)METHANESULFONYL]PROPANOIC ACID HETNAM DMS DIMETHYL SULFOXIDE FORMUL 3 W0X 2(C10 H11 BR O4 S) FORMUL 5 DMS C2 H6 O S FORMUL 6 HOH *55(H2 O) HELIX 1 AA1 TYR A 1840 ASN A 1845 5 6 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 ARG B 99 1 15 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 VAL B 130 1 9 HELIX 17 AB8 GLN B 148 LEU B 152 5 5 HELIX 18 AB9 ASP B 171 ALA B 173 5 3 HELIX 19 AC1 HIS B 193 ASP B 200 1 8 HELIX 20 AC2 LYS B 201 THR B 207 1 7 HELIX 21 AC3 ASN B 216 GLY B 235 1 20 HELIX 22 AC4 ASN B 236 SER B 252 1 17 HELIX 23 AC5 PRO B 257 LEU B 275 1 19 HELIX 24 AC6 PRO B 276 GLN B 278 5 3 HELIX 25 AC7 TYR B 279 LEU B 284 1 6 HELIX 26 AC8 ASN B 285 SER B 295 1 11 HELIX 27 AC9 LEU B 302 TYR B 313 1 12 HELIX 28 AD1 PRO B 314 LEU B 317 5 4 SHEET 1 AA1 6 ALA A1955 ARG A1957 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ALA A1955 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O LEU A1882 N PHE A1851 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O PHE A1890 N THR A1881 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O GLN A1985 N ILE A1893 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O LYS A1873 N THR A1861 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 33 N VAL B 4 SHEET 3 AA3 3 MET B 102 SER B 104 1 O VAL B 103 N GLY B 32 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N VAL B 13 O VAL B 24 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O HIS B 45 N GLY B 16 SHEET 4 AA4 5 ASN B 51 PHE B 60 -1 O TYR B 58 N ILE B 44 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O SER B 138 N TRP B 59 SHEET 1 AA5 2 ASN B 66 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 83 -1 O LEU B 77 N ASP B 72 SHEET 1 AA6 2 THR B 145 THR B 146 0 SHEET 2 AA6 2 SER B 175 LEU B 176 1 O LEU B 176 N THR B 145 CRYST1 89.383 82.258 93.875 90.00 108.08 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011188 0.000000 0.003652 0.00000 SCALE2 0.000000 0.012157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011206 0.00000