HEADER SPLICING 26-AUG-22 7FOF TITLE PANDDA ANALYSIS GROUP DEPOSITION -- AAR2/RNASEH IN COMPLEX WITH TITLE 2 FRAGMENT P08A10 FROM THE F2X-UNIVERSAL LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1836-2090; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: A1 CISTRON-SPLICING FACTOR AAR2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 GENE: PRP8, DBF3, DNA39, RNA8, SLT21, USA2, YHR165C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_TAXID: 559292; SOURCE 11 STRAIN: ATCC 204508 / S288C; SOURCE 12 GENE: AAR2, YBL074C, YBL06.06, YBL0611; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMAX, FRAGMAXAPP, FRAGMENT SCREENING, RNASEH LIKE DOMAIN, U5 SNRNP KEYWDS 2 ASSEMBLY, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS REVDAT 2 30-NOV-22 7FOF 1 JRNL REVDAT 1 02-NOV-22 7FOF 0 JRNL AUTH T.BARTHEL,J.WOLLENHAUPT,G.M.A.LIMA,M.C.WAHL,M.S.WEISS JRNL TITL LARGE-SCALE CRYSTALLOGRAPHIC FRAGMENT SCREENING EXPEDITES JRNL TITL 2 COMPOUND OPTIMIZATION AND IDENTIFIES PUTATIVE JRNL TITL 3 PROTEIN-PROTEIN INTERACTION SITES. JRNL REF J.MED.CHEM. V. 65 14630 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36260741 JRNL DOI 10.1021/ACS.JMEDCHEM.2C01165 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0300 - 1.7700 1.00 0 2099 0.2443 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1833:1904) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8552 7.8865 25.775 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 0.3469 REMARK 3 T33: 0.3817 T12: -0.0225 REMARK 3 T13: -0.0039 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 1.7227 L22: 0.3203 REMARK 3 L33: 1.0948 L12: -0.0004 REMARK 3 L13: -0.1079 L23: -0.2762 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: -0.0819 S13: -0.1496 REMARK 3 S21: -0.0819 S22: -0.0325 S23: -0.0718 REMARK 3 S31: -0.1496 S32: -0.0718 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 1905:1964) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8543 11.9365 20.9152 REMARK 3 T TENSOR REMARK 3 T11: 0.4164 T22: 0.4294 REMARK 3 T33: 0.3226 T12: 0.0462 REMARK 3 T13: 0.0033 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.1851 L22: 1.3338 REMARK 3 L33: 1.0192 L12: 0.006 REMARK 3 L13: 0.9212 L23: -0.6842 REMARK 3 S TENSOR REMARK 3 S11: 0.116 S12: -0.3102 S13: 0.0257 REMARK 3 S21: -0.3102 S22: -0.0741 S23: -0.139 REMARK 3 S31: 0.0257 S32: -0.139 S33: -0 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 1965:2027) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7564 16.4781 35.5378 REMARK 3 T TENSOR REMARK 3 T11: 0.3321 T22: 0.3828 REMARK 3 T33: 0.385 T12: -0.0198 REMARK 3 T13: 0.0004 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.5668 L22: 0.3451 REMARK 3 L33: 1.7883 L12: -0.1408 REMARK 3 L13: -0.249 L23: 0.1434 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: 0.118 S13: 0.0731 REMARK 3 S21: 0.118 S22: -0.117 S23: 0.1254 REMARK 3 S31: 0.0731 S32: 0.1254 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 2028:2069) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5536 24.5626 36.4708 REMARK 3 T TENSOR REMARK 3 T11: 0.3895 T22: 0.4926 REMARK 3 T33: 0.509 T12: -0.1328 REMARK 3 T13: -0.0262 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.8624 L22: 0.8839 REMARK 3 L33: 0.7824 L12: 0.0548 REMARK 3 L13: 0.1054 L23: 0.3141 REMARK 3 S TENSOR REMARK 3 S11: 0.2918 S12: 0.4653 S13: -0.3795 REMARK 3 S21: 0.4653 S22: 0.0038 S23: 0.6967 REMARK 3 S31: -0.3795 S32: 0.6967 S33: 0.0106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 1:66) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6987 11.6514 -29.6731 REMARK 3 T TENSOR REMARK 3 T11: 0.3991 T22: 0.3707 REMARK 3 T33: 0.3947 T12: -0.0031 REMARK 3 T13: -0.0239 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 0.1502 L22: 0.9676 REMARK 3 L33: 0.9939 L12: -0.6323 REMARK 3 L13: 0.1433 L23: -0.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.1898 S13: 0.1964 REMARK 3 S21: -0.1898 S22: -0.0927 S23: -0.1459 REMARK 3 S31: 0.1964 S32: -0.1459 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 67:137) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2594 7.2515 -27.7606 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.4037 REMARK 3 T33: 0.417 T12: -0.0157 REMARK 3 T13: -0.0129 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 1.251 L22: 0.571 REMARK 3 L33: 2.2746 L12: 0.6707 REMARK 3 L13: 0.2085 L23: 0.1259 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: -0.3009 S13: 0.1139 REMARK 3 S21: -0.3009 S22: -0.0784 S23: -0.3543 REMARK 3 S31: 0.1139 S32: -0.3543 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 138:251) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7893 4.4975 -2.5904 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: 0.4496 REMARK 3 T33: 0.3554 T12: -0.0246 REMARK 3 T13: 0.0248 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: -0.0417 L22: 0.7564 REMARK 3 L33: 1.1459 L12: -0.5968 REMARK 3 L13: 0.779 L23: 0.1134 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: 0.1874 S13: 0.0133 REMARK 3 S21: 0.1874 S22: -0.0028 S23: -0.2951 REMARK 3 S31: 0.0133 S32: -0.2951 S33: 0 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 252:317) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8092 -0.8173 -10.8128 REMARK 3 T TENSOR REMARK 3 T11: 0.4192 T22: 0.4157 REMARK 3 T33: 0.4294 T12: 0.0195 REMARK 3 T13: 0.0034 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.0934 L22: 0.8021 REMARK 3 L33: 1.4831 L12: -0.5846 REMARK 3 L13: -0.3057 L23: 1.3056 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.035 S13: 0.3895 REMARK 3 S21: 0.035 S22: 0.1272 S23: 0.1579 REMARK 3 S31: 0.3895 S32: 0.1579 S33: -0 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1001405144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61581 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 41.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.960 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 41.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.82 REMARK 200 R MERGE FOR SHELL (I) : 0.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 56.45 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG4000, 3% DMSO, 0.1 M TRIS, PH REMARK 280 8.5, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.02350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.02800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.02350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.02800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2070 REMARK 465 ILE A 2071 REMARK 465 SER A 2072 REMARK 465 ALA A 2073 REMARK 465 LEU A 2074 REMARK 465 THR A 2075 REMARK 465 GLN A 2076 REMARK 465 THR A 2077 REMARK 465 GLU A 2078 REMARK 465 ILE A 2079 REMARK 465 LYS A 2080 REMARK 465 ASP A 2081 REMARK 465 ILE A 2082 REMARK 465 ILE A 2083 REMARK 465 LEU A 2084 REMARK 465 GLY A 2085 REMARK 465 GLN A 2086 REMARK 465 ASN A 2087 REMARK 465 ILE A 2088 REMARK 465 LYS A 2089 REMARK 465 ALA A 2090 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 SER B 166 REMARK 465 SER B 167 REMARK 465 SER B 168 REMARK 465 SER B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 152 CG CD1 CD2 REMARK 470 SER B 170 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 1962 HH12 ARG A 2013 1.56 REMARK 500 O PHE A 1844 HZ3 LYS A 1885 1.60 REMARK 500 O ARG A 1962 NH1 ARG A 2013 2.10 REMARK 500 O HOH A 2134 O HOH A 2138 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A1878 CB CYS A1878 SG -0.136 REMARK 500 TRP A2040 CZ3 TRP A2040 CH2 0.103 REMARK 500 TYR B 58 CE2 TYR B 58 CD2 0.116 REMARK 500 TYR B 105 CD1 TYR B 105 CE1 0.149 REMARK 500 TYR B 178 CZ TYR B 178 CE2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A1986 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1839 43.34 -103.25 REMARK 500 ARG A1962 55.36 -100.82 REMARK 500 PRO A1964 33.08 -90.36 REMARK 500 ASP A1993 -129.36 52.77 REMARK 500 ASN A2018 85.00 -154.06 REMARK 500 ASN A2018 85.00 -158.42 REMARK 500 ASN A2068 80.52 49.04 REMARK 500 SER B 8 -172.74 -174.50 REMARK 500 ASP B 18 -137.36 46.17 REMARK 500 MET B 54 84.82 62.60 REMARK 500 MET B 54 84.50 61.02 REMARK 500 LYS B 132 78.61 -156.17 REMARK 500 HIS B 174 40.98 -107.25 REMARK 500 LYS B 184 66.38 -114.27 REMARK 500 LYS B 215 -44.09 75.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 7FOF A 1836 2090 UNP P33334 PRP8_YEAST 1836 2090 DBREF 7FOF B 1 317 UNP P32357 AAR2_YEAST 1 317 SEQADV 7FOF GLY A 1833 UNP P33334 EXPRESSION TAG SEQADV 7FOF ALA A 1834 UNP P33334 EXPRESSION TAG SEQADV 7FOF MET A 1835 UNP P33334 EXPRESSION TAG SEQADV 7FOF GLY B -3 UNP P32357 EXPRESSION TAG SEQADV 7FOF ALA B -2 UNP P32357 EXPRESSION TAG SEQADV 7FOF MET B -1 UNP P32357 EXPRESSION TAG SEQADV 7FOF ALA B 0 UNP P32357 EXPRESSION TAG SEQADV 7FOF SER B 166 UNP P32357 LEU 153 CONFLICT SEQADV 7FOF SER B 167 UNP P32357 LYS 154 CONFLICT SEQADV 7FOF B UNP P32357 LEU 157 DELETION SEQADV 7FOF B UNP P32357 GLN 158 DELETION SEQADV 7FOF B UNP P32357 LYS 159 DELETION SEQADV 7FOF B UNP P32357 ALA 160 DELETION SEQADV 7FOF B UNP P32357 GLY 161 DELETION SEQADV 7FOF B UNP P32357 SER 162 DELETION SEQADV 7FOF B UNP P32357 LYS 163 DELETION SEQADV 7FOF B UNP P32357 MET 164 DELETION SEQADV 7FOF B UNP P32357 GLU 165 DELETION SEQADV 7FOF B UNP P32357 ALA 166 DELETION SEQADV 7FOF B UNP P32357 LYS 167 DELETION SEQADV 7FOF B UNP P32357 ASN 168 DELETION SEQADV 7FOF B UNP P32357 GLU 169 DELETION SEQADV 7FOF SER B 170 UNP P32357 ASP 170 CONFLICT SEQRES 1 A 258 GLY ALA MET ASN SER SER ASN TYR ALA GLU LEU PHE ASN SEQRES 2 A 258 ASN ASP ILE LYS LEU PHE VAL ASP ASP THR ASN VAL TYR SEQRES 3 A 258 ARG VAL THR VAL HIS LYS THR PHE GLU GLY ASN VAL ALA SEQRES 4 A 258 THR LYS ALA ILE ASN GLY CYS ILE PHE THR LEU ASN PRO SEQRES 5 A 258 LYS THR GLY HIS LEU PHE LEU LYS ILE ILE HIS THR SER SEQRES 6 A 258 VAL TRP ALA GLY GLN LYS ARG LEU SER GLN LEU ALA LYS SEQRES 7 A 258 TRP LYS THR ALA GLU GLU VAL SER ALA LEU VAL ARG SER SEQRES 8 A 258 LEU PRO LYS GLU GLU GLN PRO LYS GLN ILE ILE VAL THR SEQRES 9 A 258 ARG LYS ALA MET LEU ASP PRO LEU GLU VAL HIS MET LEU SEQRES 10 A 258 ASP PHE PRO ASN ILE ALA ILE ARG PRO THR GLU LEU ARG SEQRES 11 A 258 LEU PRO PHE SER ALA ALA MET SER ILE ASP LYS LEU SER SEQRES 12 A 258 ASP VAL VAL MET LYS ALA THR GLU PRO GLN MET VAL LEU SEQRES 13 A 258 PHE ASN ILE TYR ASP ASP TRP LEU ASP ARG ILE SER SER SEQRES 14 A 258 TYR THR ALA PHE SER ARG LEU THR LEU LEU LEU ARG ALA SEQRES 15 A 258 LEU LYS THR ASN GLU GLU SER ALA LYS MET ILE LEU LEU SEQRES 16 A 258 SER ASP PRO THR ILE THR ILE LYS SER TYR HIS LEU TRP SEQRES 17 A 258 PRO SER PHE THR ASP GLU GLN TRP ILE THR ILE GLU SER SEQRES 18 A 258 GLN MET ARG ASP LEU ILE LEU THR GLU TYR GLY ARG LYS SEQRES 19 A 258 TYR ASN VAL ASN ILE SER ALA LEU THR GLN THR GLU ILE SEQRES 20 A 258 LYS ASP ILE ILE LEU GLY GLN ASN ILE LYS ALA SEQRES 1 B 308 GLY ALA MET ALA MET ASN THR VAL PRO PHE THR SER ALA SEQRES 2 B 308 PRO ILE GLU VAL THR ILE GLY ILE ASP GLN TYR SER PHE SEQRES 3 B 308 ASN VAL LYS GLU ASN GLN PRO PHE HIS GLY ILE LYS ASP SEQRES 4 B 308 ILE PRO ILE GLY HIS VAL HIS VAL ILE HIS PHE GLN HIS SEQRES 5 B 308 ALA ASP ASN SER SER MET ARG TYR GLY TYR TRP PHE ASP SEQRES 6 B 308 CYS ARG MET GLY ASN PHE TYR ILE GLN TYR ASP PRO LYS SEQRES 7 B 308 ASP GLY LEU TYR LYS MET MET GLU GLU ARG ASP GLY ALA SEQRES 8 B 308 LYS PHE GLU ASN ILE VAL HIS ASN PHE LYS GLU ARG GLN SEQRES 9 B 308 MET MET VAL SER TYR PRO LYS ILE ASP GLU ASP ASP THR SEQRES 10 B 308 TRP TYR ASN LEU THR GLU PHE VAL GLN MET ASP LYS ILE SEQRES 11 B 308 ARG LYS ILE VAL ARG LYS ASP GLU ASN GLN PHE SER TYR SEQRES 12 B 308 VAL ASP SER SER MET THR THR VAL GLN GLU ASN GLU LEU SEQRES 13 B 308 SER SER SER SER SER ASP PRO ALA HIS SER LEU ASN TYR SEQRES 14 B 308 THR VAL ILE ASN PHE LYS SER ARG GLU ALA ILE ARG PRO SEQRES 15 B 308 GLY HIS GLU MET GLU ASP PHE LEU ASP LYS SER TYR TYR SEQRES 16 B 308 LEU ASN THR VAL MET LEU GLN GLY ILE PHE LYS ASN SER SEQRES 17 B 308 SER ASN TYR PHE GLY GLU LEU GLN PHE ALA PHE LEU ASN SEQRES 18 B 308 ALA MET PHE PHE GLY ASN TYR GLY SER SER LEU GLN TRP SEQRES 19 B 308 HIS ALA MET ILE GLU LEU ILE CYS SER SER ALA THR VAL SEQRES 20 B 308 PRO LYS HIS MET LEU ASP LYS LEU ASP GLU ILE LEU TYR SEQRES 21 B 308 TYR GLN ILE LYS THR LEU PRO GLU GLN TYR SER ASP ILE SEQRES 22 B 308 LEU LEU ASN GLU ARG VAL TRP ASN ILE CYS LEU TYR SER SEQRES 23 B 308 SER PHE GLN LYS ASN SER LEU HIS ASN THR GLU LYS ILE SEQRES 24 B 308 MET GLU ASN LYS TYR PRO GLU LEU LEU HET W5L B 401 14 HETNAM W5L (2R)-1-AMINO-3-(4-CHLORO-3-METHYLPHENOXY)PROPAN-2-OL FORMUL 3 W5L C10 H14 CL N O2 FORMUL 4 HOH *88(H2 O) HELIX 1 AA1 ASN A 1836 ASN A 1845 5 10 HELIX 2 AA2 HIS A 1895 ALA A 1900 5 6 HELIX 3 AA3 ARG A 1904 LEU A 1924 1 21 HELIX 4 AA4 PRO A 1925 GLN A 1929 5 5 HELIX 5 AA5 ARG A 1937 ALA A 1939 5 3 HELIX 6 AA6 MET A 1940 MET A 1948 1 9 HELIX 7 AA7 PRO A 1964 SER A 1970 5 7 HELIX 8 AA8 ILE A 1971 ALA A 1981 1 11 HELIX 9 AA9 ASP A 1994 ARG A 1998 5 5 HELIX 10 AB1 SER A 2000 ASN A 2018 1 19 HELIX 11 AB2 ASN A 2018 SER A 2028 1 11 HELIX 12 AB3 THR A 2044 ASN A 2068 1 25 HELIX 13 AB4 ASP B 61 GLY B 65 5 5 HELIX 14 AB5 ASP B 85 GLN B 100 1 16 HELIX 15 AB6 ASP B 112 GLU B 119 1 8 HELIX 16 AB7 GLN B 122 VAL B 130 1 9 HELIX 17 AB8 THR B 146 GLU B 151 1 6 HELIX 18 AB9 HIS B 193 ASP B 200 1 8 HELIX 19 AC1 LYS B 201 THR B 207 1 7 HELIX 20 AC2 ASN B 216 GLY B 235 1 20 HELIX 21 AC3 ASN B 236 SER B 252 1 17 HELIX 22 AC4 PRO B 257 LEU B 275 1 19 HELIX 23 AC5 PRO B 276 GLN B 278 5 3 HELIX 24 AC6 TYR B 279 LEU B 284 1 6 HELIX 25 AC7 ASN B 285 SER B 295 1 11 HELIX 26 AC8 LEU B 302 TYR B 313 1 12 SHEET 1 AA1 6 ALA A1955 ARG A1957 0 SHEET 2 AA1 6 GLN A1932 VAL A1935 1 N ILE A1933 O ARG A1957 SHEET 3 AA1 6 LYS A1849 ASP A1853 1 N LEU A1850 O ILE A1934 SHEET 4 AA1 6 GLY A1877 LEU A1882 -1 O PHE A1880 N ASP A1853 SHEET 5 AA1 6 HIS A1888 ILE A1894 -1 O ILE A1894 N GLY A1877 SHEET 6 AA1 6 GLN A1985 ASN A1990 -1 O PHE A1989 N LEU A1889 SHEET 1 AA2 2 ARG A1859 LYS A1864 0 SHEET 2 AA2 2 VAL A1870 ILE A1875 -1 O ALA A1871 N HIS A1863 SHEET 1 AA3 3 ASN B 2 PRO B 5 0 SHEET 2 AA3 3 GLY B 32 ILE B 36 -1 O ILE B 36 N ASN B 2 SHEET 3 AA3 3 VAL B 103 SER B 104 1 O VAL B 103 N LYS B 34 SHEET 1 AA4 5 TYR B 20 VAL B 24 0 SHEET 2 AA4 5 VAL B 13 ILE B 17 -1 N ILE B 15 O PHE B 22 SHEET 3 AA4 5 HIS B 42 HIS B 48 -1 O GLN B 47 N THR B 14 SHEET 4 AA4 5 TYR B 56 PHE B 60 -1 O TYR B 56 N PHE B 46 SHEET 5 AA4 5 SER B 138 ASP B 141 -1 O VAL B 140 N GLY B 57 SHEET 1 AA5 2 PHE B 67 ASP B 72 0 SHEET 2 AA5 2 LEU B 77 GLU B 82 -1 O LEU B 77 N ASP B 72 CRYST1 88.047 82.056 93.109 90.00 107.84 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011358 0.000000 0.003655 0.00000 SCALE2 0.000000 0.012187 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011283 0.00000