data_7FRD # _entry.id 7FRD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7FRD pdb_00007frd 10.2210/pdb7frd/pdb WWPDB D_1001405250 ? ? # _pdbx_database_status.entry_id 7FRD _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2022-10-20 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Correy, G.J.' 1 'Fraser, J.S.' 2 # _citation.id primary _citation.title 'Ligand screen against SARS-CoV-2 NSP3 macrodomain' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Correy, G.J.' ? 1 primary 'Fraser, J.S.' ? 2 # _cell.entry_id 7FRD _cell.length_a 88.687 _cell.length_b 88.687 _cell.length_c 39.422 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7FRD _symmetry.Int_Tables_number 78 _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-structural protein 3' 18178.766 2 '3.4.19.121, 3.4.22.-' ? ? 'HIS6 purification tag and linker (MHHHHHHSSGVDLGTENLYFQ) cleaved with TEV protease' 2 non-polymer syn '3-phenyl-N-{(2S)-1-[(7H-purin-6-yl)amino]butan-2-yl}propanamide' 338.407 1 ? ? ? ? 3 water nat water 18.015 437 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'nsp3, PL2-PRO, Papain-like protease, Papain-like proteinase, PL-PRO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_seq_one_letter_code_can ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 VAL n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 THR n 1 14 ASP n 1 15 ASN n 1 16 VAL n 1 17 TYR n 1 18 ILE n 1 19 LYS n 1 20 ASN n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 VAL n 1 42 TYR n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 ASN n 1 60 ALA n 1 61 MET n 1 62 GLN n 1 63 VAL n 1 64 GLU n 1 65 SER n 1 66 ASP n 1 67 ASP n 1 68 TYR n 1 69 ILE n 1 70 ALA n 1 71 THR n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 VAL n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 HIS n 1 92 CYS n 1 93 LEU n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 GLU n 1 115 ASN n 1 116 PHE n 1 117 ASN n 1 118 GLN n 1 119 HIS n 1 120 GLU n 1 121 VAL n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 PHE n 1 133 GLY n 1 134 ALA n 1 135 ASP n 1 136 PRO n 1 137 ILE n 1 138 HIS n 1 139 SER n 1 140 LEU n 1 141 ARG n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 ASP n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 THR n 1 150 ASN n 1 151 VAL n 1 152 TYR n 1 153 LEU n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 ASP n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 ASP n 1 163 LYS n 1 164 LEU n 1 165 VAL n 1 166 SER n 1 167 SER n 1 168 PHE n 1 169 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV LSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD KLVSSFL ; _struct_ref.pdbx_align_begin 1025 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7FRD A 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 2 1 7FRD B 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7FRD SER A 1 ? UNP P0DTD1 ? ? 'expression tag' 1 1 1 7FRD MET A 2 ? UNP P0DTD1 ? ? 'expression tag' 2 2 2 7FRD SER B 1 ? UNP P0DTD1 ? ? 'expression tag' 1 3 2 7FRD MET B 2 ? UNP P0DTD1 ? ? 'expression tag' 2 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 WY6 non-polymer . '3-phenyl-N-{(2S)-1-[(7H-purin-6-yl)amino]butan-2-yl}propanamide' ? 'C18 H22 N6 O' 338.407 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 7FRD # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.41 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '100 mM CHES, 28% PEG 3000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.pdbx_collection_date 2022-07-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.77487 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL12-1' _diffrn_source.pdbx_wavelength_list 0.77487 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL12-1 _diffrn_source.pdbx_wavelength ? # _reflns.d_resolution_high 1.000 _reflns.d_resolution_low 44.344 _reflns.pdbx_number_measured_all 1124792 _reflns.number_obs 164604 _reflns.pdbx_Rmerge_I_obs 0.116 _reflns.pdbx_netI_over_sigmaI 8.310 _reflns.pdbx_chi_squared 0.721 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_I -3.000 _reflns.pdbx_Rrim_I_all 0.126 _reflns.pdbx_CC_half 0.992 _reflns.B_iso_Wilson_estimate 12.170 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 7FRD _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.000 1.060 176629 ? 26378 0 0.902 1.690 ? ? ? ? ? 26653 ? ? ? ? ? 99.000 0.979 ? 0.873 1 2 1.060 1.130 170999 ? 25029 0 0.433 3.380 ? ? ? ? ? 25031 ? ? ? ? ? 100.000 0.470 ? 0.960 1 3 1.130 1.220 150778 ? 22974 0 0.251 5.270 ? ? ? ? ? 23322 ? ? ? ? ? 98.500 0.272 ? 0.978 1 4 1.220 1.340 152499 ? 21483 0 0.185 7.430 ? ? ? ? ? 21484 ? ? ? ? ? 100.000 0.200 ? 0.985 1 5 1.340 1.500 135096 ? 19446 0 0.144 9.950 ? ? ? ? ? 19457 ? ? ? ? ? 99.900 0.157 ? 0.985 1 6 1.500 1.730 112536 ? 17061 0 0.119 13.010 ? ? ? ? ? 17215 ? ? ? ? ? 99.100 0.129 ? 0.987 1 7 1.730 2.120 105413 ? 14567 0 0.113 16.340 ? ? ? ? ? 14589 ? ? ? ? ? 99.800 0.122 ? 0.989 1 8 2.120 2.990 76711 ? 11291 0 0.110 17.110 ? ? ? ? ? 11330 ? ? ? ? ? 99.700 0.119 ? 0.986 1 9 2.990 44.344 44131 ? 6375 0 0.111 17.630 ? ? ? ? ? 6416 ? ? ? ? ? 99.400 0.119 ? 0.987 # _refine.entry_id 7FRD _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.0000 _refine.ls_d_res_low 29.5600 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.4600 _refine.ls_number_reflns_obs 164534 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1464 _refine.ls_R_factor_R_work 0.1456 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1620 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_number_reflns_R_free 7923 _refine.ls_number_reflns_R_work 156611 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 19.7170 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0900 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 65.020 _refine.B_iso_min 7.530 _refine.pdbx_overall_phase_error 16.7900 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.0000 _refine_hist.d_res_low 29.5600 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 437 _refine_hist.number_atoms_total 3026 _refine_hist.pdbx_number_residues_total 336 _refine_hist.pdbx_B_iso_mean_ligand 18.01 _refine_hist.pdbx_B_iso_mean_solvent 33.06 _refine_hist.pdbx_number_atoms_protein 2542 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' c_bond_d ? 0.005 ? ? ? 'X-RAY DIFFRACTION' c_angle_deg ? 1.040 ? ? ? 'X-RAY DIFFRACTION' c_dihedral_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION' c_improper_angle_d ? ? ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 1.030 1.500 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 1.567 2.000 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 2.142 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 3.193 2.500 ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 1.0000 1.0100 30 95.0000 5048 . 0.3509 0.3245 . 263 . 5311 . 'X-RAY DIFFRACTION' 1.0100 1.0200 30 100.0000 5169 . 0.2816 0.2936 . 232 . 5401 . 'X-RAY DIFFRACTION' 1.0200 1.0400 30 100.0000 5242 . 0.2541 0.2703 . 264 . 5506 . 'X-RAY DIFFRACTION' 1.0400 1.0500 30 100.0000 5171 . 0.2218 0.2377 . 271 . 5442 . 'X-RAY DIFFRACTION' 1.0500 1.0600 30 100.0000 5187 . 0.1991 0.2195 . 321 . 5508 . 'X-RAY DIFFRACTION' 1.0600 1.0800 30 100.0000 5240 . 0.1810 0.2064 . 249 . 5489 . 'X-RAY DIFFRACTION' 1.0800 1.0900 30 100.0000 5223 . 0.1673 0.1925 . 258 . 5481 . 'X-RAY DIFFRACTION' 1.0900 1.1100 30 100.0000 5208 . 0.1581 0.1817 . 248 . 5456 . 'X-RAY DIFFRACTION' 1.1100 1.1300 30 100.0000 5248 . 0.1536 0.1618 . 273 . 5521 . 'X-RAY DIFFRACTION' 1.1300 1.1400 30 100.0000 5187 . 0.1535 0.1782 . 243 . 5430 . 'X-RAY DIFFRACTION' 1.1400 1.1600 30 100.0000 5265 . 0.1438 0.1783 . 272 . 5537 . 'X-RAY DIFFRACTION' 1.1600 1.1900 30 99.0000 5148 . 0.1388 0.1605 . 255 . 5403 . 'X-RAY DIFFRACTION' 1.1900 1.2100 30 95.0000 4932 . 0.1342 0.1533 . 272 . 5204 . 'X-RAY DIFFRACTION' 1.2100 1.2300 30 100.0000 5309 . 0.1302 0.1514 . 222 . 5531 . 'X-RAY DIFFRACTION' 1.2300 1.2600 30 100.0000 5181 . 0.1271 0.1590 . 263 . 5444 . 'X-RAY DIFFRACTION' 1.2600 1.2900 30 100.0000 5255 . 0.1275 0.1464 . 275 . 5530 . 'X-RAY DIFFRACTION' 1.2900 1.3200 30 100.0000 5203 . 0.1270 0.1551 . 287 . 5490 . 'X-RAY DIFFRACTION' 1.3200 1.3600 30 100.0000 5249 . 0.1295 0.1527 . 277 . 5526 . 'X-RAY DIFFRACTION' 1.3600 1.4000 30 100.0000 5234 . 0.1287 0.1519 . 253 . 5487 . 'X-RAY DIFFRACTION' 1.4000 1.4400 30 100.0000 5226 . 0.1307 0.1403 . 262 . 5488 . 'X-RAY DIFFRACTION' 1.4400 1.4900 30 100.0000 5286 . 0.1316 0.1414 . 245 . 5531 . 'X-RAY DIFFRACTION' 1.4900 1.5500 30 100.0000 5197 . 0.1233 0.1328 . 285 . 5482 . 'X-RAY DIFFRACTION' 1.5500 1.6200 30 100.0000 5251 . 0.1262 0.1419 . 265 . 5516 . 'X-RAY DIFFRACTION' 1.6200 1.7100 30 98.0000 5166 . 0.1328 0.1518 . 242 . 5408 . 'X-RAY DIFFRACTION' 1.7100 1.8200 30 100.0000 5248 . 0.1392 0.1470 . 253 . 5501 . 'X-RAY DIFFRACTION' 1.8200 1.9600 30 100.0000 5266 . 0.1378 0.1450 . 282 . 5548 . 'X-RAY DIFFRACTION' 1.9600 2.1500 30 100.0000 5270 . 0.1417 0.1477 . 285 . 5555 . 'X-RAY DIFFRACTION' 2.1500 2.4700 30 100.0000 5270 . 0.1416 0.1553 . 286 . 5556 . 'X-RAY DIFFRACTION' 2.4700 3.1100 30 99.0000 5269 . 0.1484 0.1745 . 252 . 5521 . 'X-RAY DIFFRACTION' 3.1100 29.5600 30 100.0000 5463 . 0.1521 0.1713 . 268 . 5731 . 'X-RAY DIFFRACTION' # _struct.entry_id 7FRD _struct.title 'PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with PTERA_A25A - (S) isomer' _struct.pdbx_CASP_flag ? _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7FRD _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'Macrodomain, ADP-ribose, SARS-CoV-2, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 22 ? LYS A 31 ? ASP A 22 LYS A 31 1 ? 10 HELX_P HELX_P2 AA2 GLY A 47 ? THR A 57 ? GLY A 47 THR A 57 1 ? 11 HELX_P HELX_P3 AA3 ASN A 59 ? GLY A 73 ? ASN A 59 GLY A 73 1 ? 15 HELX_P HELX_P4 AA4 ASN A 99 ? GLY A 103 ? ASN A 99 GLY A 103 5 ? 5 HELX_P HELX_P5 AA5 GLN A 107 ? ASN A 115 ? GLN A 107 ASN A 115 1 ? 9 HELX_P HELX_P6 AA6 PHE A 116 ? HIS A 119 ? PHE A 116 HIS A 119 5 ? 4 HELX_P HELX_P7 AA7 ALA A 129 ? GLY A 133 ? ALA A 129 GLY A 133 5 ? 5 HELX_P HELX_P8 AA8 ASP A 135 ? VAL A 147 ? ASP A 135 VAL A 147 1 ? 13 HELX_P HELX_P9 AA9 ASP A 157 ? SER A 167 ? ASP A 157 SER A 167 1 ? 11 HELX_P HELX_P10 AB1 ASP B 22 ? LYS B 31 ? ASP B 22 LYS B 31 1 ? 10 HELX_P HELX_P11 AB2 GLY B 47 ? THR B 57 ? GLY B 47 THR B 57 1 ? 11 HELX_P HELX_P12 AB3 ASN B 59 ? GLY B 73 ? ASN B 59 GLY B 73 1 ? 15 HELX_P HELX_P13 AB4 ASN B 99 ? GLY B 103 ? ASN B 99 GLY B 103 5 ? 5 HELX_P HELX_P14 AB5 ASP B 105 ? GLN B 107 ? ASP B 105 GLN B 107 5 ? 3 HELX_P HELX_P15 AB6 LEU B 108 ? ASN B 115 ? LEU B 108 ASN B 115 1 ? 8 HELX_P HELX_P16 AB7 PHE B 116 ? HIS B 119 ? PHE B 116 HIS B 119 5 ? 4 HELX_P HELX_P17 AB8 ALA B 129 ? GLY B 133 ? ALA B 129 GLY B 133 5 ? 5 HELX_P HELX_P18 AB9 ASP B 135 ? VAL B 147 ? ASP B 135 VAL B 147 1 ? 13 HELX_P HELX_P19 AC1 ASP B 157 ? LEU B 169 ? ASP B 157 LEU B 169 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 10 ? LYS A 11 ? LEU A 10 LYS A 11 AA1 2 VAL A 16 ? ASN A 20 ? VAL A 16 ASN A 20 AA1 3 ASN A 150 ? VAL A 155 ? ASN A 150 VAL A 155 AA1 4 VAL A 121 ? ALA A 124 ? VAL A 121 ALA A 124 AA2 1 VAL A 34 ? ALA A 38 ? VAL A 34 ALA A 38 AA2 2 HIS A 91 ? VAL A 95 ? HIS A 91 VAL A 95 AA2 3 SER A 80 ? SER A 84 ? SER A 80 SER A 84 AA3 1 LEU B 10 ? LYS B 11 ? LEU B 10 LYS B 11 AA3 2 VAL B 16 ? ASN B 20 ? VAL B 16 ASN B 20 AA3 3 ASN B 150 ? VAL B 155 ? ASN B 150 VAL B 155 AA3 4 VAL B 121 ? ALA B 124 ? VAL B 121 ALA B 124 AA4 1 VAL B 34 ? ALA B 38 ? VAL B 34 ALA B 38 AA4 2 HIS B 91 ? VAL B 95 ? HIS B 91 VAL B 95 AA4 3 SER B 80 ? SER B 84 ? SER B 80 SER B 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 10 ? N LEU A 10 O ILE A 18 ? O ILE A 18 AA1 2 3 N TYR A 17 ? N TYR A 17 O LEU A 153 ? O LEU A 153 AA1 3 4 O TYR A 152 ? O TYR A 152 N LEU A 122 ? N LEU A 122 AA2 1 2 N ASN A 37 ? N ASN A 37 O VAL A 95 ? O VAL A 95 AA2 2 3 O CYS A 92 ? O CYS A 92 N LEU A 83 ? N LEU A 83 AA3 1 2 N LEU B 10 ? N LEU B 10 O ILE B 18 ? O ILE B 18 AA3 2 3 N TYR B 17 ? N TYR B 17 O LEU B 153 ? O LEU B 153 AA3 3 4 O TYR B 152 ? O TYR B 152 N ALA B 124 ? N ALA B 124 AA4 1 2 N ASN B 37 ? N ASN B 37 O LEU B 93 ? O LEU B 93 AA4 2 3 O HIS B 94 ? O HIS B 94 N CYS B 81 ? N CYS B 81 # _atom_sites.entry_id 7FRD _atom_sites.fract_transf_matrix[1][1] 0.011276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025367 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n B 1 1 SER 1 1 1 SER SER B . n B 1 2 MET 2 2 2 MET MET B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 TYR 17 17 17 TYR TYR B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 HIS 45 45 45 HIS HIS B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 ASN 58 58 58 ASN ASN B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 MET 61 61 61 MET MET B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 TYR 68 68 68 TYR TYR B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 ASN 72 72 72 ASN ASN B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 PRO 74 74 74 PRO PRO B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 CYS 81 81 81 CYS CYS B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 HIS 91 91 91 HIS HIS B . n B 1 92 CYS 92 92 92 CYS CYS B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 HIS 94 94 94 HIS HIS B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 PRO 98 98 98 PRO PRO B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 TYR 113 113 113 TYR TYR B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 PHE 116 116 116 PHE PHE B . n B 1 117 ASN 117 117 117 ASN ASN B . n B 1 118 GLN 118 118 118 GLN GLN B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 GLU 120 120 120 GLU GLU B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 PRO 125 125 125 PRO PRO B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 SER 128 128 128 SER SER B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 ILE 131 131 131 ILE ILE B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 GLY 133 133 133 GLY GLY B . n B 1 134 ALA 134 134 134 ALA ALA B . n B 1 135 ASP 135 135 135 ASP ASP B . n B 1 136 PRO 136 136 136 PRO PRO B . n B 1 137 ILE 137 137 137 ILE ILE B . n B 1 138 HIS 138 138 138 HIS HIS B . n B 1 139 SER 139 139 139 SER SER B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 VAL 142 142 142 VAL VAL B . n B 1 143 CYS 143 143 143 CYS CYS B . n B 1 144 VAL 144 144 144 VAL VAL B . n B 1 145 ASP 145 145 145 ASP ASP B . n B 1 146 THR 146 146 146 THR THR B . n B 1 147 VAL 147 147 147 VAL VAL B . n B 1 148 ARG 148 148 148 ARG ARG B . n B 1 149 THR 149 149 149 THR THR B . n B 1 150 ASN 150 150 150 ASN ASN B . n B 1 151 VAL 151 151 151 VAL VAL B . n B 1 152 TYR 152 152 152 TYR TYR B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 ALA 154 154 154 ALA ALA B . n B 1 155 VAL 155 155 155 VAL VAL B . n B 1 156 PHE 156 156 156 PHE PHE B . n B 1 157 ASP 157 157 157 ASP ASP B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 ASN 159 159 159 ASN ASN B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 TYR 161 161 161 TYR TYR B . n B 1 162 ASP 162 162 162 ASP ASP B . n B 1 163 LYS 163 163 163 LYS LYS B . n B 1 164 LEU 164 164 164 LEU LEU B . n B 1 165 VAL 165 165 165 VAL VAL B . n B 1 166 SER 166 166 166 SER SER B . n B 1 167 SER 167 167 167 SER SER B . n B 1 168 PHE 168 168 168 PHE PHE B . n B 1 169 LEU 169 169 169 LEU LEU B . n # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jaimefraser@gmail.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WY6 1 201 201 WY6 LAB A . D 3 HOH 1 301 212 HOH HOH A . D 3 HOH 2 302 151 HOH HOH A . D 3 HOH 3 303 66 HOH HOH A . D 3 HOH 4 304 219 HOH HOH A . D 3 HOH 5 305 359 HOH HOH A . D 3 HOH 6 306 309 HOH HOH A . D 3 HOH 7 307 92 HOH HOH A . D 3 HOH 8 308 390 HOH HOH A . D 3 HOH 9 309 188 HOH HOH A . D 3 HOH 10 310 164 HOH HOH A . D 3 HOH 11 311 262 HOH HOH A . D 3 HOH 12 312 320 HOH HOH A . D 3 HOH 13 313 17 HOH HOH A . D 3 HOH 14 314 77 HOH HOH A . D 3 HOH 15 315 7 HOH HOH A . D 3 HOH 16 316 86 HOH HOH A . D 3 HOH 17 317 82 HOH HOH A . D 3 HOH 18 318 13 HOH HOH A . D 3 HOH 19 319 184 HOH HOH A . D 3 HOH 20 320 85 HOH HOH A . D 3 HOH 21 321 227 HOH HOH A . D 3 HOH 22 322 367 HOH HOH A . D 3 HOH 23 323 109 HOH HOH A . D 3 HOH 24 324 81 HOH HOH A . D 3 HOH 25 325 37 HOH HOH A . D 3 HOH 26 326 45 HOH HOH A . D 3 HOH 27 327 199 HOH HOH A . D 3 HOH 28 328 7 HOH HOH A . D 3 HOH 29 329 53 HOH HOH A . D 3 HOH 30 330 289 HOH HOH A . D 3 HOH 31 331 284 HOH HOH A . D 3 HOH 32 332 208 HOH HOH A . D 3 HOH 33 333 152 HOH HOH A . D 3 HOH 34 334 30 HOH HOH A . D 3 HOH 35 335 9 HOH HOH A . D 3 HOH 36 336 55 HOH HOH A . D 3 HOH 37 337 243 HOH HOH A . D 3 HOH 38 338 137 HOH HOH A . D 3 HOH 39 339 8 HOH HOH A . D 3 HOH 40 340 173 HOH HOH A . D 3 HOH 41 341 198 HOH HOH A . D 3 HOH 42 342 247 HOH HOH A . D 3 HOH 43 343 204 HOH HOH A . D 3 HOH 44 344 54 HOH HOH A . D 3 HOH 45 345 314 HOH HOH A . D 3 HOH 46 346 145 HOH HOH A . D 3 HOH 47 347 261 HOH HOH A . D 3 HOH 48 348 121 HOH HOH A . D 3 HOH 49 349 286 HOH HOH A . D 3 HOH 50 350 128 HOH HOH A . D 3 HOH 51 351 33 HOH HOH A . D 3 HOH 52 352 273 HOH HOH A . D 3 HOH 53 353 251 HOH HOH A . D 3 HOH 54 354 302 HOH HOH A . D 3 HOH 55 355 178 HOH HOH A . D 3 HOH 56 356 8 HOH HOH A . D 3 HOH 57 357 148 HOH HOH A . D 3 HOH 58 358 29 HOH HOH A . D 3 HOH 59 359 362 HOH HOH A . D 3 HOH 60 360 75 HOH HOH A . D 3 HOH 61 361 1 HOH HOH A . D 3 HOH 62 362 189 HOH HOH A . D 3 HOH 63 363 5 HOH HOH A . D 3 HOH 64 364 142 HOH HOH A . D 3 HOH 65 365 135 HOH HOH A . D 3 HOH 66 366 168 HOH HOH A . D 3 HOH 67 367 126 HOH HOH A . D 3 HOH 68 368 388 HOH HOH A . D 3 HOH 69 369 357 HOH HOH A . D 3 HOH 70 370 51 HOH HOH A . D 3 HOH 71 371 12 HOH HOH A . D 3 HOH 72 372 372 HOH HOH A . D 3 HOH 73 373 206 HOH HOH A . D 3 HOH 74 374 245 HOH HOH A . D 3 HOH 75 375 87 HOH HOH A . D 3 HOH 76 376 194 HOH HOH A . D 3 HOH 77 377 344 HOH HOH A . D 3 HOH 78 378 25 HOH HOH A . D 3 HOH 79 379 6 HOH HOH A . D 3 HOH 80 380 5 HOH HOH A . D 3 HOH 81 381 296 HOH HOH A . D 3 HOH 82 382 177 HOH HOH A . D 3 HOH 83 383 277 HOH HOH A . D 3 HOH 84 384 141 HOH HOH A . D 3 HOH 85 385 49 HOH HOH A . D 3 HOH 86 386 46 HOH HOH A . D 3 HOH 87 387 16 HOH HOH A . D 3 HOH 88 388 32 HOH HOH A . D 3 HOH 89 389 62 HOH HOH A . D 3 HOH 90 390 24 HOH HOH A . D 3 HOH 91 391 41 HOH HOH A . D 3 HOH 92 392 79 HOH HOH A . D 3 HOH 93 393 5 HOH HOH A . D 3 HOH 94 394 56 HOH HOH A . D 3 HOH 95 395 341 HOH HOH A . D 3 HOH 96 396 233 HOH HOH A . D 3 HOH 97 397 328 HOH HOH A . D 3 HOH 98 398 61 HOH HOH A . D 3 HOH 99 399 196 HOH HOH A . D 3 HOH 100 400 319 HOH HOH A . D 3 HOH 101 401 43 HOH HOH A . D 3 HOH 102 402 221 HOH HOH A . D 3 HOH 103 403 285 HOH HOH A . D 3 HOH 104 404 96 HOH HOH A . D 3 HOH 105 405 98 HOH HOH A . D 3 HOH 106 406 146 HOH HOH A . D 3 HOH 107 407 347 HOH HOH A . D 3 HOH 108 408 144 HOH HOH A . D 3 HOH 109 409 44 HOH HOH A . D 3 HOH 110 410 4 HOH HOH A . D 3 HOH 111 411 338 HOH HOH A . D 3 HOH 112 412 58 HOH HOH A . D 3 HOH 113 413 8 HOH HOH A . D 3 HOH 114 414 259 HOH HOH A . D 3 HOH 115 415 21 HOH HOH A . D 3 HOH 116 416 176 HOH HOH A . D 3 HOH 117 417 379 HOH HOH A . D 3 HOH 118 418 182 HOH HOH A . D 3 HOH 119 419 94 HOH HOH A . D 3 HOH 120 420 241 HOH HOH A . D 3 HOH 121 421 128 HOH HOH A . D 3 HOH 122 422 55 HOH HOH A . D 3 HOH 123 423 67 HOH HOH A . D 3 HOH 124 424 52 HOH HOH A . D 3 HOH 125 425 170 HOH HOH A . D 3 HOH 126 426 90 HOH HOH A . D 3 HOH 127 427 315 HOH HOH A . D 3 HOH 128 428 14 HOH HOH A . D 3 HOH 129 429 166 HOH HOH A . D 3 HOH 130 430 3 HOH HOH A . D 3 HOH 131 431 50 HOH HOH A . D 3 HOH 132 432 127 HOH HOH A . D 3 HOH 133 433 38 HOH HOH A . D 3 HOH 134 434 317 HOH HOH A . D 3 HOH 135 435 235 HOH HOH A . D 3 HOH 136 436 351 HOH HOH A . D 3 HOH 137 437 108 HOH HOH A . D 3 HOH 138 438 97 HOH HOH A . D 3 HOH 139 439 368 HOH HOH A . D 3 HOH 140 440 78 HOH HOH A . D 3 HOH 141 441 112 HOH HOH A . D 3 HOH 142 442 153 HOH HOH A . D 3 HOH 143 443 32 HOH HOH A . D 3 HOH 144 444 107 HOH HOH A . D 3 HOH 145 445 95 HOH HOH A . D 3 HOH 146 446 232 HOH HOH A . D 3 HOH 147 447 4 HOH HOH A . D 3 HOH 148 448 312 HOH HOH A . D 3 HOH 149 449 270 HOH HOH A . D 3 HOH 150 450 10 HOH HOH A . D 3 HOH 151 451 385 HOH HOH A . D 3 HOH 152 452 10 HOH HOH A . D 3 HOH 153 453 181 HOH HOH A . D 3 HOH 154 454 308 HOH HOH A . D 3 HOH 155 455 74 HOH HOH A . D 3 HOH 156 456 2 HOH HOH A . D 3 HOH 157 457 343 HOH HOH A . D 3 HOH 158 458 110 HOH HOH A . D 3 HOH 159 459 225 HOH HOH A . D 3 HOH 160 460 143 HOH HOH A . D 3 HOH 161 461 639 HOH HOH A . D 3 HOH 162 462 610 HOH HOH A . D 3 HOH 163 463 62 HOH HOH A . D 3 HOH 164 464 382 HOH HOH A . D 3 HOH 165 465 185 HOH HOH A . D 3 HOH 166 466 331 HOH HOH A . D 3 HOH 167 467 396 HOH HOH A . D 3 HOH 168 468 258 HOH HOH A . D 3 HOH 169 469 244 HOH HOH A . D 3 HOH 170 470 122 HOH HOH A . D 3 HOH 171 471 297 HOH HOH A . D 3 HOH 172 472 69 HOH HOH A . D 3 HOH 173 473 159 HOH HOH A . D 3 HOH 174 474 279 HOH HOH A . D 3 HOH 175 475 215 HOH HOH A . D 3 HOH 176 476 234 HOH HOH A . D 3 HOH 177 477 292 HOH HOH A . D 3 HOH 178 478 175 HOH HOH A . D 3 HOH 179 479 614 HOH HOH A . D 3 HOH 180 480 346 HOH HOH A . D 3 HOH 181 481 330 HOH HOH A . D 3 HOH 182 482 322 HOH HOH A . D 3 HOH 183 483 119 HOH HOH A . D 3 HOH 184 484 221 HOH HOH A . D 3 HOH 185 485 381 HOH HOH A . D 3 HOH 186 486 276 HOH HOH A . D 3 HOH 187 487 294 HOH HOH A . D 3 HOH 188 488 174 HOH HOH A . D 3 HOH 189 489 374 HOH HOH A . D 3 HOH 190 490 266 HOH HOH A . D 3 HOH 191 491 375 HOH HOH A . D 3 HOH 192 492 11 HOH HOH A . D 3 HOH 193 493 250 HOH HOH A . D 3 HOH 194 494 364 HOH HOH A . D 3 HOH 195 495 583 HOH HOH A . D 3 HOH 196 496 311 HOH HOH A . D 3 HOH 197 497 606 HOH HOH A . D 3 HOH 198 498 167 HOH HOH A . D 3 HOH 199 499 386 HOH HOH A . D 3 HOH 200 500 222 HOH HOH A . D 3 HOH 201 501 339 HOH HOH A . D 3 HOH 202 502 340 HOH HOH A . D 3 HOH 203 503 287 HOH HOH A . D 3 HOH 204 504 172 HOH HOH A . D 3 HOH 205 505 336 HOH HOH A . D 3 HOH 206 506 337 HOH HOH A . D 3 HOH 207 507 299 HOH HOH A . D 3 HOH 208 508 321 HOH HOH A . D 3 HOH 209 509 511 HOH HOH A . D 3 HOH 210 510 1 HOH HOH A . D 3 HOH 211 511 256 HOH HOH A . D 3 HOH 212 512 180 HOH HOH A . D 3 HOH 213 513 236 HOH HOH A . D 3 HOH 214 514 313 HOH HOH A . D 3 HOH 215 515 271 HOH HOH A . D 3 HOH 216 516 316 HOH HOH A . D 3 HOH 217 517 323 HOH HOH A . D 3 HOH 218 518 326 HOH HOH A . D 3 HOH 219 519 637 HOH HOH A . D 3 HOH 220 520 592 HOH HOH A . D 3 HOH 221 521 255 HOH HOH A . D 3 HOH 222 522 203 HOH HOH A . D 3 HOH 223 523 325 HOH HOH A . D 3 HOH 224 524 12 HOH HOH A . D 3 HOH 225 525 601 HOH HOH A . D 3 HOH 226 526 612 HOH HOH A . D 3 HOH 227 527 617 HOH HOH A . D 3 HOH 228 528 390 HOH HOH A . E 3 HOH 1 201 132 HOH HOH B . E 3 HOH 2 202 163 HOH HOH B . E 3 HOH 3 203 387 HOH HOH B . E 3 HOH 4 204 133 HOH HOH B . E 3 HOH 5 205 195 HOH HOH B . E 3 HOH 6 206 34 HOH HOH B . E 3 HOH 7 207 392 HOH HOH B . E 3 HOH 8 208 231 HOH HOH B . E 3 HOH 9 209 205 HOH HOH B . E 3 HOH 10 210 216 HOH HOH B . E 3 HOH 11 211 354 HOH HOH B . E 3 HOH 12 212 358 HOH HOH B . E 3 HOH 13 213 106 HOH HOH B . E 3 HOH 14 214 334 HOH HOH B . E 3 HOH 15 215 265 HOH HOH B . E 3 HOH 16 216 214 HOH HOH B . E 3 HOH 17 217 290 HOH HOH B . E 3 HOH 18 218 376 HOH HOH B . E 3 HOH 19 219 264 HOH HOH B . E 3 HOH 20 220 139 HOH HOH B . E 3 HOH 21 221 103 HOH HOH B . E 3 HOH 22 222 395 HOH HOH B . E 3 HOH 23 223 124 HOH HOH B . E 3 HOH 24 224 305 HOH HOH B . E 3 HOH 25 225 201 HOH HOH B . E 3 HOH 26 226 59 HOH HOH B . E 3 HOH 27 227 246 HOH HOH B . E 3 HOH 28 228 209 HOH HOH B . E 3 HOH 29 229 332 HOH HOH B . E 3 HOH 30 230 238 HOH HOH B . E 3 HOH 31 231 102 HOH HOH B . E 3 HOH 32 232 373 HOH HOH B . E 3 HOH 33 233 31 HOH HOH B . E 3 HOH 34 234 282 HOH HOH B . E 3 HOH 35 235 147 HOH HOH B . E 3 HOH 36 236 65 HOH HOH B . E 3 HOH 37 237 70 HOH HOH B . E 3 HOH 38 238 154 HOH HOH B . E 3 HOH 39 239 130 HOH HOH B . E 3 HOH 40 240 371 HOH HOH B . E 3 HOH 41 241 210 HOH HOH B . E 3 HOH 42 242 275 HOH HOH B . E 3 HOH 43 243 35 HOH HOH B . E 3 HOH 44 244 260 HOH HOH B . E 3 HOH 45 245 111 HOH HOH B . E 3 HOH 46 246 100 HOH HOH B . E 3 HOH 47 247 193 HOH HOH B . E 3 HOH 48 248 115 HOH HOH B . E 3 HOH 49 249 340 HOH HOH B . E 3 HOH 50 250 131 HOH HOH B . E 3 HOH 51 251 63 HOH HOH B . E 3 HOH 52 252 162 HOH HOH B . E 3 HOH 53 253 27 HOH HOH B . E 3 HOH 54 254 19 HOH HOH B . E 3 HOH 55 255 393 HOH HOH B . E 3 HOH 56 256 196 HOH HOH B . E 3 HOH 57 257 140 HOH HOH B . E 3 HOH 58 258 3 HOH HOH B . E 3 HOH 59 259 136 HOH HOH B . E 3 HOH 60 260 64 HOH HOH B . E 3 HOH 61 261 161 HOH HOH B . E 3 HOH 62 262 2 HOH HOH B . E 3 HOH 63 263 156 HOH HOH B . E 3 HOH 64 264 164 HOH HOH B . E 3 HOH 65 265 44 HOH HOH B . E 3 HOH 66 266 15 HOH HOH B . E 3 HOH 67 267 125 HOH HOH B . E 3 HOH 68 268 47 HOH HOH B . E 3 HOH 69 269 6 HOH HOH B . E 3 HOH 70 270 84 HOH HOH B . E 3 HOH 71 271 304 HOH HOH B . E 3 HOH 72 272 11 HOH HOH B . E 3 HOH 73 273 191 HOH HOH B . E 3 HOH 74 274 23 HOH HOH B . E 3 HOH 75 275 200 HOH HOH B . E 3 HOH 76 276 60 HOH HOH B . E 3 HOH 77 277 218 HOH HOH B . E 3 HOH 78 278 73 HOH HOH B . E 3 HOH 79 279 57 HOH HOH B . E 3 HOH 80 280 110 HOH HOH B . E 3 HOH 81 281 91 HOH HOH B . E 3 HOH 82 282 229 HOH HOH B . E 3 HOH 83 283 9 HOH HOH B . E 3 HOH 84 284 105 HOH HOH B . E 3 HOH 85 285 169 HOH HOH B . E 3 HOH 86 286 248 HOH HOH B . E 3 HOH 87 287 239 HOH HOH B . E 3 HOH 88 288 336 HOH HOH B . E 3 HOH 89 289 280 HOH HOH B . E 3 HOH 90 290 36 HOH HOH B . E 3 HOH 91 291 211 HOH HOH B . E 3 HOH 92 292 10 HOH HOH B . E 3 HOH 93 293 104 HOH HOH B . E 3 HOH 94 294 158 HOH HOH B . E 3 HOH 95 295 113 HOH HOH B . E 3 HOH 96 296 101 HOH HOH B . E 3 HOH 97 297 171 HOH HOH B . E 3 HOH 98 298 13 HOH HOH B . E 3 HOH 99 299 116 HOH HOH B . E 3 HOH 100 300 293 HOH HOH B . E 3 HOH 101 301 190 HOH HOH B . E 3 HOH 102 302 298 HOH HOH B . E 3 HOH 103 303 72 HOH HOH B . E 3 HOH 104 304 228 HOH HOH B . E 3 HOH 105 305 165 HOH HOH B . E 3 HOH 106 306 26 HOH HOH B . E 3 HOH 107 307 149 HOH HOH B . E 3 HOH 108 308 71 HOH HOH B . E 3 HOH 109 309 361 HOH HOH B . E 3 HOH 110 310 223 HOH HOH B . E 3 HOH 111 311 257 HOH HOH B . E 3 HOH 112 312 123 HOH HOH B . E 3 HOH 113 313 76 HOH HOH B . E 3 HOH 114 314 155 HOH HOH B . E 3 HOH 115 315 89 HOH HOH B . E 3 HOH 116 316 117 HOH HOH B . E 3 HOH 117 317 20 HOH HOH B . E 3 HOH 118 318 83 HOH HOH B . E 3 HOH 119 319 118 HOH HOH B . E 3 HOH 120 320 187 HOH HOH B . E 3 HOH 121 321 120 HOH HOH B . E 3 HOH 122 322 18 HOH HOH B . E 3 HOH 123 323 40 HOH HOH B . E 3 HOH 124 324 53 HOH HOH B . E 3 HOH 125 325 39 HOH HOH B . E 3 HOH 126 326 327 HOH HOH B . E 3 HOH 127 327 237 HOH HOH B . E 3 HOH 128 328 217 HOH HOH B . E 3 HOH 129 329 22 HOH HOH B . E 3 HOH 130 330 230 HOH HOH B . E 3 HOH 131 331 150 HOH HOH B . E 3 HOH 132 332 48 HOH HOH B . E 3 HOH 133 333 80 HOH HOH B . E 3 HOH 134 334 186 HOH HOH B . E 3 HOH 135 335 242 HOH HOH B . E 3 HOH 136 336 68 HOH HOH B . E 3 HOH 137 337 42 HOH HOH B . E 3 HOH 138 338 303 HOH HOH B . E 3 HOH 139 339 226 HOH HOH B . E 3 HOH 140 340 369 HOH HOH B . E 3 HOH 141 341 88 HOH HOH B . E 3 HOH 142 342 353 HOH HOH B . E 3 HOH 143 343 28 HOH HOH B . E 3 HOH 144 344 272 HOH HOH B . E 3 HOH 145 345 93 HOH HOH B . E 3 HOH 146 346 295 HOH HOH B . E 3 HOH 147 347 394 HOH HOH B . E 3 HOH 148 348 129 HOH HOH B . E 3 HOH 149 349 329 HOH HOH B . E 3 HOH 150 350 307 HOH HOH B . E 3 HOH 151 351 283 HOH HOH B . E 3 HOH 152 352 157 HOH HOH B . E 3 HOH 153 353 274 HOH HOH B . E 3 HOH 154 354 349 HOH HOH B . E 3 HOH 155 355 363 HOH HOH B . E 3 HOH 156 356 138 HOH HOH B . E 3 HOH 157 357 263 HOH HOH B . E 3 HOH 158 358 300 HOH HOH B . E 3 HOH 159 359 268 HOH HOH B . E 3 HOH 160 360 391 HOH HOH B . E 3 HOH 161 361 288 HOH HOH B . E 3 HOH 162 362 179 HOH HOH B . E 3 HOH 163 363 350 HOH HOH B . E 3 HOH 164 364 318 HOH HOH B . E 3 HOH 165 365 380 HOH HOH B . E 3 HOH 166 366 254 HOH HOH B . E 3 HOH 167 367 333 HOH HOH B . E 3 HOH 168 368 202 HOH HOH B . E 3 HOH 169 369 253 HOH HOH B . E 3 HOH 170 370 269 HOH HOH B . E 3 HOH 171 371 192 HOH HOH B . E 3 HOH 172 372 384 HOH HOH B . E 3 HOH 173 373 240 HOH HOH B . E 3 HOH 174 374 348 HOH HOH B . E 3 HOH 175 375 252 HOH HOH B . E 3 HOH 176 376 301 HOH HOH B . E 3 HOH 177 377 345 HOH HOH B . E 3 HOH 178 378 389 HOH HOH B . E 3 HOH 179 379 377 HOH HOH B . E 3 HOH 180 380 183 HOH HOH B . E 3 HOH 181 381 342 HOH HOH B . E 3 HOH 182 382 326 HOH HOH B . E 3 HOH 183 383 335 HOH HOH B . E 3 HOH 184 384 356 HOH HOH B . E 3 HOH 185 385 370 HOH HOH B . E 3 HOH 186 386 134 HOH HOH B . E 3 HOH 187 387 249 HOH HOH B . E 3 HOH 188 388 281 HOH HOH B . E 3 HOH 189 389 383 HOH HOH B . E 3 HOH 190 390 360 HOH HOH B . E 3 HOH 191 391 114 HOH HOH B . E 3 HOH 192 392 310 HOH HOH B . E 3 HOH 193 393 355 HOH HOH B . E 3 HOH 194 394 378 HOH HOH B . E 3 HOH 195 395 160 HOH HOH B . E 3 HOH 196 396 278 HOH HOH B . E 3 HOH 197 397 99 HOH HOH B . E 3 HOH 198 398 352 HOH HOH B . E 3 HOH 199 399 207 HOH HOH B . E 3 HOH 200 400 197 HOH HOH B . E 3 HOH 201 401 224 HOH HOH B . E 3 HOH 202 402 220 HOH HOH B . E 3 HOH 203 403 291 HOH HOH B . E 3 HOH 204 404 213 HOH HOH B . E 3 HOH 205 405 267 HOH HOH B . E 3 HOH 206 406 324 HOH HOH B . E 3 HOH 207 407 306 HOH HOH B . E 3 HOH 208 408 365 HOH HOH B . E 3 HOH 209 409 366 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D 2 1 B,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-11-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.20.1_4487 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 3 PDB_EXTRACT 3.22 'July. 13, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS 'Jan 10, 2022' 'Jan. 10, 2022' program 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de 'data reduction' http://xds.mpimf-heidelberg.mpg.de ? ? 5 PHASER 2.8.3 'May 17, 2020' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing https://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software ? ? # _pdbx_entry_details.entry_id 7FRD _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ3 A LYS 31 ? A O A HOH 302 ? ? 1.42 2 1 HZ2 B LYS 44 ? ? O B HOH 203 ? ? 1.47 3 1 HZ3 A LYS 28 ? B O A HOH 304 ? ? 1.54 4 1 H A ASP 22 ? A O A HOH 307 ? ? 1.57 5 1 O B HOH 361 ? ? O B HOH 398 ? ? 1.87 6 1 O A HOH 316 ? ? O B HOH 215 ? ? 1.88 7 1 O B HOH 223 ? ? O B HOH 361 ? ? 1.93 8 1 O B LEU 169 ? B O B HOH 201 ? ? 1.93 9 1 O B LEU 169 ? A O B HOH 201 ? ? 1.99 10 1 OH B TYR 42 ? ? O B HOH 202 ? ? 2.02 11 1 OE1 A GLU 25 ? A O A HOH 301 ? ? 2.04 12 1 O A HOH 407 ? ? O A HOH 501 ? ? 2.05 13 1 NZ B LYS 44 ? ? O B HOH 203 ? ? 2.08 14 1 O A HOH 344 ? ? O B HOH 302 ? ? 2.14 15 1 O A HOH 395 ? ? O A HOH 485 ? ? 2.15 16 1 NZ A LYS 31 ? A O A HOH 302 ? ? 2.16 17 1 O A HOH 478 ? ? O A HOH 487 ? ? 2.17 18 1 O A HOH 368 ? ? O A HOH 372 ? ? 2.18 19 1 OE2 A GLU 26 ? A O A HOH 303 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 464 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 408 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_455 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 86 ? ? 55.68 -137.77 2 1 HIS A 86 ? ? 55.68 -131.06 3 1 SER A 128 ? B 69.59 -5.57 4 1 TYR A 161 ? ? -50.43 -73.38 5 1 HIS B 86 ? ? 57.10 -128.23 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id TYR _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 161 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 10.24 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 528 ? 5.92 . 2 1 O ? B HOH 409 ? 6.44 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A MET 2 ? A MET 2 # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 2031205 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 NSP3 macrodomain ligand screen' _pdbx_deposit_group.group_description 'SARS-CoV-2 NSP3 macrodomain in complex with ligands identified by X-ray diffraction using ALS 8.3.1, SSRL 12-1 and SSRL 12-2' _pdbx_deposit_group.group_type 'changed state' _pdbx_deposit_group.group_id G_1002254 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id WY6 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id WY6 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-phenyl-N-{(2S)-1-[(7H-purin-6-yl)amino]butan-2-yl}propanamide' WY6 3 water HOH #