HEADER HYDROLASE, ISOMERASE 04-JAN-23 7FSE TITLE CRYSTAL STRUCTURE OF T. MARITIMA REVERSE GYRASE WITH A MINIMAL LATCH COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE GYRASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.12,5.6.2.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 GENE: RGY, TOPR, TM_0173; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TOPOISOMERASE, DNA SUPERCOILING, ARCHAEA, HELICASE, HYDROLASE, KEYWDS 2 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.RASCHE,D.KUMMEL,M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 4 22-MAY-24 7FSE 1 REMARK REVDAT 3 12-JUL-23 7FSE 1 JRNL REVDAT 2 31-MAY-23 7FSE 1 JRNL REVDAT 1 10-MAY-23 7FSE 0 JRNL AUTH V.P.MHAINDARKAR,R.RASCHE,D.KUMMEL,M.G.RUDOLPH,D.KLOSTERMEIER JRNL TITL STRUCTURE OF REVERSE GYRASE WITH A MINIMAL LATCH THAT JRNL TITL 2 SUPPORTS ATP-DEPENDENT POSITIVE SUPERCOILING WITHOUT JRNL TITL 3 SPECIFIC INTERACTIONS WITH THE TOPOISOMERASE DOMAIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 79 498 2023 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 37204816 JRNL DOI 10.1107/S2059798323002565 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.2 REMARK 3 NUMBER OF REFLECTIONS : 24987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.6200 - 6.0200 1.00 3648 183 0.1778 0.2201 REMARK 3 2 6.0200 - 4.7800 1.00 3414 181 0.2056 0.2630 REMARK 3 3 4.7800 - 4.1700 1.00 3363 194 0.1827 0.2216 REMARK 3 4 4.1700 - 3.7900 0.98 3314 157 0.2172 0.2879 REMARK 3 5 3.7900 - 3.5200 0.93 3127 166 0.2383 0.2919 REMARK 3 6 3.5200 - 3.3100 0.88 2923 157 0.2707 0.3431 REMARK 3 7 3.3100 - 3.1500 0.73 2405 115 0.2991 0.3750 REMARK 3 8 3.1500 - 3.0100 0.37 1211 60 0.3479 0.3692 REMARK 3 9 3.0100 - 2.8900 0.11 351 18 0.3464 0.3679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 2 THROUGH 90 ) OR (RESID REMARK 3 1101)) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1872 65.9186 9.2743 REMARK 3 T TENSOR REMARK 3 T11: 0.6418 T22: 0.4651 REMARK 3 T33: 0.5234 T12: 0.0701 REMARK 3 T13: 0.1802 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 1.0097 L22: 0.6427 REMARK 3 L33: 0.5701 L12: 0.3596 REMARK 3 L13: -0.0521 L23: -0.3913 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.2227 S13: -0.0497 REMARK 3 S21: -0.1382 S22: -0.1869 S23: -0.1380 REMARK 3 S31: -0.0095 S32: 0.1343 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0052 43.3731 16.2425 REMARK 3 T TENSOR REMARK 3 T11: 0.7899 T22: 1.2891 REMARK 3 T33: 1.1383 T12: 0.1897 REMARK 3 T13: 0.1657 T23: 0.3849 REMARK 3 L TENSOR REMARK 3 L11: 1.7780 L22: 1.0111 REMARK 3 L33: 0.6591 L12: -0.4870 REMARK 3 L13: 0.5161 L23: -0.4824 REMARK 3 S TENSOR REMARK 3 S11: -0.1468 S12: -0.7518 S13: -0.7857 REMARK 3 S21: 0.2902 S22: -0.5022 S23: -0.5870 REMARK 3 S31: 0.2895 S32: 0.9049 S33: -0.0045 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 253 THROUGH 456 ) OR (RESID REMARK 3 1103)) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7342 17.3905 13.6105 REMARK 3 T TENSOR REMARK 3 T11: 0.5027 T22: 0.4259 REMARK 3 T33: 0.4174 T12: 0.0611 REMARK 3 T13: 0.0504 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.6526 L22: 3.6798 REMARK 3 L33: 2.0298 L12: -0.0997 REMARK 3 L13: -0.0190 L23: 0.8950 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.1214 S13: -0.0780 REMARK 3 S21: 0.1001 S22: 0.0548 S23: -0.1460 REMARK 3 S31: 0.0814 S32: 0.2236 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 457 THROUGH 1041 ) OR (RESID REMARK 3 1102)) REMARK 3 ORIGIN FOR THE GROUP (A): -36.9956 48.7561 29.1415 REMARK 3 T TENSOR REMARK 3 T11: 0.4304 T22: 0.4730 REMARK 3 T33: 0.3769 T12: 0.0820 REMARK 3 T13: -0.0135 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 0.9581 L22: 1.3608 REMARK 3 L33: 0.9208 L12: -0.0446 REMARK 3 L13: -0.1070 L23: -0.0745 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: -0.0610 S13: -0.0387 REMARK 3 S21: 0.0742 S22: -0.0054 S23: 0.2175 REMARK 3 S31: -0.0620 S32: -0.2640 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7FSE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1001405287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : EIGER 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 88.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.29800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.96 REMARK 200 R MERGE FOR SHELL (I) : 4.91700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DDU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 54 MICROM PROTEIN IN 50MM TRIS/HCL, REMARK 280 PH7.5, 500MM NACL, 10MM MGCL2, 100 MICROM ZNCL2, 2MM BME MIXED 1: REMARK 280 1 WITH 20% PEG3350 0.2 M KNO3, TOTAL VOLUME 200NL, PH 6.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 161.65600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.91600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.91600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.82800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.91600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.91600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 242.48400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.91600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.91600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.82800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.91600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.91600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 242.48400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 161.65600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 1042 REMARK 465 GLY A 1043 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O TYR A 365 NH1 ARG A 986 5445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 28 -175.98 -69.80 REMARK 500 SER A 157 35.67 -98.17 REMARK 500 ALA A 260 45.13 70.19 REMARK 500 ARG A 309 -64.84 69.51 REMARK 500 GLU A 342 66.89 -105.35 REMARK 500 LEU A 374 80.19 -151.92 REMARK 500 SER A 392 -173.59 55.54 REMARK 500 LEU A 393 58.59 -92.64 REMARK 500 GLU A 395 9.60 83.01 REMARK 500 ARG A 508 -109.13 52.83 REMARK 500 TRP A 824 -128.54 58.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 12P A 1100 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 103.0 REMARK 620 3 CYS A 29 SG 109.1 114.0 REMARK 620 4 CYS A 32 SG 114.3 108.4 108.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 NE2 REMARK 620 2 GLU A 303 OE2 71.3 REMARK 620 3 GLU A 306 OE1 72.4 2.4 REMARK 620 4 HOH A1217 O 71.7 2.5 0.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 560 SG REMARK 620 2 CYS A 563 SG 111.9 REMARK 620 3 CYS A 574 SG 111.2 106.2 REMARK 620 4 CYS A 577 SG 105.7 109.9 112.1 REMARK 620 N 1 2 3 DBREF 7FSE A 1 394 UNP O51934 RGYR_THEMA 1 394 DBREF 7FSE A 395 1043 UNP O51934 RGYR_THEMA 456 1104 SEQRES 1 A 1043 MET ALA VAL ASN SER LYS TYR HIS HIS SER CYS ILE ASN SEQRES 2 A 1043 CYS GLY GLY LEU ASN THR ASP GLU ARG ASN GLU ARG GLY SEQRES 3 A 1043 LEU PRO CYS GLU VAL CYS LEU PRO GLU ASP SER PRO SER SEQRES 4 A 1043 ASP ILE TYR ARG ALA LEU LEU GLU ARG LYS THR LEU LYS SEQRES 5 A 1043 GLU TYR ARG PHE TYR HIS GLU PHE TRP ASN GLU TYR GLU SEQRES 6 A 1043 ASP PHE ARG SER PHE PHE LYS LYS LYS PHE GLY LYS ASP SEQRES 7 A 1043 LEU THR GLY TYR GLN ARG LEU TRP ALA LYS ARG ILE VAL SEQRES 8 A 1043 GLN GLY LYS SER PHE THR MET VAL ALA PRO THR GLY VAL SEQRES 9 A 1043 GLY LYS THR THR PHE GLY MET MET THR ALA LEU TRP LEU SEQRES 10 A 1043 ALA ARG LYS GLY LYS LYS SER ALA LEU VAL PHE PRO THR SEQRES 11 A 1043 VAL THR LEU VAL LYS GLN THR LEU GLU ARG LEU GLN LYS SEQRES 12 A 1043 LEU ALA ASP GLU LYS VAL LYS ILE PHE GLY PHE TYR SER SEQRES 13 A 1043 SER MET LYS LYS GLU GLU LYS GLU LYS PHE GLU LYS SER SEQRES 14 A 1043 PHE GLU GLU ASP ASP TYR HIS ILE LEU VAL PHE SER THR SEQRES 15 A 1043 GLN PHE VAL SER LYS ASN ARG GLU LYS LEU SER GLN LYS SEQRES 16 A 1043 ARG PHE ASP PHE VAL PHE VAL ASP ASP VAL ASP ALA VAL SEQRES 17 A 1043 LEU LYS ALA SER ARG ASN ILE ASP THR LEU LEU MET MET SEQRES 18 A 1043 VAL GLY ILE PRO GLU GLU ILE ILE ARG LYS ALA PHE SER SEQRES 19 A 1043 THR ILE LYS GLN GLY LYS ILE TYR GLU ARG PRO LYS ASN SEQRES 20 A 1043 LEU LYS PRO GLY ILE LEU VAL VAL SER SER ALA THR ALA SEQRES 21 A 1043 LYS PRO ARG GLY ILE ARG PRO LEU LEU PHE ARG ASP LEU SEQRES 22 A 1043 LEU ASN PHE THR VAL GLY ARG LEU VAL SER VAL ALA ARG SEQRES 23 A 1043 ASN ILE THR HIS VAL ARG ILE SER SER ARG SER LYS GLU SEQRES 24 A 1043 LYS LEU VAL GLU LEU LEU GLU ILE PHE ARG ASP GLY ILE SEQRES 25 A 1043 LEU ILE PHE ALA GLN THR GLU GLU GLU GLY LYS GLU LEU SEQRES 26 A 1043 TYR GLU TYR LEU LYS ARG PHE LYS PHE ASN VAL GLY GLU SEQRES 27 A 1043 THR TRP SER GLU PHE GLU LYS ASN PHE GLU ASP PHE LYS SEQRES 28 A 1043 VAL GLY LYS ILE ASN ILE LEU ILE GLY VAL GLN ALA TYR SEQRES 29 A 1043 TYR GLY LYS LEU THR ARG GLY VAL ASP LEU PRO GLU ARG SEQRES 30 A 1043 ILE LYS TYR VAL ILE PHE TRP GLY THR PRO SER MET ARG SEQRES 31 A 1043 PHE SER LEU GLU GLU LEU ILE ILE PRO ASP VAL TYR THR SEQRES 32 A 1043 TYR ILE GLN ALA SER GLY ARG SER SER ARG ILE LEU ASN SEQRES 33 A 1043 GLY VAL LEU VAL LYS GLY VAL SER VAL ILE PHE GLU GLU SEQRES 34 A 1043 ASP GLU GLU ILE PHE GLU SER LEU LYS THR ARG LEU LEU SEQRES 35 A 1043 LEU ILE ALA GLU GLU GLU ILE ILE GLU GLU ALA GLU ALA SEQRES 36 A 1043 ASN TRP LYS GLU LEU VAL HIS GLU VAL GLU GLU SER ARG SEQRES 37 A 1043 ARG ARG SER GLU ARG GLU LEU THR ASP THR SER ARG SER SEQRES 38 A 1043 LEU LEU ILE ILE VAL GLU SER PRO THR LYS ALA GLU THR SEQRES 39 A 1043 LEU SER ARG PHE LEU GLY ARG ALA SER SER ARG LYS GLU SEQRES 40 A 1043 ARG ASN ILE ILE VAL HIS GLU ALA VAL THR GLY GLU GLY SEQRES 41 A 1043 VAL ILE LEU PHE THR ALA THR ARG GLY HIS VAL TYR ASP SEQRES 42 A 1043 LEU VAL THR LYS GLY GLY ILE HIS GLY VAL GLU GLU GLU SEQRES 43 A 1043 ASN GLY LYS PHE VAL PRO VAL TYR ASN SER LEU LYS ARG SEQRES 44 A 1043 CYS ARG ASP CYS GLY TYR GLN PHE THR GLU ASP ARG ASP SEQRES 45 A 1043 GLU CYS PRO VAL CYS SER SER LYS ASN ILE ASP ASP LYS SEQRES 46 A 1043 THR GLU THR LEU ARG ALA LEU ARG GLU ILE SER LEU GLU SEQRES 47 A 1043 ALA ASP GLU ILE LEU VAL ALA THR ASP PRO ASP VAL GLU SEQRES 48 A 1043 GLY GLU LYS ILE SER TRP ASP VAL THR GLN TYR LEU LEU SEQRES 49 A 1043 PRO SER THR ARG SER LEU ARG ARG ILE GLU MET HIS GLU SEQRES 50 A 1043 ILE THR ARG TYR GLY PHE LYS LYS ALA ARG GLU SER VAL SEQRES 51 A 1043 ARG PHE VAL ASP PHE ASN LEU VAL LYS ALA GLN ILE VAL SEQRES 52 A 1043 ARG ARG VAL GLN ASP ARG TRP ILE GLY PHE GLU LEU SER SEQRES 53 A 1043 GLY LYS LEU GLN LYS ARG PHE GLY ARG SER ASN LEU SER SEQRES 54 A 1043 ALA GLY ARG VAL GLN SER THR VAL LEU GLY TRP ILE VAL SEQRES 55 A 1043 GLU ARG GLU GLU GLU TYR LYS LYS SER GLU LYS ASP PHE SEQRES 56 A 1043 THR LEU LEU VAL LEU GLU ASN GLY VAL ASN LEU GLU VAL SEQRES 57 A 1043 GLU GLY LYS ILE ALA ASP ASP VAL VAL THR VAL VAL GLU SEQRES 58 A 1043 LEU GLN GLU ALA GLU GLU GLU LYS ASN PRO LEU PRO PRO SEQRES 59 A 1043 TYR THR THR SER SER ALA LEU SER GLU ILE SER GLN LYS SEQRES 60 A 1043 LEU ARG LEU GLY VAL GLN GLU VAL MET ASP ILE LEU GLN SEQRES 61 A 1043 ASP LEU PHE GLU LYS GLY PHE ILE THR TYR HIS ARG THR SEQRES 62 A 1043 ASP SER THR ARG ILE SER LEU GLU GLY GLN ASN VAL ALA SEQRES 63 A 1043 ARG THR TYR LEU ARG LYS ILE GLY LYS GLU ASP ILE PHE SEQRES 64 A 1043 MET GLY ARG SER TRP SER THR GLU GLY ALA HIS GLU ALA SEQRES 65 A 1043 ILE ARG PRO VAL LYS PRO ILE ASP ALA ARG GLU LEU GLU SEQRES 66 A 1043 GLU MET ILE GLU GLU GLY LEU ILE ALA ASP LEU THR LYS SEQRES 67 A 1043 LYS HIS LEU ARG VAL TYR GLU LEU ILE PHE ASN ARG PHE SEQRES 68 A 1043 LEU ALA SER GLN SER ALA ALA VAL LYS VAL LYS LYS GLN SEQRES 69 A 1043 ILE VAL THR VAL ASP VAL ASP GLY LYS ARG MET GLY ILE SEQRES 70 A 1043 GLU GLN ILE VAL GLU ILE LEU ARG ASP GLY TRP ASN LEU SEQRES 71 A 1043 PHE VAL PRO LEU THR VAL SER PRO ARG PHE GLU HIS ARG SEQRES 72 A 1043 THR TYR LYS ILE LYS GLU LYS LYS PHE TYR LYS LYS HIS SEQRES 73 A 1043 THR VAL PRO LEU PHE THR GLN ALA SER ILE VAL GLU GLU SEQRES 74 A 1043 MET LYS LYS ARG GLY ILE GLY ARG PRO SER THR TYR ALA SEQRES 75 A 1043 LYS ILE VAL GLU VAL LEU PHE ARG ARG GLY TYR VAL TYR SEQRES 76 A 1043 GLU ASP LYS TYR LYS ARG VAL ARG PRO THR ARG PHE GLY SEQRES 77 A 1043 VAL MET VAL TYR SER TYR LEU LYS GLU ARG TYR GLU LYS SEQRES 78 A 1043 TYR VAL THR GLU GLU THR THR ARG ARG LEU GLU GLU ILE SEQRES 79 A 1043 MET ASP LYS VAL GLU ARG GLY GLU GLU ASP TYR GLN ALA SEQRES 80 A 1043 THR LEU ARG LEU LEU TYR GLU GLU ILE LYS SER LEU MET SEQRES 81 A 1043 GLU GLU GLY HET 12P A1100 19 HET ZN A1101 1 HET ZN A1102 1 HET ZN A1103 1 HET CL A1104 1 HETNAM 12P DODECAETHYLENE GLYCOL HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN 12P POLYETHYLENE GLYCOL PEG400 FORMUL 2 12P C24 H50 O13 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 HOH *17(H2 O) HELIX 1 AA1 ASP A 20 GLY A 26 1 7 HELIX 2 AA2 ASP A 40 ARG A 48 1 9 HELIX 3 AA3 GLU A 53 GLY A 76 1 24 HELIX 4 AA4 THR A 80 VAL A 91 1 12 HELIX 5 AA5 VAL A 104 LYS A 120 1 17 HELIX 6 AA6 THR A 130 ALA A 145 1 16 HELIX 7 AA7 LYS A 159 GLU A 172 1 14 HELIX 8 AA8 THR A 182 ASN A 188 1 7 HELIX 9 AA9 ASN A 188 GLN A 194 1 7 HELIX 10 AB1 VAL A 205 LYS A 210 1 6 HELIX 11 AB2 ALA A 211 VAL A 222 1 12 HELIX 12 AB3 PRO A 225 GLY A 239 1 15 HELIX 13 AB4 PRO A 267 LEU A 274 1 8 HELIX 14 AB5 SER A 297 ARG A 309 1 13 HELIX 15 AB6 THR A 318 PHE A 332 1 15 HELIX 16 AB7 GLU A 342 GLY A 353 1 12 HELIX 17 AB8 ASP A 400 ARG A 410 1 11 HELIX 18 AB9 ASP A 430 GLU A 446 1 17 HELIX 19 AC1 ALA A 453 ALA A 455 5 3 HELIX 20 AC2 ASN A 456 ARG A 473 1 18 HELIX 21 AC3 SER A 488 GLY A 500 1 13 HELIX 22 AC4 LYS A 585 ALA A 599 1 15 HELIX 23 AC5 ASP A 609 LEU A 624 1 16 HELIX 24 AC6 THR A 639 SER A 649 1 11 HELIX 25 AC7 ASP A 654 GLY A 684 1 31 HELIX 26 AC8 GLY A 691 SER A 711 1 21 HELIX 27 AC9 THR A 756 ARG A 769 1 14 HELIX 28 AD1 GLY A 771 LYS A 785 1 15 HELIX 29 AD2 SER A 799 ILE A 813 1 15 HELIX 30 AD3 LYS A 815 PHE A 819 5 5 HELIX 31 AD4 ASP A 840 GLU A 850 1 11 HELIX 32 AD5 THR A 857 GLN A 875 1 19 HELIX 33 AD6 GLY A 907 PHE A 911 5 5 HELIX 34 AD7 THR A 942 ARG A 953 1 12 HELIX 35 AD8 THR A 960 ARG A 971 1 12 HELIX 36 AD9 THR A 985 TYR A 999 1 15 HELIX 37 AE1 THR A 1004 ARG A 1020 1 17 HELIX 38 AE2 ASP A 1024 GLU A 1041 1 18 SHEET 1 AA1 4 ASN A 18 THR A 19 0 SHEET 2 AA1 4 LYS A 6 TYR A 7 -1 N TYR A 7 O ASN A 18 SHEET 3 AA1 4 LYS A 549 SER A 556 1 O TYR A 554 N LYS A 6 SHEET 4 AA1 4 TYR A 532 LEU A 534 -1 N ASP A 533 O ASN A 555 SHEET 1 AA2 4 ASN A 18 THR A 19 0 SHEET 2 AA2 4 LYS A 6 TYR A 7 -1 N TYR A 7 O ASN A 18 SHEET 3 AA2 4 LYS A 549 SER A 556 1 O TYR A 554 N LYS A 6 SHEET 4 AA2 4 VAL A 543 GLU A 546 -1 N GLU A 546 O LYS A 549 SHEET 1 AA3 6 PHE A 96 THR A 97 0 SHEET 2 AA3 6 LEU A 253 SER A 257 1 O VAL A 255 N PHE A 96 SHEET 3 AA3 6 PHE A 199 ASP A 204 1 N VAL A 202 O VAL A 254 SHEET 4 AA3 6 SER A 124 PHE A 128 1 N VAL A 127 O PHE A 201 SHEET 5 AA3 6 ILE A 177 SER A 181 1 O LEU A 178 N LEU A 126 SHEET 6 AA3 6 ILE A 151 PHE A 154 1 N PHE A 152 O VAL A 179 SHEET 1 AA4 7 VAL A 336 GLU A 338 0 SHEET 2 AA4 7 ILE A 357 VAL A 361 1 O ILE A 359 N GLY A 337 SHEET 3 AA4 7 ILE A 312 ALA A 316 1 N ILE A 314 O LEU A 358 SHEET 4 AA4 7 TYR A 380 TRP A 384 1 O ILE A 382 N PHE A 315 SHEET 5 AA4 7 GLY A 422 PHE A 427 1 O VAL A 423 N VAL A 381 SHEET 6 AA4 7 ILE A 288 ILE A 293 1 N ILE A 293 O ILE A 426 SHEET 7 AA4 7 ILE A 449 GLU A 451 1 O ILE A 450 N HIS A 290 SHEET 1 AA5 2 SER A 388 PHE A 391 0 SHEET 2 AA5 2 LEU A 396 PRO A 399 -1 O ILE A 398 N MET A 389 SHEET 1 AA6 2 ILE A 414 LEU A 415 0 SHEET 2 AA6 2 VAL A 418 LEU A 419 -1 O VAL A 418 N LEU A 415 SHEET 1 AA7 6 SER A 503 GLU A 507 0 SHEET 2 AA7 6 ILE A 510 THR A 517 -1 O VAL A 512 N ARG A 505 SHEET 3 AA7 6 GLY A 520 ALA A 526 -1 O GLY A 520 N THR A 517 SHEET 4 AA7 6 ARG A 480 VAL A 486 1 N LEU A 482 O LEU A 523 SHEET 5 AA7 6 GLU A 601 VAL A 604 1 O LEU A 603 N LEU A 483 SHEET 6 AA7 6 LEU A 630 ARG A 632 1 O ARG A 631 N VAL A 604 SHEET 1 AA8 3 GLN A 566 PHE A 567 0 SHEET 2 AA8 3 LYS A 558 CYS A 560 -1 N LYS A 558 O PHE A 567 SHEET 3 AA8 3 ILE A 582 ASP A 584 -1 O ASP A 583 N ARG A 559 SHEET 1 AA9 6 ASN A 725 GLU A 729 0 SHEET 2 AA9 6 GLU A 712 LEU A 720 -1 N LEU A 718 O LEU A 726 SHEET 3 AA9 6 THR A 924 HIS A 936 -1 O LYS A 931 N LEU A 717 SHEET 4 AA9 6 VAL A 736 LYS A 749 -1 N VAL A 737 O TYR A 925 SHEET 5 AA9 6 VAL A 879 VAL A 890 -1 O ILE A 885 N GLN A 743 SHEET 6 AA9 6 LYS A 893 ARG A 905 -1 O MET A 895 N VAL A 888 SHEET 1 AB1 2 VAL A 974 GLU A 976 0 SHEET 2 AB1 2 VAL A 982 PRO A 984 -1 O ARG A 983 N TYR A 975 LINK SG CYS A 11 ZN ZN A1101 1555 1555 2.33 LINK SG CYS A 14 ZN ZN A1101 1555 1555 2.33 LINK SG CYS A 29 ZN ZN A1101 1555 1555 2.33 LINK SG CYS A 32 ZN ZN A1101 1555 1555 2.33 LINK NE2 HIS A 58 ZN ZN A1103 1555 7565 2.02 LINK OE2 GLU A 303 ZN ZN A1103 1555 1555 2.18 LINK OE1 GLU A 306 ZN ZN A1103 1555 1555 2.20 LINK SG CYS A 560 ZN ZN A1102 1555 1555 2.33 LINK SG CYS A 563 ZN ZN A1102 1555 1555 2.33 LINK SG CYS A 574 ZN ZN A1102 1555 1555 2.33 LINK SG CYS A 577 ZN ZN A1102 1555 1555 2.32 LINK ZN ZN A1103 O HOH A1217 1555 7455 2.19 CRYST1 91.832 91.832 323.312 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003093 0.00000