HEADER TRANSFERASE 08-FEB-23 7FTS
TITLE CRYSTAL STRUCTURE OF HUMAN CYCLIC GMP-AMP SYNTHASE IN COMPLEX WITH 5-
TITLE 2 BROMO-N-[[2-FLUORO-5-(1-METHYLPYRAZOL-4-YL)PHENYL]METHYL]-2-
TITLE 3 HYDROXYBENZAMIDE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 161-522;
COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21
COMPND 6 DOMAIN-CONTAINING PROTEIN 1;
COMPND 7 EC: 2.7.7.86;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: CGAS, C6ORF150, MB21D1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A_CGAS(161-522_WT)
KEYWDS IMMUNE RESPONSE, TRANSFERASE, NTASE, DNA SENSOR
EXPDTA X-RAY DIFFRACTION
AUTHOR L.LEIBROCK,J.BENZ,K.GROEBKE-ZBINDEN,M.G.RUDOLPH
REVDAT 1 21-FEB-24 7FTS 0
JRNL AUTH K.GROEBKE-ZBINDEN,A.VANDEMEULEBROUCKE,M.HILBERT,M.G.RUDOLPH
JRNL TITL CRYSTAL STRUCTURE OF A HUMAN CYCLIC GMP-AMP SYNTHASE COMPLEX
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.22 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.14_3260
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 79.0
REMARK 3 NUMBER OF REFLECTIONS : 18182
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.223
REMARK 3 R VALUE (WORKING SET) : 0.219
REMARK 3 FREE R VALUE : 0.281
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070
REMARK 3 FREE R VALUE TEST SET COUNT : 921
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 48.1229 - 4.2367 1.00 3302 177 0.1774 0.2405
REMARK 3 2 4.2367 - 3.3631 1.00 3148 162 0.2167 0.2717
REMARK 3 3 3.3631 - 2.9380 1.00 3127 157 0.2633 0.3247
REMARK 3 4 2.9380 - 2.6694 1.00 3064 165 0.3075 0.3567
REMARK 3 5 2.6694 - 2.4781 0.88 2689 157 0.3073 0.3963
REMARK 3 6 2.4781 - 2.3320 0.49 1512 83 0.2978 0.3601
REMARK 3 7 2.3320 - 2.2152 0.14 419 20 0.3067 0.5156
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.650
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 79.95
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.92
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 198 )
REMARK 3 ORIGIN FOR THE GROUP (A): 33.8246 11.8330 25.2166
REMARK 3 T TENSOR
REMARK 3 T11: 0.3993 T22: 0.7916
REMARK 3 T33: 0.5660 T12: -0.0209
REMARK 3 T13: -0.0234 T23: 0.1173
REMARK 3 L TENSOR
REMARK 3 L11: 4.8266 L22: 9.0831
REMARK 3 L33: 3.0548 L12: 3.6579
REMARK 3 L13: -0.1651 L23: 0.9393
REMARK 3 S TENSOR
REMARK 3 S11: 0.1713 S12: -1.1303 S13: -0.8645
REMARK 3 S21: 0.3844 S22: -0.4754 S23: -1.2998
REMARK 3 S31: -0.1119 S32: 0.6933 S33: 0.2182
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 218 )
REMARK 3 ORIGIN FOR THE GROUP (A): 25.5550 -1.1293 19.9638
REMARK 3 T TENSOR
REMARK 3 T11: 0.8273 T22: 0.9301
REMARK 3 T33: 0.9277 T12: -0.1111
REMARK 3 T13: 0.0536 T23: 0.2709
REMARK 3 L TENSOR
REMARK 3 L11: 3.2917 L22: 9.0104
REMARK 3 L33: 5.5768 L12: -0.0105
REMARK 3 L13: -0.9280 L23: 1.5360
REMARK 3 S TENSOR
REMARK 3 S11: -0.4140 S12: -0.3457 S13: -0.6985
REMARK 3 S21: -0.2116 S22: 0.1725 S23: -0.6572
REMARK 3 S31: -0.2475 S32: 0.6600 S33: 0.2940
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 248 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.4344 4.4543 21.2953
REMARK 3 T TENSOR
REMARK 3 T11: 0.4735 T22: 0.5571
REMARK 3 T33: 0.6301 T12: -0.0189
REMARK 3 T13: 0.0790 T23: 0.0117
REMARK 3 L TENSOR
REMARK 3 L11: 4.1416 L22: 4.2811
REMARK 3 L33: 3.1136 L12: -1.6442
REMARK 3 L13: -1.3069 L23: -0.7441
REMARK 3 S TENSOR
REMARK 3 S11: -0.3080 S12: -0.0066 S13: -1.0264
REMARK 3 S21: -0.4692 S22: 0.1306 S23: 0.6529
REMARK 3 S31: 0.0112 S32: -0.2247 S33: 0.1253
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 289 )
REMARK 3 ORIGIN FOR THE GROUP (A): 11.4446 -9.4895 23.6703
REMARK 3 T TENSOR
REMARK 3 T11: 0.8056 T22: 0.7371
REMARK 3 T33: 1.5213 T12: -0.2459
REMARK 3 T13: 0.1754 T23: 0.5153
REMARK 3 L TENSOR
REMARK 3 L11: 5.3686 L22: 4.7612
REMARK 3 L33: 4.0385 L12: -3.7694
REMARK 3 L13: 0.5383 L23: -1.7531
REMARK 3 S TENSOR
REMARK 3 S11: 0.2208 S12: -0.2743 S13: -1.6246
REMARK 3 S21: -0.1586 S22: -0.6016 S23: 0.3617
REMARK 3 S31: 1.3142 S32: -0.1973 S33: -0.0838
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 315 )
REMARK 3 ORIGIN FOR THE GROUP (A): 27.1973 -0.1485 35.7527
REMARK 3 T TENSOR
REMARK 3 T11: 0.7875 T22: 1.3910
REMARK 3 T33: 0.8920 T12: 0.0999
REMARK 3 T13: -0.0156 T23: 0.5203
REMARK 3 L TENSOR
REMARK 3 L11: 7.4323 L22: 7.5253
REMARK 3 L33: 5.8324 L12: 1.8331
REMARK 3 L13: -1.0748 L23: 2.4285
REMARK 3 S TENSOR
REMARK 3 S11: -0.6526 S12: -1.6695 S13: -1.0396
REMARK 3 S21: 1.0536 S22: 0.2416 S23: -0.3234
REMARK 3 S31: 1.1235 S32: 0.0878 S33: 0.3271
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 316 THROUGH 397 )
REMARK 3 ORIGIN FOR THE GROUP (A): 14.9033 11.0914 13.2416
REMARK 3 T TENSOR
REMARK 3 T11: 0.2526 T22: 0.3281
REMARK 3 T33: 0.3144 T12: 0.0482
REMARK 3 T13: 0.0483 T23: -0.0742
REMARK 3 L TENSOR
REMARK 3 L11: 4.9465 L22: 4.8326
REMARK 3 L33: 2.8944 L12: 1.0226
REMARK 3 L13: -0.5298 L23: -0.7590
REMARK 3 S TENSOR
REMARK 3 S11: -0.1739 S12: 0.0955 S13: -0.5298
REMARK 3 S21: -0.2474 S22: 0.0688 S23: 0.4397
REMARK 3 S31: 0.1053 S32: -0.3085 S33: 0.0971
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 423 )
REMARK 3 ORIGIN FOR THE GROUP (A): 25.8142 26.0033 21.8388
REMARK 3 T TENSOR
REMARK 3 T11: 0.5220 T22: 0.4398
REMARK 3 T33: 0.2874 T12: -0.0528
REMARK 3 T13: -0.0338 T23: -0.1251
REMARK 3 L TENSOR
REMARK 3 L11: 3.8527 L22: 2.9975
REMARK 3 L33: 6.0421 L12: -0.5775
REMARK 3 L13: 1.0963 L23: 2.0293
REMARK 3 S TENSOR
REMARK 3 S11: 0.4415 S12: -0.6253 S13: 0.4095
REMARK 3 S21: 0.1739 S22: 0.1742 S23: -0.2238
REMARK 3 S31: -0.7614 S32: 1.0407 S33: -0.6301
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 424 THROUGH 497 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.9069 25.2517 22.9503
REMARK 3 T TENSOR
REMARK 3 T11: 0.3675 T22: 0.3810
REMARK 3 T33: 0.3641 T12: 0.0818
REMARK 3 T13: 0.0439 T23: -0.1022
REMARK 3 L TENSOR
REMARK 3 L11: 4.3489 L22: 3.6047
REMARK 3 L33: 4.9334 L12: 0.9951
REMARK 3 L13: -1.0231 L23: 0.1975
REMARK 3 S TENSOR
REMARK 3 S11: 0.3815 S12: -0.5932 S13: 0.5426
REMARK 3 S21: 0.5571 S22: -0.2314 S23: 0.3383
REMARK 3 S31: -0.5661 S32: -0.4789 S33: -0.1342
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 498 THROUGH 522 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.1572 31.4064 34.8551
REMARK 3 T TENSOR
REMARK 3 T11: 1.2113 T22: 0.8844
REMARK 3 T33: 0.7406 T12: -0.0237
REMARK 3 T13: 0.0890 T23: -0.4510
REMARK 3 L TENSOR
REMARK 3 L11: 7.2542 L22: 6.7039
REMARK 3 L33: 6.1378 L12: 3.1898
REMARK 3 L13: -0.4586 L23: 0.8561
REMARK 3 S TENSOR
REMARK 3 S11: 0.7111 S12: -1.1526 S13: 1.4075
REMARK 3 S21: 0.9768 S22: 0.0159 S23: -0.4686
REMARK 3 S31: -1.2278 S32: 0.3220 S33: -0.4481
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: A LITTLE BIT HIGHER RFREE THAN EXPECTED
REMARK 3 FOR THIS RESOLUTION. LIGAND DENSITY IS CLEAR.
REMARK 4
REMARK 4 7FTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-23.
REMARK 100 THE DEPOSITION ID IS D_1001405337.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000030
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22835
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220
REMARK 200 RESOLUTION RANGE LOW (A) : 81.970
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0
REMARK 200 DATA REDUNDANCY : 7.030
REMARK 200 R MERGE (I) : 0.06900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7400
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27
REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6
REMARK 200 DATA REDUNDANCY IN SHELL : 6.70
REMARK 200 R MERGE FOR SHELL (I) : 2.76400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.640
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: INHOUSE MODEL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.11
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12 MG/ML PROTEIN IN 25 MM TRIS/HCL
REMARK 280 PH7.5, 500MM NACL, 2MM TCEP, SUPPLEMENTED WITH 10X MOLAR EXCESS
REMARK 280 OF LIGAND AND, IF NEEDED, WITH 10 MM MGCL2 AND 5MM ATP, THEN
REMARK 280 MIXED 1:1 WITH RESERVOIR OF THE PROCOMPLEX SCREEN. SEVERAL
REMARK 280 CONDITIONS RESULTED IN CRYSTALS, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,-Y,-Z+1/2
REMARK 290 4555 -X+1/2,-Y,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 22.83800
REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.97300
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 22.83800
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.97300
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 364
REMARK 465 LYS A 365
REMARK 465 GLU A 366
REMARK 465 GLY A 367
REMARK 465 ASN A 368
REMARK 465 GLY A 369
REMARK 465 PHE A 370
REMARK 465 GLN A 371
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU A 372 CD GLU A 372 OE2 0.080
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 213 59.85 -108.57
REMARK 500 ARG A 236 71.43 50.75
REMARK 500 ARG A 246 -37.30 72.78
REMARK 500 ARG A 255 80.27 58.92
REMARK 500 ASN A 256 -67.01 -94.47
REMARK 500 LYS A 258 -1.14 -50.51
REMARK 500 GLU A 259 63.54 -104.90
REMARK 500 GLU A 267 78.27 -151.18
REMARK 500 LEU A 277 16.19 -64.27
REMARK 500 ASP A 293 -84.07 -58.12
REMARK 500 SER A 313 -152.07 52.30
REMARK 500 SER A 345 147.36 94.73
REMARK 500 GLU A 373 55.77 -110.93
REMARK 500 ASN A 389 75.27 -156.44
REMARK 500 PHE A 516 74.02 39.48
REMARK 500 VAL A 518 8.94 -61.41
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 SER A 305 PRO A 306 142.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 601 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 390 NE2
REMARK 620 2 CYS A 396 SG 116.9
REMARK 620 3 CYS A 397 SG 99.9 117.2
REMARK 620 4 CYS A 404 SG 105.7 103.9 113.1
REMARK 620 N 1 2 3
DBREF 7FTS A 161 522 UNP Q8N884 CGAS_HUMAN 161 522
SEQRES 1 A 362 GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU LYS
SEQRES 2 A 362 LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET VAL
SEQRES 3 A 362 LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS CYS
SEQRES 4 A 362 ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR GLY
SEQRES 5 A 362 SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN GLU
SEQRES 6 A 362 PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE GLN
SEQRES 7 A 362 LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE VAL
SEQRES 8 A 362 LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER GLN
SEQRES 9 A 362 PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET LEU
SEQRES 10 A 362 SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN ASP
SEQRES 11 A 362 ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG GLY
SEQRES 12 A 362 GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS ILE
SEQRES 13 A 362 SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SER
SEQRES 14 A 362 TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN ASN
SEQRES 15 A 362 TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU LYS
SEQRES 16 A 362 PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY ASN
SEQRES 17 A 362 GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER HIS
SEQRES 18 A 362 ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER LYS
SEQRES 19 A 362 THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG LYS
SEQRES 20 A 362 ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN LEU
SEQRES 21 A 362 LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS PHE
SEQRES 22 A 362 SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL CYS
SEQRES 23 A 362 THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS ASP
SEQRES 24 A 362 LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE LEU
SEQRES 25 A 362 GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE ILE
SEQRES 26 A 362 PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP LYS
SEQRES 27 A 362 ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR GLU
SEQRES 28 A 362 ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE
HET ZN A 601 1
HET YPU A 602 25
HETNAM ZN ZINC ION
HETNAM YPU 5-BROMO-N-{[(5P)-2-FLUORO-5-(1-METHYL-1H-PYRAZOL-4-YL)
HETNAM 2 YPU PHENYL]METHYL}-2-HYDROXYBENZAMIDE
FORMUL 2 ZN ZN 2+
FORMUL 3 YPU C18 H15 BR F N3 O2
FORMUL 4 HOH *7(H2 O)
HELIX 1 AA1 GLY A 161 ASP A 177 1 17
HELIX 2 AA2 THR A 181 CYS A 199 1 19
HELIX 3 AA3 ASN A 260 LEU A 266 5 7
HELIX 4 AA4 SER A 272 ASP A 290 1 19
HELIX 5 AA5 PRO A 331 GLN A 335 5 5
HELIX 6 AA6 SER A 345 LEU A 354 1 10
HELIX 7 AA7 PHE A 379 ASN A 388 1 10
HELIX 8 AA8 CYS A 405 PHE A 424 1 20
HELIX 9 AA9 SER A 434 ASN A 449 1 16
HELIX 10 AB1 GLN A 451 LYS A 458 5 8
HELIX 11 AB2 ASP A 459 GLU A 478 1 20
HELIX 12 AB3 ASP A 497 ASN A 514 1 18
HELIX 13 AB4 GLU A 515 ASP A 520 5 6
SHEET 1 AA1 7 GLY A 207 LEU A 208 0
SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207
SHEET 3 AA1 7 SER A 317 SER A 326 1 O SER A 317 N PHE A 226
SHEET 4 AA1 7 PHE A 357 PRO A 361 -1 O PHE A 357 N SER A 326
SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360
SHEET 6 AA1 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375
SHEET 7 AA1 7 ILE A 237 GLU A 241 -1 N GLN A 238 O LYS A 252
SHEET 1 AA2 5 GLY A 207 LEU A 208 0
SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207
SHEET 3 AA2 5 SER A 317 SER A 326 1 O SER A 317 N PHE A 226
SHEET 4 AA2 5 VAL A 308 ILE A 312 -1 N VAL A 308 O ILE A 320
SHEET 5 AA2 5 VAL A 296 LYS A 299 -1 N ILE A 297 O LEU A 311
LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.06
LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.41
LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.18
LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.25
CRYST1 45.676 59.423 163.946 90.00 90.00 90.00 P 21 2 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.021893 0.000000 0.000000 0.00000
SCALE2 0.000000 0.016829 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006100 0.00000