HEADER TRANSFERASE 08-FEB-23 7FTZ TITLE CRYSTAL STRUCTURE OF HUMAN CYCLIC GMP-AMP SYNTHASE IN COMPLEX WITH 2- TITLE 2 [2-[3-[[(5-BROMO-2-HYDROXYBENZOYL)AMINO]METHYL]ANILINO]-1,3-THIAZOL- TITLE 3 4-YL]ACETIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 161-522; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,H-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CGAS, C6ORF150, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A_CGAS(161-522_WT) KEYWDS IMMUNE RESPONSE, TRANSFERASE, NTASE, DNA SENSOR EXPDTA X-RAY DIFFRACTION AUTHOR L.LEIBROCK,J.BENZ,K.GROEBKE-ZBINDEN,M.G.RUDOLPH REVDAT 2 18-FEB-26 7FTZ 1 REMARK REVDAT 1 21-FEB-24 7FTZ 0 JRNL AUTH K.GROEBKE-ZBINDEN,A.VANDEMEULEBROUCKE,M.HILBERT,M.G.RUDOLPH JRNL TITL CRYSTAL STRUCTURE OF A HUMAN CYCLIC GMP-AMP SYNTHASE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 24570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1271 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.54 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 31.08 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 492 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2278 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 462 REMARK 3 BIN R VALUE (WORKING SET) : 0.2298 REMARK 3 BIN FREE R VALUE : 0.1969 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.66500 REMARK 3 B22 (A**2) : 4.53350 REMARK 3 B33 (A**2) : 1.13150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.25300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.400 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 1.305 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.347 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 1.538 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.355 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.911 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5952 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7978 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2206 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1026 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5952 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 742 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6256 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.48 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.65 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|161 - A|181 } REMARK 3 ORIGIN FOR THE GROUP (A): -58.2553 -37.6836 16.2157 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: -0.2012 REMARK 3 T33: 0.0611 T12: -0.1546 REMARK 3 T13: 0.1840 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: -0.0516 L22: 6.1683 REMARK 3 L33: 0.0516 L12: -1.3945 REMARK 3 L13: 0.0588 L23: -0.2636 REMARK 3 S TENSOR REMARK 3 S11: -0.0861 S12: -0.0788 S13: -0.1631 REMARK 3 S21: -0.1018 S22: -0.0785 S23: 0.0332 REMARK 3 S31: 0.2624 S32: 0.3282 S33: 0.1645 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|182 - A|252 } REMARK 3 ORIGIN FOR THE GROUP (A): -33.9615 -22.5737 22.7201 REMARK 3 T TENSOR REMARK 3 T11: -0.4954 T22: 0.2217 REMARK 3 T33: -0.1868 T12: -0.2606 REMARK 3 T13: 0.0737 T23: 0.2062 REMARK 3 L TENSOR REMARK 3 L11: 4.0978 L22: 3.5802 REMARK 3 L33: 5.4870 L12: -1.7278 REMARK 3 L13: 0.9553 L23: 0.5972 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: -0.1223 S13: -0.0153 REMARK 3 S21: 0.2506 S22: 0.1225 S23: -0.5179 REMARK 3 S31: 0.1231 S32: 0.7800 S33: -0.0669 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|253 - A|354 } REMARK 3 ORIGIN FOR THE GROUP (A): -33.9414 -19.6528 21.8071 REMARK 3 T TENSOR REMARK 3 T11: -0.3352 T22: 0.0013 REMARK 3 T33: -0.1593 T12: -0.1150 REMARK 3 T13: 0.0126 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 5.1259 L22: 3.5744 REMARK 3 L33: 3.0842 L12: -1.5412 REMARK 3 L13: -2.6512 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: -0.0075 S13: 0.3119 REMARK 3 S21: -0.1605 S22: -0.1025 S23: -0.7560 REMARK 3 S31: -0.2821 S32: 0.6891 S33: 0.0456 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|355 - A|520 } REMARK 3 ORIGIN FOR THE GROUP (A): -55.7897 -18.1904 18.9472 REMARK 3 T TENSOR REMARK 3 T11: -0.2020 T22: -0.1527 REMARK 3 T33: -0.0896 T12: -0.0946 REMARK 3 T13: 0.1015 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.7812 L22: 1.3690 REMARK 3 L33: 4.1147 L12: -0.6737 REMARK 3 L13: 0.3153 L23: -0.5592 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.2323 S13: 0.0237 REMARK 3 S21: -0.0765 S22: -0.0786 S23: -0.1200 REMARK 3 S31: -0.0196 S32: 0.3801 S33: 0.0552 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { B|161 - B|315 } REMARK 3 ORIGIN FOR THE GROUP (A): -34.4636 -26.1816 64.7830 REMARK 3 T TENSOR REMARK 3 T11: -0.4293 T22: 0.1352 REMARK 3 T33: -0.0645 T12: 0.1962 REMARK 3 T13: 0.0224 T23: 0.1814 REMARK 3 L TENSOR REMARK 3 L11: 2.5741 L22: 1.2980 REMARK 3 L33: 1.9946 L12: 1.7071 REMARK 3 L13: -0.3831 L23: 0.2643 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: -0.0939 S13: 0.4645 REMARK 3 S21: 0.1210 S22: -0.0354 S23: -1.0091 REMARK 3 S31: -0.1201 S32: 1.1624 S33: 0.1178 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|316 - B|520 } REMARK 3 ORIGIN FOR THE GROUP (A): -54.0309 -32.7908 62.0479 REMARK 3 T TENSOR REMARK 3 T11: -0.2708 T22: -0.1623 REMARK 3 T33: -0.1296 T12: 0.1056 REMARK 3 T13: 0.0924 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.7795 L22: 2.1741 REMARK 3 L33: 4.3467 L12: 0.4698 REMARK 3 L13: -0.5250 L23: -0.6484 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.2262 S13: -0.0351 REMARK 3 S21: 0.0059 S22: -0.1286 S23: -0.2613 REMARK 3 S31: 0.0983 S32: 0.6445 S33: 0.1287 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LIGAND WELL DEFINED BY ELECTRON DENSITY REMARK 3 BUT PROTEIN SEEMS QUITE MOBILE. REMARK 4 REMARK 4 7FTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1001405344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29674 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 83.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.718 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.78 REMARK 200 R MERGE FOR SHELL (I) : 2.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12 MG/ML PROTEIN IN 25 MM TRIS/HCL REMARK 280 PH7.5, 500MM NACL, 2MM TCEP, SUPPLEMENTED WITH 10X MOLAR EXCESS REMARK 280 OF LIGAND AND, IF NEEDED, WITH 10 MM MGCL2 AND 5MM ATP, THEN REMARK 280 MIXED 1:1 WITH RESERVOIR OF THE PROCOMPLEX SCREEN. SEVERAL REMARK 280 CONDITIONS RESULTED IN CRYSTALS., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 109.50350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.47750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 109.50350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.47750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 255 REMARK 465 ASN A 256 REMARK 465 PRO A 257 REMARK 465 LYS A 258 REMARK 465 GLU A 366 REMARK 465 GLY A 367 REMARK 465 ASN A 368 REMARK 465 GLY A 369 REMARK 465 PHE A 370 REMARK 465 GLU A 521 REMARK 465 PHE A 522 REMARK 465 ARG B 255 REMARK 465 ASN B 256 REMARK 465 PRO B 257 REMARK 465 LYS B 258 REMARK 465 GLU B 366 REMARK 465 GLY B 367 REMARK 465 ASN B 368 REMARK 465 GLY B 369 REMARK 465 PHE B 370 REMARK 465 GLU B 521 REMARK 465 PHE B 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 371 CD OE1 NE2 REMARK 470 GLN B 371 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 372 CD GLU A 372 OE2 0.076 REMARK 500 GLU B 372 CD GLU B 372 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 176 -73.15 -70.94 REMARK 500 TYR A 215 83.53 -61.29 REMARK 500 SER A 243 43.10 25.45 REMARK 500 ARG A 246 -27.41 77.95 REMARK 500 PHE A 253 -164.45 -110.96 REMARK 500 ASP A 293 -73.37 -75.35 REMARK 500 SER A 313 -78.27 59.85 REMARK 500 GLU A 314 136.88 -177.11 REMARK 500 SER A 345 162.72 105.25 REMARK 500 GLU A 402 70.37 -116.18 REMARK 500 LEU A 495 -50.48 -128.62 REMARK 500 ARG B 176 -73.23 -70.82 REMARK 500 TYR B 215 83.83 -61.60 REMARK 500 GLU B 241 105.39 -59.29 REMARK 500 SER B 243 57.76 22.77 REMARK 500 ARG B 246 -27.09 74.82 REMARK 500 PHE B 253 -164.77 -110.70 REMARK 500 ASP B 293 -73.73 -75.58 REMARK 500 SER B 313 -114.65 56.44 REMARK 500 LYS B 315 -7.91 63.51 REMARK 500 SER B 345 162.90 105.31 REMARK 500 GLU B 373 59.45 -104.42 REMARK 500 CYS B 397 8.90 82.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 111.4 REMARK 620 3 CYS A 397 SG 103.4 120.6 REMARK 620 4 CYS A 404 SG 106.6 108.1 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 114.4 REMARK 620 3 CYS B 397 SG 100.1 110.4 REMARK 620 4 CYS B 404 SG 111.0 105.8 115.4 REMARK 620 N 1 2 3 DBREF 7FTZ A 161 522 UNP Q8N884 CGAS_HUMAN 161 522 DBREF 7FTZ B 161 522 UNP Q8N884 CGAS_HUMAN 161 522 SEQRES 1 A 362 GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU LYS SEQRES 2 A 362 LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET VAL SEQRES 3 A 362 LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS CYS SEQRES 4 A 362 ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR GLY SEQRES 5 A 362 SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN GLU SEQRES 6 A 362 PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE GLN SEQRES 7 A 362 LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE VAL SEQRES 8 A 362 LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER GLN SEQRES 9 A 362 PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET LEU SEQRES 10 A 362 SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN ASP SEQRES 11 A 362 ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG GLY SEQRES 12 A 362 GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS ILE SEQRES 13 A 362 SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SER SEQRES 14 A 362 TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN ASN SEQRES 15 A 362 TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU LYS SEQRES 16 A 362 PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY ASN SEQRES 17 A 362 GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER HIS SEQRES 18 A 362 ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER LYS SEQRES 19 A 362 THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG LYS SEQRES 20 A 362 ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN LEU SEQRES 21 A 362 LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS PHE SEQRES 22 A 362 SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL CYS SEQRES 23 A 362 THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS ASP SEQRES 24 A 362 LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE LEU SEQRES 25 A 362 GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE ILE SEQRES 26 A 362 PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP LYS SEQRES 27 A 362 ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR GLU SEQRES 28 A 362 ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE SEQRES 1 B 362 GLY ALA SER LYS LEU ARG ALA VAL LEU GLU LYS LEU LYS SEQRES 2 B 362 LEU SER ARG ASP ASP ILE SER THR ALA ALA GLY MET VAL SEQRES 3 B 362 LYS GLY VAL VAL ASP HIS LEU LEU LEU ARG LEU LYS CYS SEQRES 4 B 362 ASP SER ALA PHE ARG GLY VAL GLY LEU LEU ASN THR GLY SEQRES 5 B 362 SER TYR TYR GLU HIS VAL LYS ILE SER ALA PRO ASN GLU SEQRES 6 B 362 PHE ASP VAL MET PHE LYS LEU GLU VAL PRO ARG ILE GLN SEQRES 7 B 362 LEU GLU GLU TYR SER ASN THR ARG ALA TYR TYR PHE VAL SEQRES 8 B 362 LYS PHE LYS ARG ASN PRO LYS GLU ASN PRO LEU SER GLN SEQRES 9 B 362 PHE LEU GLU GLY GLU ILE LEU SER ALA SER LYS MET LEU SEQRES 10 B 362 SER LYS PHE ARG LYS ILE ILE LYS GLU GLU ILE ASN ASP SEQRES 11 B 362 ILE LYS ASP THR ASP VAL ILE MET LYS ARG LYS ARG GLY SEQRES 12 B 362 GLY SER PRO ALA VAL THR LEU LEU ILE SER GLU LYS ILE SEQRES 13 B 362 SER VAL ASP ILE THR LEU ALA LEU GLU SER LYS SER SER SEQRES 14 B 362 TRP PRO ALA SER THR GLN GLU GLY LEU ARG ILE GLN ASN SEQRES 15 B 362 TRP LEU SER ALA LYS VAL ARG LYS GLN LEU ARG LEU LYS SEQRES 16 B 362 PRO PHE TYR LEU VAL PRO LYS HIS ALA LYS GLU GLY ASN SEQRES 17 B 362 GLY PHE GLN GLU GLU THR TRP ARG LEU SER PHE SER HIS SEQRES 18 B 362 ILE GLU LYS GLU ILE LEU ASN ASN HIS GLY LYS SER LYS SEQRES 19 B 362 THR CYS CYS GLU ASN LYS GLU GLU LYS CYS CYS ARG LYS SEQRES 20 B 362 ASP CYS LEU LYS LEU MET LYS TYR LEU LEU GLU GLN LEU SEQRES 21 B 362 LYS GLU ARG PHE LYS ASP LYS LYS HIS LEU ASP LYS PHE SEQRES 22 B 362 SER SER TYR HIS VAL LYS THR ALA PHE PHE HIS VAL CYS SEQRES 23 B 362 THR GLN ASN PRO GLN ASP SER GLN TRP ASP ARG LYS ASP SEQRES 24 B 362 LEU GLY LEU CYS PHE ASP ASN CYS VAL THR TYR PHE LEU SEQRES 25 B 362 GLN CYS LEU ARG THR GLU LYS LEU GLU ASN TYR PHE ILE SEQRES 26 B 362 PRO GLU PHE ASN LEU PHE SER SER ASN LEU ILE ASP LYS SEQRES 27 B 362 ARG SER LYS GLU PHE LEU THR LYS GLN ILE GLU TYR GLU SEQRES 28 B 362 ARG ASN ASN GLU PHE PRO VAL PHE ASP GLU PHE HET ZN A 601 1 HET YQQ A 602 28 HET ZN B 601 1 HET YQQ B 602 28 HETNAM ZN ZINC ION HETNAM YQQ (2-{3-[(5-BROMO-2-HYDROXYBENZAMIDO)METHYL]ANILINO}-1,3- HETNAM 2 YQQ THIAZOL-4-YL)ACETIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 YQQ 2(C19 H16 BR N3 O4 S) FORMUL 7 HOH *84(H2 O) HELIX 1 AA1 GLY A 161 LEU A 174 1 14 HELIX 2 AA2 THR A 181 LYS A 198 1 18 HELIX 3 AA3 SER A 243 THR A 245 5 3 HELIX 4 AA4 LEU A 262 GLN A 264 5 3 HELIX 5 AA5 SER A 272 ASP A 290 1 19 HELIX 6 AA6 PRO A 331 GLN A 335 5 5 HELIX 7 AA7 SER A 345 ARG A 353 1 9 HELIX 8 AA8 PHE A 379 ASN A 388 1 10 HELIX 9 AA9 CYS A 405 PHE A 424 1 20 HELIX 10 AB1 SER A 434 ASN A 449 1 16 HELIX 11 AB2 GLN A 451 TRP A 455 5 5 HELIX 12 AB3 ASP A 456 LYS A 458 5 3 HELIX 13 AB4 ASP A 459 GLU A 478 1 20 HELIX 14 AB5 ASP A 497 ASN A 514 1 18 HELIX 15 AB6 GLU A 515 ASP A 520 5 6 HELIX 16 AB7 ALA B 162 LEU B 174 1 13 HELIX 17 AB8 THR B 181 LYS B 198 1 18 HELIX 18 AB9 SER B 243 THR B 245 5 3 HELIX 19 AC1 LEU B 262 GLN B 264 5 3 HELIX 20 AC2 SER B 272 ASP B 290 1 19 HELIX 21 AC3 PRO B 331 GLN B 335 5 5 HELIX 22 AC4 SER B 345 ARG B 353 1 9 HELIX 23 AC5 PHE B 379 ASN B 388 1 10 HELIX 24 AC6 CYS B 405 PHE B 424 1 20 HELIX 25 AC7 SER B 434 ASN B 449 1 16 HELIX 26 AC8 GLN B 451 TRP B 455 5 5 HELIX 27 AC9 ASP B 456 LYS B 458 5 3 HELIX 28 AD1 ASP B 459 GLU B 478 1 20 HELIX 29 AD2 ASP B 497 ASN B 514 1 18 SHEET 1 AA1 7 VAL A 206 LEU A 208 0 SHEET 2 AA1 7 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA1 7 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 AA1 7 PHE A 357 PRO A 361 -1 O LEU A 359 N LEU A 324 SHEET 5 AA1 7 TRP A 375 SER A 378 -1 O SER A 378 N TYR A 358 SHEET 6 AA1 7 TYR A 248 LYS A 252 -1 N TYR A 249 O TRP A 375 SHEET 7 AA1 7 GLN A 238 GLU A 241 -1 N GLN A 238 O LYS A 252 SHEET 1 AA2 5 VAL A 206 LEU A 208 0 SHEET 2 AA2 5 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 AA2 5 ILE A 316 SER A 326 1 O SER A 317 N PHE A 226 SHEET 4 AA2 5 VAL A 308 ILE A 312 -1 N VAL A 308 O ILE A 320 SHEET 5 AA2 5 ILE A 297 LYS A 299 -1 N LYS A 299 O THR A 309 SHEET 1 AA3 2 LEU A 266 GLU A 267 0 SHEET 2 AA3 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 SHEET 1 AA4 7 VAL B 206 LEU B 208 0 SHEET 2 AA4 7 GLU B 225 GLU B 233 -1 O LYS B 231 N GLY B 207 SHEET 3 AA4 7 ILE B 316 SER B 326 1 O THR B 321 N PHE B 230 SHEET 4 AA4 7 PHE B 357 PRO B 361 -1 O LEU B 359 N LEU B 324 SHEET 5 AA4 7 TRP B 375 SER B 378 -1 O SER B 378 N TYR B 358 SHEET 6 AA4 7 TYR B 248 LYS B 252 -1 N TYR B 249 O TRP B 375 SHEET 7 AA4 7 GLN B 238 GLU B 241 -1 N GLN B 238 O LYS B 252 SHEET 1 AA5 5 VAL B 206 LEU B 208 0 SHEET 2 AA5 5 GLU B 225 GLU B 233 -1 O LYS B 231 N GLY B 207 SHEET 3 AA5 5 ILE B 316 SER B 326 1 O THR B 321 N PHE B 230 SHEET 4 AA5 5 VAL B 308 ILE B 312 -1 N VAL B 308 O ILE B 320 SHEET 5 AA5 5 ILE B 297 LYS B 299 -1 N LYS B 299 O THR B 309 SHEET 1 AA6 2 LEU B 266 GLU B 267 0 SHEET 2 AA6 2 ILE B 270 LEU B 271 -1 O ILE B 270 N GLU B 267 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.27 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.47 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.54 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.16 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.20 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.49 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.51 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.49 CISPEP 1 SER A 305 PRO A 306 0 2.83 CISPEP 2 SER B 305 PRO B 306 0 2.77 CRYST1 219.007 46.955 88.973 90.00 110.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004566 0.000000 0.001718 0.00000 SCALE2 0.000000 0.021297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012009 0.00000 CONECT 1779 5773 CONECT 1820 5773 CONECT 1826 5773 CONECT 1885 5773 CONECT 4665 5802 CONECT 4706 5802 CONECT 4712 5802 CONECT 4771 5802 CONECT 5773 1779 1820 1826 1885 CONECT 5774 5777 5786 5793 CONECT 5775 5778 5786 5787 CONECT 5776 5777 5787 CONECT 5777 5774 5776 CONECT 5778 5775 5794 CONECT 5779 5780 5794 5797 CONECT 5780 5779 5781 5785 CONECT 5781 5780 5782 5796 CONECT 5782 5781 5783 CONECT 5783 5782 5784 CONECT 5784 5783 5785 5801 CONECT 5785 5780 5784 CONECT 5786 5774 5775 CONECT 5787 5775 5776 CONECT 5788 5793 5795 5800 CONECT 5789 5790 5791 5795 CONECT 5790 5789 5800 CONECT 5791 5789 5792 CONECT 5792 5791 5798 5799 CONECT 5793 5774 5788 CONECT 5794 5778 5779 CONECT 5795 5788 5789 CONECT 5796 5781 CONECT 5797 5779 CONECT 5798 5792 CONECT 5799 5792 CONECT 5800 5788 5790 CONECT 5801 5784 CONECT 5802 4665 4706 4712 4771 CONECT 5803 5806 5815 5822 CONECT 5804 5807 5815 5816 CONECT 5805 5806 5816 CONECT 5806 5803 5805 CONECT 5807 5804 5823 CONECT 5808 5809 5823 5826 CONECT 5809 5808 5810 5814 CONECT 5810 5809 5811 5825 CONECT 5811 5810 5812 CONECT 5812 5811 5813 CONECT 5813 5812 5814 5830 CONECT 5814 5809 5813 CONECT 5815 5803 5804 CONECT 5816 5804 5805 CONECT 5817 5822 5824 5829 CONECT 5818 5819 5820 5824 CONECT 5819 5818 5829 CONECT 5820 5818 5821 CONECT 5821 5820 5827 5828 CONECT 5822 5803 5817 CONECT 5823 5807 5808 CONECT 5824 5817 5818 CONECT 5825 5810 CONECT 5826 5808 CONECT 5827 5821 CONECT 5828 5821 CONECT 5829 5817 5819 CONECT 5830 5813 MASTER 438 0 4 29 28 0 0 6 5912 2 66 56 END