HEADER ISOMERASE 18-APR-23 7FVT TITLE CRYSTAL STRUCTURE OF S. AUREUS GYRASE IN COMPLEX WITH 6-[5-[2-[(4- TITLE 2 CHLORO-2,3-DIHYDRO-1H-INDEN-2-YL)METHYLAMINO]ETHYL]-2-OXO-1,3- TITLE 3 OXAZOLIDIN-3-YL]-4H-PYRIDO[3,2-B][1,4]OXAZIN-3-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B,DNA GYRASE SUBUNIT A CHIMERA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.6.2.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'); COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS N315; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 GENE: GYRB, SA0005, GYRA, SA0006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS DNA GYRASE, TOPOISOMERASE;, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.XU,J.BENZ,J.G.CUMMING,M.G.RUDOLPH REVDAT 2 16-AUG-23 7FVT 1 JRNL REVDAT 1 28-JUN-23 7FVT 0 JRNL AUTH J.G.CUMMING,L.KREIS,H.KUHNE,R.WERMUTH,M.VERCRUYSSE,C.KRAMER, JRNL AUTH 2 M.G.RUDOLPH,Z.XU JRNL TITL DISCOVERY OF A SERIES OF INDANE-CONTAINING NBTIS WITH JRNL TITL 2 ACTIVITY AGAINST MULTIDRUG-RESISTANT GRAM-NEGATIVE JRNL TITL 3 PATHOGENS. JRNL REF ACS MED.CHEM.LETT. V. 14 993 2023 JRNL REFN ISSN 1948-5875 JRNL PMID 37465290 JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00187 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12RC1_2801 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 102921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 5184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.1929 - 6.4634 1.00 3789 189 0.1905 0.1979 REMARK 3 2 6.4634 - 5.1309 1.00 3743 208 0.2011 0.2388 REMARK 3 3 5.1309 - 4.4825 1.00 3777 183 0.1671 0.2199 REMARK 3 4 4.4825 - 4.0728 1.00 3738 236 0.1657 0.2129 REMARK 3 5 4.0728 - 3.7809 1.00 3729 224 0.1740 0.2126 REMARK 3 6 3.7809 - 3.5580 1.00 3737 211 0.1798 0.2407 REMARK 3 7 3.5580 - 3.3798 1.00 3744 219 0.1824 0.2225 REMARK 3 8 3.3798 - 3.2327 1.00 3774 198 0.1931 0.2477 REMARK 3 9 3.2327 - 3.1082 1.00 3713 193 0.1978 0.2421 REMARK 3 10 3.1082 - 3.0010 1.00 3789 177 0.1981 0.2471 REMARK 3 11 3.0010 - 2.9072 1.00 3742 211 0.2024 0.2724 REMARK 3 12 2.9072 - 2.8241 1.00 3733 207 0.2122 0.2660 REMARK 3 13 2.8241 - 2.7497 1.00 3831 155 0.2110 0.2676 REMARK 3 14 2.7497 - 2.6826 1.00 3703 229 0.2102 0.2626 REMARK 3 15 2.6826 - 2.6216 1.00 3777 213 0.2125 0.2764 REMARK 3 16 2.6216 - 2.5658 1.00 3743 172 0.2166 0.2638 REMARK 3 17 2.5658 - 2.5145 1.00 3675 232 0.2163 0.3144 REMARK 3 18 2.5145 - 2.4671 1.00 3816 186 0.2254 0.3242 REMARK 3 19 2.4671 - 2.4230 1.00 3792 190 0.2299 0.3007 REMARK 3 20 2.4230 - 2.3819 1.00 3671 223 0.2403 0.3138 REMARK 3 21 2.3819 - 2.3435 0.99 3720 192 0.2560 0.3335 REMARK 3 22 2.3435 - 2.3074 0.95 3573 191 0.2568 0.3295 REMARK 3 23 2.3074 - 2.2735 0.90 3356 153 0.2630 0.3426 REMARK 3 24 2.2735 - 2.2415 0.83 3146 150 0.2776 0.3427 REMARK 3 25 2.2415 - 2.2112 0.75 2817 127 0.2870 0.3574 REMARK 3 26 2.2112 - 2.1825 0.69 2604 125 0.2831 0.3307 REMARK 3 27 2.1825 - 2.1552 0.52 1941 106 0.3050 0.3341 REMARK 3 28 2.1552 - 2.1292 0.30 1138 60 0.3101 0.3402 REMARK 3 29 2.1292 - 2.1045 0.09 330 19 0.3056 0.3059 REMARK 3 30 2.1045 - 2.0808 0.03 96 5 0.2842 0.3694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 11744 REMARK 3 ANGLE : 0.887 15979 REMARK 3 CHIRALITY : 0.050 1795 REMARK 3 PLANARITY : 0.005 1965 REMARK 3 DIHEDRAL : 19.457 7120 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 1032 ) REMARK 3 ORIGIN FOR THE GROUP (A): 87.6635 52.6897 -49.5525 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.3684 REMARK 3 T33: 0.2667 T12: 0.0553 REMARK 3 T13: -0.0102 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 3.0797 L22: 0.9631 REMARK 3 L33: 1.8099 L12: -0.1903 REMARK 3 L13: -1.3280 L23: 0.0765 REMARK 3 S TENSOR REMARK 3 S11: 0.1981 S12: 0.5803 S13: 0.3926 REMARK 3 S21: -0.2070 S22: -0.0472 S23: -0.0170 REMARK 3 S31: -0.2724 S32: -0.1593 S33: -0.1324 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1033 THROUGH 1294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.5951 40.0731 -16.0652 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.2120 REMARK 3 T33: 0.3004 T12: 0.0284 REMARK 3 T13: 0.0140 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.5789 L22: 0.4654 REMARK 3 L33: 1.3802 L12: 0.2262 REMARK 3 L13: 0.1033 L23: 0.3512 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0175 S13: -0.0791 REMARK 3 S21: -0.0789 S22: 0.0083 S23: -0.0591 REMARK 3 S31: -0.0345 S32: 0.1069 S33: -0.0087 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1295 THROUGH 1490 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.6059 16.9324 -18.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.2169 REMARK 3 T33: 0.2856 T12: -0.0160 REMARK 3 T13: 0.0107 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.3832 L22: 1.2980 REMARK 3 L33: 0.5059 L12: -0.5544 REMARK 3 L13: -0.1283 L23: 0.3473 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: 0.0324 S13: -0.1163 REMARK 3 S21: -0.0102 S22: -0.0067 S23: 0.1518 REMARK 3 S31: 0.0611 S32: -0.0269 S33: 0.0164 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 417 THROUGH 1032 ) REMARK 3 ORIGIN FOR THE GROUP (A): 111.4634 52.3878 -3.3271 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.2663 REMARK 3 T33: 0.2046 T12: 0.0115 REMARK 3 T13: -0.0053 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 2.2744 L22: 1.8063 REMARK 3 L33: 1.4439 L12: 0.4339 REMARK 3 L13: -0.7474 L23: -0.1719 REMARK 3 S TENSOR REMARK 3 S11: 0.1327 S12: -0.3390 S13: 0.2168 REMARK 3 S21: 0.2821 S22: 0.0081 S23: 0.0579 REMARK 3 S31: -0.1491 S32: 0.0556 S33: -0.1273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1033 THROUGH 1347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.5045 38.0095 -37.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.1860 REMARK 3 T33: 0.2594 T12: 0.0164 REMARK 3 T13: 0.0009 T23: -0.0650 REMARK 3 L TENSOR REMARK 3 L11: 0.7069 L22: 0.5900 REMARK 3 L33: 1.7352 L12: 0.0404 REMARK 3 L13: -0.1800 L23: -0.2389 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: 0.0519 S13: -0.0847 REMARK 3 S21: 0.0684 S22: 0.0458 S23: 0.0104 REMARK 3 S31: -0.1408 S32: -0.1330 S33: -0.0151 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1348 THROUGH 1491 ) REMARK 3 ORIGIN FOR THE GROUP (A): 116.5475 0.7152 -26.5872 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.2422 REMARK 3 T33: 0.3067 T12: 0.0536 REMARK 3 T13: -0.0046 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.9096 L22: 2.6642 REMARK 3 L33: 0.4958 L12: 1.4269 REMARK 3 L13: -0.4190 L23: -0.9874 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.0301 S13: -0.1418 REMARK 3 S21: -0.0148 S22: 0.0822 S23: -0.2012 REMARK 3 S31: 0.1501 S32: -0.0017 S33: -0.0026 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 120.8769 52.5908 -30.1773 REMARK 3 T TENSOR REMARK 3 T11: 0.4388 T22: 0.2342 REMARK 3 T33: 0.3372 T12: -0.0339 REMARK 3 T13: -0.0338 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.2578 L22: 4.0565 REMARK 3 L33: 1.2188 L12: 3.6342 REMARK 3 L13: -1.9618 L23: -2.2050 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: 0.1831 S13: 0.6281 REMARK 3 S21: -1.3190 S22: 0.3369 S23: 0.7747 REMARK 3 S31: -0.2000 S32: 0.1033 S33: -0.2526 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.5637 46.0373 -20.2907 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.2077 REMARK 3 T33: 0.2437 T12: -0.0119 REMARK 3 T13: 0.0187 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.5328 L22: 3.3107 REMARK 3 L33: 6.3357 L12: 2.2250 REMARK 3 L13: -0.7429 L23: -0.7856 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.0809 S13: 0.2715 REMARK 3 S21: -0.2878 S22: 0.2262 S23: -0.1464 REMARK 3 S31: 0.1369 S32: -0.4835 S33: -0.1959 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.3081 55.3332 -28.5359 REMARK 3 T TENSOR REMARK 3 T11: 0.4225 T22: 0.3106 REMARK 3 T33: 0.2897 T12: 0.1097 REMARK 3 T13: -0.0273 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.6404 L22: 3.6154 REMARK 3 L33: 2.0872 L12: -0.3650 REMARK 3 L13: -1.2587 L23: 0.0126 REMARK 3 S TENSOR REMARK 3 S11: -0.3391 S12: -0.3764 S13: 0.1140 REMARK 3 S21: 0.2981 S22: 0.1301 S23: -0.1681 REMARK 3 S31: 0.2754 S32: 0.3080 S33: 0.2154 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.1523 51.6735 -27.9247 REMARK 3 T TENSOR REMARK 3 T11: 0.3765 T22: 0.3276 REMARK 3 T33: 0.3659 T12: 0.1002 REMARK 3 T13: -0.0158 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 4.9158 L22: 2.2246 REMARK 3 L33: 4.4361 L12: -0.9911 REMARK 3 L13: -1.3107 L23: 0.6055 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.1905 S13: 0.7327 REMARK 3 S21: 0.2518 S22: 0.2678 S23: 0.1361 REMARK 3 S31: -0.3587 S32: 0.1877 S33: -0.2376 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 118.0087 52.3057 -23.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.3641 T22: 0.2415 REMARK 3 T33: 0.3030 T12: -0.0612 REMARK 3 T13: -0.0222 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 5.3880 L22: 4.2424 REMARK 3 L33: 3.0286 L12: 0.2793 REMARK 3 L13: -1.9139 L23: -0.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.1963 S12: 0.4577 S13: 0.1397 REMARK 3 S21: -0.3684 S22: 0.2934 S23: -0.0373 REMARK 3 S31: 0.2981 S32: -0.1886 S33: -0.0642 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LIGAND NOT WELL DEFINED BY ELECTRON REMARK 3 DENSITY. CHIRAL CENTERS WERE ASSIGNED BASED ON BEST GEOMETRY. REMARK 3 LINKER IS DISORDERED. TRIED TO USE CSD-COMPATIBLE CONFORMATION. REMARK 4 REMARK 4 7FVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-23. REMARK 100 THE DEPOSITION ID IS D_1001405410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118711 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 80.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.45 REMARK 200 R MERGE (I) : 0.20300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.77 REMARK 200 R MERGE FOR SHELL (I) : 3.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROBATCH UNDER PARAFFIN OIL: 500 NL REMARK 280 EACH OF TERNARY COMPLEX AND RESERVOIR CONSISTING OF 14% PEG5000 REMARK 280 MME, 100MM BISTRIS/HCL PH 5.5: TERNARY COMPLEX MADE BY MIXING REMARK 280 14.5MG/ML GYRASE IN 20MM HEPES/NAOH, PH7.0, 100MM NA2SO4, 3MM REMARK 280 MNCL2, 0.5MM TCEP WITH TWICE THE MOLAR RATIO OF DNA DUPLEX (5- REMARK 280 AGCCGTAGGGCCCTACGGCT-3, 3-TCGGCATCCCGGGATGCCGA-5) AND SIX TIMES REMARK 280 MOLAR RATIO OF SMALL MOLECULE INHIBITOR., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.88367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 271.76733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 203.82550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 339.70917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.94183 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 409 REMARK 465 ASP A 410 REMARK 465 VAL A 411 REMARK 465 ALA A 412 REMARK 465 SER A 413 REMARK 465 LEU A 414 REMARK 465 PRO A 415 REMARK 465 GLY A 416 REMARK 465 ALA A 997 REMARK 465 ASN A 998 REMARK 465 LEU A 999 REMARK 465 ASP A 1000 REMARK 465 PHE A 1001 REMARK 465 ALA A 1002 REMARK 465 GLU A 1003 REMARK 465 LEU A 1004 REMARK 465 PRO A 1005 REMARK 465 GLN A 1006 REMARK 465 SER A 1007 REMARK 465 ARG A 1008 REMARK 465 ILE A 1009 REMARK 465 GLY A 1491 REMARK 465 MET B 409 REMARK 465 ASP B 410 REMARK 465 VAL B 411 REMARK 465 ALA B 412 REMARK 465 SER B 413 REMARK 465 LEU B 414 REMARK 465 PRO B 415 REMARK 465 GLY B 416 REMARK 465 ALA B 997 REMARK 465 ASN B 998 REMARK 465 LEU B 999 REMARK 465 ASP B 1000 REMARK 465 PHE B 1001 REMARK 465 ALA B 1002 REMARK 465 GLU B 1003 REMARK 465 LEU B 1004 REMARK 465 PRO B 1005 REMARK 465 GLN B 1006 REMARK 465 SER B 1007 REMARK 465 ARG B 1008 REMARK 465 ILE B 1009 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT D 20 O5' C5' C4' O4' C3' O3' C2' REMARK 470 DT D 20 C1' N1 C2 O2 N3 C4 O4 REMARK 470 DT D 20 C5 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 1462 O HOH A 1601 2.06 REMARK 500 OG SER B 1084 O HOH B 1601 2.11 REMARK 500 O HOH A 1769 O HOH A 1782 2.14 REMARK 500 O HOH A 1773 O HOH A 1785 2.15 REMARK 500 O HOH B 1761 O HOH B 1856 2.16 REMARK 500 O HOH C 107 O HOH C 129 2.16 REMARK 500 O HOH B 1718 O HOH B 1846 2.17 REMARK 500 O HOH B 1759 O HOH B 1838 2.18 REMARK 500 O HOH B 1800 O HOH B 1816 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 5 O3' DG D 5 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 13 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 19 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 12 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 19 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 457 -147.74 -95.62 REMARK 500 ARG A 458 51.59 -142.63 REMARK 500 ALA A1032 38.78 -140.53 REMARK 500 ARG A1033 -65.85 -159.92 REMARK 500 MET A1058 66.83 -100.30 REMARK 500 TYR A1078 -31.72 -135.78 REMARK 500 ALA A1162 71.10 54.87 REMARK 500 ALA A1176 -141.12 -97.17 REMARK 500 ASN A1201 92.47 -163.47 REMARK 500 ALA A1221 -121.67 64.10 REMARK 500 ASP A1311 -7.42 75.70 REMARK 500 PRO A1326 6.77 -65.60 REMARK 500 ASN A1334 84.97 -156.40 REMARK 500 LEU B 457 -150.20 -97.09 REMARK 500 MET B 528 37.76 -141.29 REMARK 500 THR B 595 -35.07 -133.35 REMARK 500 ALA B1032 41.46 -145.56 REMARK 500 ARG B1033 -69.59 -160.75 REMARK 500 ALA B1162 75.07 49.15 REMARK 500 ALA B1176 -137.18 -105.33 REMARK 500 ASN B1201 85.21 -168.87 REMARK 500 ALA B1221 -118.13 60.62 REMARK 500 LYS B1284 56.06 39.40 REMARK 500 ARG B1303 98.84 -160.51 REMARK 500 ASP B1311 -17.36 83.59 REMARK 500 ASN B1334 81.84 -157.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 435 OE2 REMARK 620 2 ASP A 508 OD2 85.2 REMARK 620 3 HOH A1620 O 167.9 101.6 REMARK 620 4 HOH A1645 O 78.6 114.7 89.4 REMARK 620 5 DG D 8 O3' 80.2 144.0 99.3 94.5 REMARK 620 6 DG D 9 OP1 96.6 92.9 93.1 151.3 56.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 435 OE2 REMARK 620 2 ASP B 508 OD2 88.8 REMARK 620 3 HOH B1634 O 79.4 119.9 REMARK 620 4 HOH B1713 O 165.3 105.5 90.2 REMARK 620 5 DG C 8 O3' 79.4 142.8 92.6 90.9 REMARK 620 6 DG C 9 OP1 94.4 91.3 147.7 88.8 55.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B1322 O REMARK 620 2 THR B1325 O 98.2 REMARK 620 3 GLN B1328 O 120.1 85.9 REMARK 620 4 HOH B1799 O 130.7 78.2 108.8 REMARK 620 5 HOH B1801 O 82.9 176.6 90.8 103.5 REMARK 620 N 1 2 3 4 DBREF 7FVT A 410 1001 UNP P66937 GYRB_STAAN 410 644 DBREF 7FVT A 1002 1491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 7FVT B 410 1001 UNP P66937 GYRB_STAAN 410 644 DBREF 7FVT B 1002 1491 UNP Q99XG5 GYRA_STAAN 2 491 DBREF 7FVT C 1 20 PDB 7FVT 7FVT 1 20 DBREF 7FVT D 1 20 PDB 7FVT 7FVT 1 20 SEQADV 7FVT MET A 409 UNP P66937 INITIATING METHIONINE SEQADV 7FVT A UNP P66937 LEU 544 DELETION SEQADV 7FVT A UNP P66937 TYR 545 DELETION SEQADV 7FVT A UNP P66937 LYS 546 DELETION SEQADV 7FVT A UNP P66937 LEU 547 DELETION SEQADV 7FVT A UNP P66937 THR 548 DELETION SEQADV 7FVT A UNP P66937 GLN 549 DELETION SEQADV 7FVT A UNP P66937 GLY 550 DELETION SEQADV 7FVT A UNP P66937 LYS 551 DELETION SEQADV 7FVT A UNP P66937 GLN 552 DELETION SEQADV 7FVT A UNP P66937 LYS 553 DELETION SEQADV 7FVT A UNP P66937 TYR 554 DELETION SEQADV 7FVT A UNP P66937 TYR 555 DELETION SEQADV 7FVT A UNP P66937 VAL 556 DELETION SEQADV 7FVT A UNP P66937 TYR 557 DELETION SEQADV 7FVT A UNP P66937 ASN 558 DELETION SEQADV 7FVT A UNP P66937 ASP 559 DELETION SEQADV 7FVT A UNP P66937 ARG 560 DELETION SEQADV 7FVT A UNP P66937 GLU 561 DELETION SEQADV 7FVT A UNP P66937 LEU 562 DELETION SEQADV 7FVT A UNP P66937 ASP 563 DELETION SEQADV 7FVT A UNP P66937 LYS 564 DELETION SEQADV 7FVT A UNP P66937 LEU 565 DELETION SEQADV 7FVT A UNP P66937 LYS 566 DELETION SEQADV 7FVT A UNP P66937 SER 567 DELETION SEQADV 7FVT A UNP P66937 GLU 568 DELETION SEQADV 7FVT A UNP P66937 LEU 569 DELETION SEQADV 7FVT A UNP P66937 ASN 570 DELETION SEQADV 7FVT A UNP P66937 PRO 571 DELETION SEQADV 7FVT A UNP P66937 THR 572 DELETION SEQADV 7FVT A UNP P66937 PRO 573 DELETION SEQADV 7FVT A UNP P66937 LYS 574 DELETION SEQADV 7FVT A UNP P66937 TRP 575 DELETION SEQADV 7FVT A UNP P66937 SER 576 DELETION SEQADV 7FVT A UNP P66937 ILE 577 DELETION SEQADV 7FVT THR A 544 UNP P66937 ALA 578 CONFLICT SEQADV 7FVT GLY A 545 UNP P66937 ARG 579 CONFLICT SEQADV 7FVT PHE A 1123 UNP Q99XG5 TYR 123 ENGINEERED MUTATION SEQADV 7FVT MET B 409 UNP P66937 INITIATING METHIONINE SEQADV 7FVT B UNP P66937 LEU 544 DELETION SEQADV 7FVT B UNP P66937 TYR 545 DELETION SEQADV 7FVT B UNP P66937 LYS 546 DELETION SEQADV 7FVT B UNP P66937 LEU 547 DELETION SEQADV 7FVT B UNP P66937 THR 548 DELETION SEQADV 7FVT B UNP P66937 GLN 549 DELETION SEQADV 7FVT B UNP P66937 GLY 550 DELETION SEQADV 7FVT B UNP P66937 LYS 551 DELETION SEQADV 7FVT B UNP P66937 GLN 552 DELETION SEQADV 7FVT B UNP P66937 LYS 553 DELETION SEQADV 7FVT B UNP P66937 TYR 554 DELETION SEQADV 7FVT B UNP P66937 TYR 555 DELETION SEQADV 7FVT B UNP P66937 VAL 556 DELETION SEQADV 7FVT B UNP P66937 TYR 557 DELETION SEQADV 7FVT B UNP P66937 ASN 558 DELETION SEQADV 7FVT B UNP P66937 ASP 559 DELETION SEQADV 7FVT B UNP P66937 ARG 560 DELETION SEQADV 7FVT B UNP P66937 GLU 561 DELETION SEQADV 7FVT B UNP P66937 LEU 562 DELETION SEQADV 7FVT B UNP P66937 ASP 563 DELETION SEQADV 7FVT B UNP P66937 LYS 564 DELETION SEQADV 7FVT B UNP P66937 LEU 565 DELETION SEQADV 7FVT B UNP P66937 LYS 566 DELETION SEQADV 7FVT B UNP P66937 SER 567 DELETION SEQADV 7FVT B UNP P66937 GLU 568 DELETION SEQADV 7FVT B UNP P66937 LEU 569 DELETION SEQADV 7FVT B UNP P66937 ASN 570 DELETION SEQADV 7FVT B UNP P66937 PRO 571 DELETION SEQADV 7FVT B UNP P66937 THR 572 DELETION SEQADV 7FVT B UNP P66937 PRO 573 DELETION SEQADV 7FVT B UNP P66937 LYS 574 DELETION SEQADV 7FVT B UNP P66937 TRP 575 DELETION SEQADV 7FVT B UNP P66937 SER 576 DELETION SEQADV 7FVT B UNP P66937 ILE 577 DELETION SEQADV 7FVT THR B 544 UNP P66937 ALA 578 CONFLICT SEQADV 7FVT GLY B 545 UNP P66937 ARG 579 CONFLICT SEQADV 7FVT PHE B 1123 UNP Q99XG5 TYR 123 ENGINEERED MUTATION SEQRES 1 A 692 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 A 692 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 A 692 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 A 692 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 A 692 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 A 692 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 A 692 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 A 692 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 A 692 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 A 692 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 A 692 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 A 692 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 A 692 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 A 692 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 A 692 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 A 692 VAL TYR ALA ASN LEU ASP PHE ALA GLU LEU PRO GLN SER SEQRES 17 A 692 ARG ILE ASN GLU ARG ASN ILE THR SER GLU MET ARG GLU SEQRES 18 A 692 SER PHE LEU ASP TYR ALA MET SER VAL ILE VAL ALA ARG SEQRES 19 A 692 ALA LEU PRO ASP VAL ARG ASP GLY LEU LYS PRO VAL HIS SEQRES 20 A 692 ARG ARG ILE LEU TYR GLY LEU ASN GLU GLN GLY MET THR SEQRES 21 A 692 PRO ASP LYS SER TYR LYS LYS SER ALA ARG ILE VAL GLY SEQRES 22 A 692 ASP VAL MET GLY LYS TYR HIS PRO HIS GLY ASP SER SER SEQRES 23 A 692 ILE TYR GLU ALA MET VAL ARG MET ALA GLN ASP PHE SER SEQRES 24 A 692 TYR ARG TYR PRO LEU VAL ASP GLY GLN GLY ASN PHE GLY SEQRES 25 A 692 SER MET ASP GLY ASP GLY ALA ALA ALA MET ARG PHE THR SEQRES 26 A 692 GLU ALA ARG MET THR LYS ILE THR LEU GLU LEU LEU ARG SEQRES 27 A 692 ASP ILE ASN LYS ASP THR ILE ASP PHE ILE ASP ASN TYR SEQRES 28 A 692 ASP GLY ASN GLU ARG GLU PRO SER VAL LEU PRO ALA ARG SEQRES 29 A 692 PHE PRO ASN LEU LEU ALA ASN GLY ALA SER GLY ILE ALA SEQRES 30 A 692 VAL GLY MET ALA THR ASN ILE PRO PRO HIS ASN LEU THR SEQRES 31 A 692 GLU LEU ILE ASN GLY VAL LEU SER LEU SER LYS ASN PRO SEQRES 32 A 692 ASP ILE SER ILE ALA GLU LEU MET GLU ASP ILE GLU GLY SEQRES 33 A 692 PRO ASP PHE PRO THR ALA GLY LEU ILE LEU GLY LYS SER SEQRES 34 A 692 GLY ILE ARG ARG ALA TYR GLU THR GLY ARG GLY SER ILE SEQRES 35 A 692 GLN MET ARG SER ARG ALA VAL ILE GLU GLU ARG GLY GLY SEQRES 36 A 692 GLY ARG GLN ARG ILE VAL VAL THR GLU ILE PRO PHE GLN SEQRES 37 A 692 VAL ASN LYS ALA ARG MET ILE GLU LYS ILE ALA GLU LEU SEQRES 38 A 692 VAL ARG ASP LYS LYS ILE ASP GLY ILE THR ASP LEU ARG SEQRES 39 A 692 ASP GLU THR SER LEU ARG THR GLY VAL ARG VAL VAL ILE SEQRES 40 A 692 ASP VAL ARG LYS ASP ALA ASN ALA SER VAL ILE LEU ASN SEQRES 41 A 692 ASN LEU TYR LYS GLN THR PRO LEU GLN THR SER PHE GLY SEQRES 42 A 692 VAL ASN MET ILE ALA LEU VAL ASN GLY ARG PRO LYS LEU SEQRES 43 A 692 ILE ASN LEU LYS GLU ALA LEU VAL HIS TYR LEU GLU HIS SEQRES 44 A 692 GLN LYS THR VAL VAL ARG ARG ARG THR GLN TYR ASN LEU SEQRES 45 A 692 ARG LYS ALA LYS ASP ARG ALA HIS ILE LEU GLU GLY LEU SEQRES 46 A 692 ARG ILE ALA LEU ASP HIS ILE ASP GLU ILE ILE SER THR SEQRES 47 A 692 ILE ARG GLU SER ASP THR ASP LYS VAL ALA MET GLU SER SEQRES 48 A 692 LEU GLN GLN ARG PHE LYS LEU SER GLU LYS GLN ALA GLN SEQRES 49 A 692 ALA ILE LEU ASP MET ARG LEU ARG ARG LEU THR GLY LEU SEQRES 50 A 692 GLU ARG ASP LYS ILE GLU ALA GLU TYR ASN GLU LEU LEU SEQRES 51 A 692 ASN TYR ILE SER GLU LEU GLU THR ILE LEU ALA ASP GLU SEQRES 52 A 692 GLU VAL LEU LEU GLN LEU VAL ARG ASP GLU LEU THR GLU SEQRES 53 A 692 ILE ARG ASP ARG PHE GLY ASP ASP ARG ARG THR GLU ILE SEQRES 54 A 692 GLN LEU GLY SEQRES 1 B 692 MET ASP VAL ALA SER LEU PRO GLY LYS LEU ALA ASP CYS SEQRES 2 B 692 SER SER LYS SER PRO GLU GLU CYS GLU ILE PHE LEU VAL SEQRES 3 B 692 GLU GLY ASP SER ALA GLY GLY SER THR LYS SER GLY ARG SEQRES 4 B 692 ASP SER ARG THR GLN ALA ILE LEU PRO LEU ARG GLY LYS SEQRES 5 B 692 ILE LEU ASN VAL GLU LYS ALA ARG LEU ASP ARG ILE LEU SEQRES 6 B 692 ASN ASN ASN GLU ILE ARG GLN MET ILE THR ALA PHE GLY SEQRES 7 B 692 THR GLY ILE GLY GLY ASP PHE ASP LEU ALA LYS ALA ARG SEQRES 8 B 692 TYR HIS LYS ILE VAL ILE MET THR ASP ALA ASP VAL ASP SEQRES 9 B 692 GLY ALA HIS ILE ARG THR LEU LEU LEU THR PHE PHE TYR SEQRES 10 B 692 ARG PHE MET ARG PRO LEU ILE GLU ALA GLY TYR VAL TYR SEQRES 11 B 692 ILE ALA GLN PRO PRO THR GLY TYR LYS GLY LEU GLY GLU SEQRES 12 B 692 MET ASN ALA ASP GLN LEU TRP GLU THR THR MET ASN PRO SEQRES 13 B 692 GLU HIS ARG ALA LEU LEU GLN VAL LYS LEU GLU ASP ALA SEQRES 14 B 692 ILE GLU ALA ASP GLN THR PHE GLU MET LEU MET GLY ASP SEQRES 15 B 692 VAL VAL GLU ASN ARG ARG GLN PHE ILE GLU ASP ASN ALA SEQRES 16 B 692 VAL TYR ALA ASN LEU ASP PHE ALA GLU LEU PRO GLN SER SEQRES 17 B 692 ARG ILE ASN GLU ARG ASN ILE THR SER GLU MET ARG GLU SEQRES 18 B 692 SER PHE LEU ASP TYR ALA MET SER VAL ILE VAL ALA ARG SEQRES 19 B 692 ALA LEU PRO ASP VAL ARG ASP GLY LEU LYS PRO VAL HIS SEQRES 20 B 692 ARG ARG ILE LEU TYR GLY LEU ASN GLU GLN GLY MET THR SEQRES 21 B 692 PRO ASP LYS SER TYR LYS LYS SER ALA ARG ILE VAL GLY SEQRES 22 B 692 ASP VAL MET GLY LYS TYR HIS PRO HIS GLY ASP SER SER SEQRES 23 B 692 ILE TYR GLU ALA MET VAL ARG MET ALA GLN ASP PHE SER SEQRES 24 B 692 TYR ARG TYR PRO LEU VAL ASP GLY GLN GLY ASN PHE GLY SEQRES 25 B 692 SER MET ASP GLY ASP GLY ALA ALA ALA MET ARG PHE THR SEQRES 26 B 692 GLU ALA ARG MET THR LYS ILE THR LEU GLU LEU LEU ARG SEQRES 27 B 692 ASP ILE ASN LYS ASP THR ILE ASP PHE ILE ASP ASN TYR SEQRES 28 B 692 ASP GLY ASN GLU ARG GLU PRO SER VAL LEU PRO ALA ARG SEQRES 29 B 692 PHE PRO ASN LEU LEU ALA ASN GLY ALA SER GLY ILE ALA SEQRES 30 B 692 VAL GLY MET ALA THR ASN ILE PRO PRO HIS ASN LEU THR SEQRES 31 B 692 GLU LEU ILE ASN GLY VAL LEU SER LEU SER LYS ASN PRO SEQRES 32 B 692 ASP ILE SER ILE ALA GLU LEU MET GLU ASP ILE GLU GLY SEQRES 33 B 692 PRO ASP PHE PRO THR ALA GLY LEU ILE LEU GLY LYS SER SEQRES 34 B 692 GLY ILE ARG ARG ALA TYR GLU THR GLY ARG GLY SER ILE SEQRES 35 B 692 GLN MET ARG SER ARG ALA VAL ILE GLU GLU ARG GLY GLY SEQRES 36 B 692 GLY ARG GLN ARG ILE VAL VAL THR GLU ILE PRO PHE GLN SEQRES 37 B 692 VAL ASN LYS ALA ARG MET ILE GLU LYS ILE ALA GLU LEU SEQRES 38 B 692 VAL ARG ASP LYS LYS ILE ASP GLY ILE THR ASP LEU ARG SEQRES 39 B 692 ASP GLU THR SER LEU ARG THR GLY VAL ARG VAL VAL ILE SEQRES 40 B 692 ASP VAL ARG LYS ASP ALA ASN ALA SER VAL ILE LEU ASN SEQRES 41 B 692 ASN LEU TYR LYS GLN THR PRO LEU GLN THR SER PHE GLY SEQRES 42 B 692 VAL ASN MET ILE ALA LEU VAL ASN GLY ARG PRO LYS LEU SEQRES 43 B 692 ILE ASN LEU LYS GLU ALA LEU VAL HIS TYR LEU GLU HIS SEQRES 44 B 692 GLN LYS THR VAL VAL ARG ARG ARG THR GLN TYR ASN LEU SEQRES 45 B 692 ARG LYS ALA LYS ASP ARG ALA HIS ILE LEU GLU GLY LEU SEQRES 46 B 692 ARG ILE ALA LEU ASP HIS ILE ASP GLU ILE ILE SER THR SEQRES 47 B 692 ILE ARG GLU SER ASP THR ASP LYS VAL ALA MET GLU SER SEQRES 48 B 692 LEU GLN GLN ARG PHE LYS LEU SER GLU LYS GLN ALA GLN SEQRES 49 B 692 ALA ILE LEU ASP MET ARG LEU ARG ARG LEU THR GLY LEU SEQRES 50 B 692 GLU ARG ASP LYS ILE GLU ALA GLU TYR ASN GLU LEU LEU SEQRES 51 B 692 ASN TYR ILE SER GLU LEU GLU THR ILE LEU ALA ASP GLU SEQRES 52 B 692 GLU VAL LEU LEU GLN LEU VAL ARG ASP GLU LEU THR GLU SEQRES 53 B 692 ILE ARG ASP ARG PHE GLY ASP ASP ARG ARG THR GLU ILE SEQRES 54 B 692 GLN LEU GLY SEQRES 1 C 20 DA DG DC DC DG DT DA DG DG DG DC DC DC SEQRES 2 C 20 DT DA DC DG DG DC DT SEQRES 1 D 20 DA DG DC DC DG DT DA DG DG DG DC DC DC SEQRES 2 D 20 DT DA DC DG DG DC DT HET MN A1501 1 HET CL A1502 1 HET MN B1501 1 HET MN B1502 1 HET CL B1503 1 HET CL B1504 1 HET 6I0 D 101 31 HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM 6I0 6-{(5R)-5-[2-({[(2R)-4-CHLORO-2,3-DIHYDRO-1H-INDEN-2- HETNAM 2 6I0 YL]METHYL}AMINO)ETHYL]-2-OXO-1,3-OXAZOLIDIN-3-YL}-2H- HETNAM 3 6I0 PYRIDO[3,2-B][1,4]OXAZIN-3(4H)-ONE FORMUL 5 MN 3(MN 2+) FORMUL 6 CL 3(CL 1-) FORMUL 11 6I0 C22 H23 CL N4 O4 FORMUL 12 HOH *545(H2 O) HELIX 1 AA1 SER A 425 GLU A 428 5 4 HELIX 2 AA2 GLY A 436 ARG A 447 1 12 HELIX 3 AA3 ARG A 468 ASN A 475 1 8 HELIX 4 AA4 ASN A 475 GLY A 486 1 12 HELIX 5 AA5 ILE A 489 PHE A 493 5 5 HELIX 6 AA6 ASP A 494 ALA A 498 5 5 HELIX 7 AA7 ASP A 510 MET A 528 1 19 HELIX 8 AA8 MET A 528 ALA A 534 1 7 HELIX 9 AA9 GLY A 582 MET A 586 5 5 HELIX 10 AB1 ASN A 587 MET A 596 1 10 HELIX 11 AB2 ASP A 610 GLY A 623 1 14 HELIX 12 AB3 VAL A 625 ALA A 637 1 13 HELIX 13 AB4 ILE A 1014 ARG A 1033 1 20 HELIX 14 AB5 LYS A 1043 GLN A 1056 1 14 HELIX 15 AB6 SER A 1067 TYR A 1078 1 12 HELIX 16 AB7 GLY A 1082 MET A 1093 1 12 HELIX 17 AB8 THR A 1129 ARG A 1137 1 9 HELIX 18 AB9 PRO A 1165 GLY A 1171 1 7 HELIX 19 AC1 ASN A 1187 LYS A 1200 1 14 HELIX 20 AC2 SER A 1205 ILE A 1213 1 9 HELIX 21 AC3 LYS A 1227 GLY A 1237 1 11 HELIX 22 AC4 ASN A 1269 ASP A 1283 1 15 HELIX 23 AC5 ASN A 1313 THR A 1325 1 13 HELIX 24 AC6 ASN A 1347 HIS A 1390 1 44 HELIX 25 AC7 HIS A 1390 GLU A 1400 1 11 HELIX 26 AC8 THR A 1403 LYS A 1416 1 14 HELIX 27 AC9 SER A 1418 MET A 1428 1 11 HELIX 28 AD1 ARG A 1429 LEU A 1433 5 5 HELIX 29 AD2 THR A 1434 ALA A 1460 1 27 HELIX 30 AD3 ASP A 1461 GLY A 1481 1 21 HELIX 31 AD4 SER B 425 GLU B 428 5 4 HELIX 32 AD5 GLY B 436 ARG B 447 1 12 HELIX 33 AD6 ARG B 468 ASN B 474 1 7 HELIX 34 AD7 ASN B 475 GLY B 486 1 12 HELIX 35 AD8 ILE B 489 PHE B 493 5 5 HELIX 36 AD9 ASP B 494 ALA B 498 5 5 HELIX 37 AE1 ASP B 510 MET B 528 1 19 HELIX 38 AE2 MET B 528 ALA B 534 1 7 HELIX 39 AE3 GLY B 582 MET B 586 5 5 HELIX 40 AE4 ASN B 587 MET B 596 1 10 HELIX 41 AE5 ASP B 610 GLY B 623 1 14 HELIX 42 AE6 VAL B 625 ALA B 637 1 13 HELIX 43 AE7 ILE B 1014 ARG B 1033 1 20 HELIX 44 AE8 LYS B 1043 GLN B 1056 1 14 HELIX 45 AE9 SER B 1067 TYR B 1078 1 12 HELIX 46 AF1 GLY B 1082 ALA B 1094 1 13 HELIX 47 AF2 THR B 1129 ARG B 1137 1 9 HELIX 48 AF3 PRO B 1165 GLY B 1171 1 7 HELIX 49 AF4 ASN B 1187 LYS B 1200 1 14 HELIX 50 AF5 SER B 1205 ILE B 1213 1 9 HELIX 51 AF6 LYS B 1227 GLY B 1237 1 11 HELIX 52 AF7 ASN B 1269 ASP B 1283 1 15 HELIX 53 AF8 ASN B 1313 THR B 1325 1 13 HELIX 54 AF9 ASN B 1347 HIS B 1390 1 44 HELIX 55 AG1 HIS B 1390 GLU B 1400 1 11 HELIX 56 AG2 THR B 1403 LYS B 1416 1 14 HELIX 57 AG3 SER B 1418 MET B 1428 1 11 HELIX 58 AG4 ARG B 1429 THR B 1434 5 6 HELIX 59 AG5 LEU B 1436 ASP B 1461 1 26 HELIX 60 AG6 ASP B 1461 GLY B 1481 1 21 SHEET 1 AA1 6 GLN A 452 PRO A 456 0 SHEET 2 AA1 6 GLU A 430 VAL A 434 1 N GLU A 430 O ALA A 453 SHEET 3 AA1 6 LYS A 502 ILE A 505 1 O VAL A 504 N LEU A 433 SHEET 4 AA1 6 VAL A 537 ILE A 539 1 O TYR A 538 N ILE A 503 SHEET 5 AA1 6 LEU A 604 LYS A 607 -1 O VAL A 606 N VAL A 537 SHEET 6 AA1 6 GLU A1011 ASN A1013 1 O ARG A1012 N LYS A 607 SHEET 1 AA2 3 LYS A1065 LYS A1066 0 SHEET 2 AA2 3 GLU A1125 MET A1128 -1 O ALA A1126 N LYS A1065 SHEET 3 AA2 3 VAL A1104 GLN A1107 -1 N GLN A1107 O GLU A1125 SHEET 1 AA3 2 PHE A1146 ASP A1148 0 SHEET 2 AA3 2 ARG A1155 PRO A1157 -1 O GLU A1156 N ILE A1147 SHEET 1 AA4 2 ALA A1172 ILE A1175 0 SHEET 2 AA4 2 ALA A1180 ILE A1183 -1 O ILE A1183 N ALA A1172 SHEET 1 AA5 4 GLN A1328 ASN A1334 0 SHEET 2 AA5 4 ARG A1238 ARG A1244 -1 N GLY A1239 O VAL A1333 SHEET 3 AA5 4 LEU A1223 LEU A1225 -1 N LEU A1223 O ARG A1244 SHEET 4 AA5 4 GLU A1487 GLN A1489 1 O GLN A1489 N ILE A1224 SHEET 1 AA6 4 ARG A1246 GLY A1253 0 SHEET 2 AA6 4 ARG A1256 GLU A1263 -1 O VAL A1260 N VAL A1248 SHEET 3 AA6 4 VAL A1304 VAL A1308 -1 O ILE A1306 N ILE A1259 SHEET 4 AA6 4 ILE A1289 ASP A1294 -1 N ARG A1293 O VAL A1305 SHEET 1 AA7 2 ILE A1336 VAL A1339 0 SHEET 2 AA7 2 ARG A1342 LEU A1345 -1 O ARG A1342 N VAL A1339 SHEET 1 AA8 6 GLN B 452 PRO B 456 0 SHEET 2 AA8 6 GLU B 430 VAL B 434 1 N GLU B 430 O ALA B 453 SHEET 3 AA8 6 LYS B 502 ILE B 505 1 O VAL B 504 N LEU B 433 SHEET 4 AA8 6 VAL B 537 ILE B 539 1 O TYR B 538 N ILE B 503 SHEET 5 AA8 6 LEU B 604 LYS B 607 -1 O LEU B 604 N ILE B 539 SHEET 6 AA8 6 GLU B1011 ASN B1013 1 O ARG B1012 N LYS B 607 SHEET 1 AA9 3 LYS B1065 LYS B1066 0 SHEET 2 AA9 3 GLU B1125 MET B1128 -1 O ALA B1126 N LYS B1065 SHEET 3 AA9 3 VAL B1104 GLN B1107 -1 N ASP B1105 O ARG B1127 SHEET 1 AB1 2 PHE B1146 ASP B1148 0 SHEET 2 AB1 2 ARG B1155 PRO B1157 -1 O GLU B1156 N ILE B1147 SHEET 1 AB2 2 ALA B1172 ILE B1175 0 SHEET 2 AB2 2 ALA B1180 ILE B1183 -1 O ILE B1183 N ALA B1172 SHEET 1 AB3 4 GLN B1328 ASN B1334 0 SHEET 2 AB3 4 ARG B1238 ARG B1244 -1 N GLY B1239 O VAL B1333 SHEET 3 AB3 4 LEU B1223 LEU B1225 -1 N LEU B1223 O ARG B1244 SHEET 4 AB3 4 GLU B1487 GLN B1489 1 O GLN B1489 N ILE B1224 SHEET 1 AB4 4 ARG B1246 GLY B1253 0 SHEET 2 AB4 4 ARG B1256 GLU B1263 -1 O VAL B1260 N VAL B1248 SHEET 3 AB4 4 VAL B1304 VAL B1308 -1 O VAL B1304 N VAL B1261 SHEET 4 AB4 4 ILE B1289 ASP B1294 -1 N ASP B1291 O ASP B1307 SHEET 1 AB5 2 ILE B1336 VAL B1339 0 SHEET 2 AB5 2 ARG B1342 LEU B1345 -1 O ARG B1342 N VAL B1339 LINK OE2 GLU A 435 MN MN A1501 1555 1555 2.15 LINK OD2 ASP A 508 MN MN A1501 1555 1555 2.13 LINK MN MN A1501 O HOH A1620 1555 1555 2.23 LINK MN MN A1501 O HOH A1645 1555 1555 2.39 LINK MN MN A1501 O3' DG D 8 1555 1555 2.75 LINK MN MN A1501 OP1 DG D 9 1555 1555 2.36 LINK OE2 GLU B 435 MN MN B1501 1555 1555 2.13 LINK OD2 ASP B 508 MN MN B1501 1555 1555 2.11 LINK O TYR B1322 MN MN B1502 1555 1555 2.23 LINK O THR B1325 MN MN B1502 1555 1555 2.28 LINK O GLN B1328 MN MN B1502 1555 1555 2.28 LINK MN MN B1501 O HOH B1634 1555 1555 2.30 LINK MN MN B1501 O HOH B1713 1555 1555 2.27 LINK MN MN B1501 O3' DG C 8 1555 1555 2.79 LINK MN MN B1501 OP1 DG C 9 1555 1555 2.33 LINK MN MN B1502 O HOH B1799 1555 1555 2.56 LINK MN MN B1502 O HOH B1801 1555 1555 2.40 CRYST1 92.938 92.938 407.651 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010760 0.006212 0.000000 0.00000 SCALE2 0.000000 0.012424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002453 0.00000