HEADER HYDROLASE 05-JUN-23 7G4I TITLE CRYSTAL STRUCTURE OF RAT AUTOTAXIN IN COMPLEX WITH 1H-BENZOTRIAZOL-5- TITLE 2 YL-[RAC-(3AR,6AS)-5-[2-(3,5-DICHLOROPHENYL)ETHYLSULFONYL]-3,3A,4,5,6, TITLE 3 6A-HEXAHYDRO-1H-CYCLOPENTA[C]PYRROL-2-YL]METHANONE, I.E. SMILES TITLE 4 C1(CCC2C(C1)N=NN2)C(=O)N1C[C@@H]2[C@H](C1)C[C@H](C2)S(=O)(=O) TITLE 5 CCC1CC(CC(C1)CL)CL WITH IC50=0.129444 MICROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF ECTONUCLEOTIDE COMPND 3 PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 1-862; COMPND 6 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 7 EC: 3.1.4.39; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: ENPP2, ATX, NPPS2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HEK 293-F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1(-)_NEO_RATX(1-862_N53A:N410A) KEYWDS HYDROLASE, LYSOPHOSPHATIDIC ACID, LPA, LYSOPHOSPHATIDYLCHOLINE, LPC, KEYWDS 2 SOMATOMEDIN, METASTASIS, NEUROPATHIC PAIN, VASCULAR DEVELOPMENT, KEYWDS 3 NEURAL DEVELOPMENT EXPDTA X-RAY DIFFRACTION AUTHOR M.STIHLE,J.BENZ,D.HUNZIKER,G.TANG,M.G.RUDOLPH REVDAT 1 18-DEC-24 7G4I 0 JRNL AUTH D.HUNZIKER,S.C.JOACHIM,C.ULLMER,M.G.RUDOLPH JRNL TITL CRYSTAL STRUCTURE OF A RAT AUTOTAXIN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 26846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1790 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.4310 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.5370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 152 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.00000 REMARK 3 B22 (A**2) : 2.71000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.075 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6831 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9288 ; 1.432 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 805 ; 6.199 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 323 ;33.828 ;23.313 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1118 ;16.422 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.652 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 988 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5223 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: UNIDENTIFIED DENSITY IN SECONDARY REMARK 3 BINDING SITE REMARK 4 REMARK 4 7G4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1001405723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999970 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 46.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.581 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.3 MG/ML PROTEIN IN 20MM BICINE/NAOH REMARK 280 PH8.5, 150MM NACL, 0.02% NAN3 MIXED 50-70% WITH 50-30% RESERVOIR REMARK 280 CONSISTING OF 11-17% PEG3350, 0.1M NA-ACETATE PH4.5, 0.2M CA- REMARK 280 ACETATE, TOTAL VOLUME 200NL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.45350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.68150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.54550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.68150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.45350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.54550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 28 REMARK 465 THR A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 ARG A 32 REMARK 465 ILE A 33 REMARK 465 LYS A 34 REMARK 465 ARG A 35 REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 TRP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 PRO A 464 REMARK 465 SER A 465 REMARK 465 GLY A 466 REMARK 465 LYS A 467 REMARK 465 PRO A 574 REMARK 465 LYS A 575 REMARK 465 ARG A 865 REMARK 465 HIS A 866 REMARK 465 HIS A 867 REMARK 465 HIS A 868 REMARK 465 HIS A 869 REMARK 465 HIS A 870 REMARK 465 HIS A 871 REMARK 465 HIS A 872 REMARK 465 HIS A 873 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 463 CG CD CE NZ REMARK 470 GLU A 573 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 62 108.40 -58.37 REMARK 500 PRO A 70 156.83 -41.40 REMARK 500 PRO A 71 38.31 -96.77 REMARK 500 ASN A 77 6.47 -64.36 REMARK 500 GLU A 109 172.88 -34.80 REMARK 500 GLU A 113 -8.17 -59.12 REMARK 500 LYS A 248 -9.00 -58.09 REMARK 500 HIS A 359 178.33 179.52 REMARK 500 ARG A 368 52.01 -94.47 REMARK 500 CYS A 413 36.93 39.35 REMARK 500 GLN A 418 128.97 -32.20 REMARK 500 ALA A 435 -29.12 -153.16 REMARK 500 ARG A 450 -0.02 92.30 REMARK 500 ARG A 455 -75.54 -75.78 REMARK 500 ASP A 477 132.50 -20.45 REMARK 500 ILE A 506 -11.44 -48.69 REMARK 500 ASP A 570 23.41 -140.13 REMARK 500 GLU A 579 35.10 -96.54 REMARK 500 SER A 676 -158.06 -124.34 REMARK 500 ASN A 728 59.34 70.52 REMARK 500 TRP A 814 -18.29 -145.96 REMARK 500 SER A 860 -168.69 -71.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 THR A 209 OG1 131.2 REMARK 620 3 ASP A 358 OD2 96.1 117.8 REMARK 620 4 HIS A 359 NE2 100.8 105.6 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 904 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD1 REMARK 620 2 ASP A 311 OD2 56.0 REMARK 620 3 HIS A 315 NE2 93.1 95.3 REMARK 620 4 HIS A 474 NE2 147.7 92.2 95.6 REMARK 620 5 Y2Q A 902 N07 107.4 147.1 115.1 96.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 739 OD1 REMARK 620 2 ASN A 741 OD1 77.1 REMARK 620 3 ASP A 743 OD1 82.4 96.4 REMARK 620 4 ASP A 743 OD2 115.1 75.5 44.8 REMARK 620 5 LEU A 745 O 83.3 160.3 82.5 115.2 REMARK 620 6 ASP A 747 OD1 87.8 86.4 168.8 145.9 91.2 REMARK 620 N 1 2 3 4 5 DBREF 7G4I A 28 862 UNP Q64610 ENPP2_RAT 28 862 SEQADV 7G4I ALA A 53 UNP Q64610 ASN 53 ENGINEERED MUTATION SEQADV 7G4I ALA A 410 UNP Q64610 ASN 410 ENGINEERED MUTATION SEQADV 7G4I THR A 591 UNP Q64610 ARG 591 ENGINEERED MUTATION SEQADV 7G4I GLY A 863 UNP Q64610 EXPRESSION TAG SEQADV 7G4I GLY A 864 UNP Q64610 EXPRESSION TAG SEQADV 7G4I ARG A 865 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 866 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 867 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 868 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 869 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 870 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 871 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 872 UNP Q64610 EXPRESSION TAG SEQADV 7G4I HIS A 873 UNP Q64610 EXPRESSION TAG SEQRES 1 A 846 PHE THR ALA SER ARG ILE LYS ARG ALA GLU TRP ASP GLU SEQRES 2 A 846 GLY PRO PRO THR VAL LEU SER ASP SER PRO TRP THR ALA SEQRES 3 A 846 THR SER GLY SER CYS LYS GLY ARG CYS PHE GLU LEU GLN SEQRES 4 A 846 GLU VAL GLY PRO PRO ASP CYS ARG CYS ASP ASN LEU CYS SEQRES 5 A 846 LYS SER TYR SER SER CYS CYS HIS ASP PHE ASP GLU LEU SEQRES 6 A 846 CYS LEU LYS THR ALA ARG GLY TRP GLU CYS THR LYS ASP SEQRES 7 A 846 ARG CYS GLY GLU VAL ARG ASN GLU GLU ASN ALA CYS HIS SEQRES 8 A 846 CYS SER GLU ASP CYS LEU SER ARG GLY ASP CYS CYS THR SEQRES 9 A 846 ASN TYR GLN VAL VAL CYS LYS GLY GLU SER HIS TRP VAL SEQRES 10 A 846 ASP ASP ASP CYS GLU GLU ILE LYS VAL PRO GLU CYS PRO SEQRES 11 A 846 ALA GLY PHE VAL ARG PRO PRO LEU ILE ILE PHE SER VAL SEQRES 12 A 846 ASP GLY PHE ARG ALA SER TYR MET LYS LYS GLY SER LYS SEQRES 13 A 846 VAL MET PRO ASN ILE GLU LYS LEU ARG SER CYS GLY THR SEQRES 14 A 846 HIS ALA PRO TYR MET ARG PRO VAL TYR PRO THR LYS THR SEQRES 15 A 846 PHE PRO ASN LEU TYR THR LEU ALA THR GLY LEU TYR PRO SEQRES 16 A 846 GLU SER HIS GLY ILE VAL GLY ASN SER MET TYR ASP PRO SEQRES 17 A 846 VAL PHE ASP ALA SER PHE HIS LEU ARG GLY ARG GLU LYS SEQRES 18 A 846 PHE ASN HIS ARG TRP TRP GLY GLY GLN PRO LEU TRP ILE SEQRES 19 A 846 THR ALA THR LYS GLN GLY VAL ARG ALA GLY THR PHE PHE SEQRES 20 A 846 TRP SER VAL SER ILE PRO HIS GLU ARG ARG ILE LEU THR SEQRES 21 A 846 ILE LEU GLN TRP LEU SER LEU PRO ASP ASN GLU ARG PRO SEQRES 22 A 846 SER VAL TYR ALA PHE TYR SER GLU GLN PRO ASP PHE SER SEQRES 23 A 846 GLY HIS LYS TYR GLY PRO PHE GLY PRO GLU MET THR ASN SEQRES 24 A 846 PRO LEU ARG GLU ILE ASP LYS THR VAL GLY GLN LEU MET SEQRES 25 A 846 ASP GLY LEU LYS GLN LEU ARG LEU HIS ARG CYS VAL ASN SEQRES 26 A 846 VAL ILE PHE VAL GLY ASP HIS GLY MET GLU ASP VAL THR SEQRES 27 A 846 CYS ASP ARG THR GLU PHE LEU SER ASN TYR LEU THR ASN SEQRES 28 A 846 VAL ASP ASP ILE THR LEU VAL PRO GLY THR LEU GLY ARG SEQRES 29 A 846 ILE ARG ALA LYS SER ILE ASN ASN SER LYS TYR ASP PRO SEQRES 30 A 846 LYS THR ILE ILE ALA ALA LEU THR CYS LYS LYS PRO ASP SEQRES 31 A 846 GLN HIS PHE LYS PRO TYR MET LYS GLN HIS LEU PRO LYS SEQRES 32 A 846 ARG LEU HIS TYR ALA ASN ASN ARG ARG ILE GLU ASP ILE SEQRES 33 A 846 HIS LEU LEU VAL ASP ARG ARG TRP HIS VAL ALA ARG LYS SEQRES 34 A 846 PRO LEU ASP VAL TYR LYS LYS PRO SER GLY LYS CYS PHE SEQRES 35 A 846 PHE GLN GLY ASP HIS GLY PHE ASP ASN LYS VAL ASN SER SEQRES 36 A 846 MET GLN THR VAL PHE VAL GLY TYR GLY PRO THR PHE LYS SEQRES 37 A 846 TYR ARG THR LYS VAL PRO PRO PHE GLU ASN ILE GLU LEU SEQRES 38 A 846 TYR ASN VAL MET CYS ASP LEU LEU GLY LEU LYS PRO ALA SEQRES 39 A 846 PRO ASN ASN GLY THR HIS GLY SER LEU ASN HIS LEU LEU SEQRES 40 A 846 ARG THR ASN THR PHE ARG PRO THR MET PRO ASP GLU VAL SEQRES 41 A 846 SER ARG PRO ASN TYR PRO GLY ILE MET TYR LEU GLN SER SEQRES 42 A 846 GLU PHE ASP LEU GLY CYS THR CYS ASP ASP LYS VAL GLU SEQRES 43 A 846 PRO LYS ASN LYS LEU GLU GLU LEU ASN LYS ARG LEU HIS SEQRES 44 A 846 THR LYS GLY SER THR LYS GLU ARG HIS LEU LEU TYR GLY SEQRES 45 A 846 ARG PRO ALA VAL LEU TYR ARG THR SER TYR ASP ILE LEU SEQRES 46 A 846 TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU ILE PHE SEQRES 47 A 846 LEU MET PRO LEU TRP THR SER TYR THR ILE SER LYS GLN SEQRES 48 A 846 ALA GLU VAL SER SER ILE PRO GLU HIS LEU THR ASN CYS SEQRES 49 A 846 VAL ARG PRO ASP VAL ARG VAL SER PRO GLY PHE SER GLN SEQRES 50 A 846 ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SER TYR SEQRES 51 A 846 GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER PRO GLU SEQRES 52 A 846 ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET VAL PRO SEQRES 53 A 846 MET TYR PRO ALA PHE LYS ARG VAL TRP ALA TYR PHE GLN SEQRES 54 A 846 ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG ASN GLY SEQRES 55 A 846 VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR ASN TYR SEQRES 56 A 846 ASP GLY LEU ARG ASP THR GLU ASP GLU ILE LYS GLN TYR SEQRES 57 A 846 VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS TYR TYR SEQRES 58 A 846 SER ILE ILE THR SER CYS LEU ASP PHE THR GLN PRO ALA SEQRES 59 A 846 ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER PHE ILE SEQRES 60 A 846 LEU PRO HIS ARG PRO ASP ASN ASP GLU SER CYS ASN SER SEQRES 61 A 846 SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU MET LYS SEQRES 62 A 846 MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS LEU THR SEQRES 63 A 846 GLY LEU ASP PHE TYR ARG LYS THR SER ARG SER TYR SER SEQRES 64 A 846 GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR TYR GLU SEQRES 65 A 846 SER GLU ILE GLY GLY ARG HIS HIS HIS HIS HIS HIS HIS SEQRES 66 A 846 HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET ZN A 901 1 HET Y2Q A 902 32 HET SO4 A 903 5 HET ZN A 904 1 HET CA A 905 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM Y2Q (1H-BENZOTRIAZOL-5-YL)[(3AR,5R,6AS)-5-[2-(3,5- HETNAM 2 Y2Q DICHLOROPHENYL) HETNAM 3 Y2Q ETHANESULFONYL]HEXAHYDROCYCLOPENTA[C]PYRROL-2(1H)- HETNAM 4 Y2Q YL]METHANONE HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 3(C6 H12 O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 Y2Q C22 H22 CL2 N4 O3 S FORMUL 5 SO4 O4 S 2- FORMUL 7 CA CA 2+ FORMUL 8 HOH *152(H2 O) HELIX 1 AA1 CYS A 79 SER A 83 5 5 HELIX 2 AA2 ASP A 88 LEU A 94 1 7 HELIX 3 AA3 THR A 103 CYS A 107 5 5 HELIX 4 AA4 ASP A 122 GLY A 127 1 6 HELIX 5 AA5 ASN A 132 GLY A 139 1 8 HELIX 6 AA6 HIS A 142 ASP A 146 5 5 HELIX 7 AA7 SER A 176 GLY A 181 1 6 HELIX 8 AA8 SER A 182 VAL A 184 5 3 HELIX 9 AA9 MET A 185 GLY A 195 1 11 HELIX 10 AB1 LYS A 208 GLY A 219 1 12 HELIX 11 AB2 TYR A 221 GLY A 226 1 6 HELIX 12 AB3 ARG A 246 ASN A 250 5 5 HELIX 13 AB4 PRO A 258 LYS A 265 1 8 HELIX 14 AB5 PRO A 280 LEU A 294 1 15 HELIX 15 AB6 ASP A 311 GLY A 318 1 8 HELIX 16 AB7 GLY A 321 GLU A 323 5 3 HELIX 17 AB8 MET A 324 LEU A 345 1 22 HELIX 18 AB9 SER A 373 TYR A 375 5 3 HELIX 19 AC1 ASP A 403 LEU A 411 1 9 HELIX 20 AC2 GLN A 426 LEU A 428 5 3 HELIX 21 AC3 PRO A 429 HIS A 433 5 5 HELIX 22 AC4 PRO A 457 LYS A 462 1 6 HELIX 23 AC5 VAL A 480 GLN A 484 5 5 HELIX 24 AC6 GLU A 507 LEU A 516 1 10 HELIX 25 AC7 LEU A 530 LEU A 534 5 5 HELIX 26 AC8 LEU A 558 PHE A 562 5 5 HELIX 27 AC9 LYS A 577 GLY A 589 1 13 HELIX 28 AD1 THR A 591 LEU A 596 1 6 HELIX 29 AD2 PRO A 645 THR A 649 5 5 HELIX 30 AD3 SER A 659 SER A 663 5 5 HELIX 31 AD4 ASN A 665 ASP A 672 1 8 HELIX 32 AD5 PRO A 682 SER A 686 5 5 HELIX 33 AD6 GLU A 690 LEU A 697 5 8 HELIX 34 AD7 TYR A 705 VAL A 718 1 14 HELIX 35 AD8 VAL A 718 ASN A 728 1 11 HELIX 36 AD9 THR A 748 ILE A 752 5 5 HELIX 37 AE1 PRO A 780 CYS A 784 5 5 HELIX 38 AE2 ASP A 810 LYS A 813 5 4 HELIX 39 AE3 TRP A 814 HIS A 822 1 9 HELIX 40 AE4 ARG A 825 GLY A 834 1 10 HELIX 41 AE5 SER A 844 TYR A 854 1 11 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N ILE A 167 O PHE A 305 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N ILE A 166 SHEET 4 AA1 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 6 VAL A 302 PRO A 310 0 SHEET 2 AA2 6 LEU A 165 ASP A 171 1 N ILE A 167 O PHE A 305 SHEET 3 AA2 6 ASN A 352 GLY A 357 1 O ILE A 354 N ILE A 166 SHEET 4 AA2 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA2 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA2 6 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O PHE A 241 N MET A 232 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O HIS A 452 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 ALA A 394 -1 O ARG A 391 N VAL A 385 SHEET 3 AA6 4 ILE A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 602 VAL A 603 0 SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602 SHEET 1 AA8 6 TYR A 609 TYR A 613 0 SHEET 2 AA8 6 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610 SHEET 3 AA8 6 PRO A 628 ILE A 635 -1 O LEU A 629 N GLY A 620 SHEET 4 AA8 6 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633 SHEET 5 AA8 6 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731 SHEET 6 AA8 6 LEU A 788 PRO A 796 -1 O LEU A 795 N TYR A 767 SHEET 1 AA9 2 SER A 676 PHE A 679 0 SHEET 2 AA9 2 MET A 701 MET A 704 -1 O VAL A 702 N GLY A 678 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.02 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.07 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.04 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.06 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.02 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.04 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.03 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.03 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.04 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.05 SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.04 SSBOND 12 CYS A 413 CYS A 805 1555 1555 2.03 SSBOND 13 CYS A 566 CYS A 666 1555 1555 2.05 SSBOND 14 CYS A 568 CYS A 651 1555 1555 2.05 SSBOND 15 CYS A 774 CYS A 784 1555 1555 2.04 LINK ND2 ASN A 524 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.46 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.44 LINK OD1 ASP A 171 ZN ZN A 901 1555 1555 1.84 LINK OG1 THR A 209 ZN ZN A 901 1555 1555 1.99 LINK OD1 ASP A 311 ZN ZN A 904 1555 1555 2.62 LINK OD2 ASP A 311 ZN ZN A 904 1555 1555 1.79 LINK NE2 HIS A 315 ZN ZN A 904 1555 1555 2.05 LINK OD2 ASP A 358 ZN ZN A 901 1555 1555 1.99 LINK NE2 HIS A 359 ZN ZN A 901 1555 1555 2.16 LINK NE2 HIS A 474 ZN ZN A 904 1555 1555 2.14 LINK OD1 ASP A 739 CA CA A 905 1555 1555 2.40 LINK OD1 ASN A 741 CA CA A 905 1555 1555 2.23 LINK OD1 ASP A 743 CA CA A 905 1555 1555 2.35 LINK OD2 ASP A 743 CA CA A 905 1555 1555 3.10 LINK O LEU A 745 CA CA A 905 1555 1555 2.39 LINK OD1 ASP A 747 CA CA A 905 1555 1555 2.34 LINK N07 Y2Q A 902 ZN ZN A 904 1555 1555 1.73 CISPEP 1 PRO A 70 PRO A 71 0 -6.32 CISPEP 2 TYR A 205 PRO A 206 0 -6.64 CISPEP 3 GLN A 309 PRO A 310 0 2.08 CRYST1 84.907 93.091 121.363 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008240 0.00000