HEADER HYDROLASE 19-OCT-23 7GQS TITLE CRYSTAL STRUCTURE OF WERNER HELICASE FRAGMENT 517-945 IN COMPLEX WITH TITLE 2 ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL 3'-5' EXONUCLEASE/ATP-DEPENDENT HELICASE WRN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WRN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1_HWRN(517-945)_C-H3CV-GFP-10HIS KEYWDS HYDROLASE, DNA HELICASE, WERNER SYNDROME, RECQ PROTEIN-LIKE 2, ATP- KEYWDS 2 DEPENDENT HELICASE, BIFUNCTIONAL 3'-5' EXONUCLEASE/ATP-DEPENDENT KEYWDS 3 HELICASE, WRN WERNER SYNDROME PROTEIN, RECQ-LIKE TYPE 3 EXPDTA X-RAY DIFFRACTION AUTHOR M.CLASSEN,J.BENZ,D.BRUGGER,M.G.RUDOLPH REVDAT 3 29-MAY-24 7GQS 1 JRNL REVDAT 2 08-MAY-24 7GQS 1 JRNL REVDAT 1 01-MAY-24 7GQS 0 JRNL AUTH K.A.BALTGALVIS,K.N.LAMB,K.T.SYMONS,C.C.WU,M.A.HOFFMAN, JRNL AUTH 2 A.N.SNEAD,X.SONG,T.GLAZA,S.KIKUCHI,J.C.GREEN,D.C.ROGNESS, JRNL AUTH 3 B.LAM,M.E.RODRIGUEZ-AGUIRRE,D.R.WOODY,C.L.EISSLER,S.RODILES, JRNL AUTH 4 S.M.NEGRON,S.M.BERNARD,E.TRAN,J.POLLOCK,A.TABATABAEI, JRNL AUTH 5 V.CONTRERAS,H.N.WILLIAMS,M.K.PASTUSZKA,J.J.SIGLER, JRNL AUTH 6 P.PETTAZZONI,M.G.RUDOLPH,M.CLASSEN,D.BRUGGER,C.CLAIBORNE, JRNL AUTH 7 J.M.PLANCHER,I.CUARTAS,J.SEOANE,L.E.BURGESS,R.T.ABRAHAM, JRNL AUTH 8 D.S.WEINSTEIN,G.M.SIMON,M.P.PATRICELLI,T.M.KINSELLA JRNL TITL CHEMOPROTEOMIC DISCOVERY OF A COVALENT ALLOSTERIC INHIBITOR JRNL TITL 2 OF WRN HELICASE. JRNL REF NATURE V. 629 435 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38658751 JRNL DOI 10.1038/S41586-024-07318-Y REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_4357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.1 REMARK 3 NUMBER OF REFLECTIONS : 41908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8900 - 3.8800 1.00 4145 209 0.1429 0.1769 REMARK 3 2 3.8800 - 3.0800 1.00 4079 226 0.1605 0.2098 REMARK 3 3 3.0800 - 2.6900 0.99 4033 209 0.1834 0.2188 REMARK 3 4 2.6900 - 2.4500 0.98 4006 213 0.1835 0.2188 REMARK 3 5 2.4500 - 2.2700 0.96 3900 228 0.1831 0.2366 REMARK 3 6 2.2700 - 2.1400 0.92 3744 172 0.1908 0.2452 REMARK 3 7 2.1400 - 2.0300 0.84 3421 201 0.2006 0.2896 REMARK 3 8 2.0300 - 1.9400 0.72 2928 164 0.2087 0.2567 REMARK 3 9 1.9400 - 1.8700 0.59 2408 127 0.2337 0.2483 REMARK 3 10 1.8700 - 1.8000 0.51 2087 105 0.2385 0.2885 REMARK 3 11 1.8000 - 1.7500 0.42 1724 92 0.2505 0.2658 REMARK 3 12 1.7500 - 1.7000 0.34 1370 65 0.2538 0.2677 REMARK 3 13 1.7000 - 1.6500 0.26 1053 53 0.2510 0.2921 REMARK 3 14 1.6500 - 1.6100 0.16 654 38 0.2533 0.2754 REMARK 3 15 1.6100 - 1.5700 0.06 241 13 0.2557 0.1475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 681 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9198 -4.6417 -25.0673 REMARK 3 T TENSOR REMARK 3 T11: 0.2575 T22: 0.1763 REMARK 3 T33: 0.0930 T12: -0.1045 REMARK 3 T13: -0.0347 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 2.6679 L22: 4.6556 REMARK 3 L33: 2.3175 L12: -0.0593 REMARK 3 L13: -0.1147 L23: -0.7704 REMARK 3 S TENSOR REMARK 3 S11: -0.1324 S12: 0.1514 S13: 0.1365 REMARK 3 S21: -0.3609 S22: 0.1892 S23: 0.3410 REMARK 3 S31: 0.0606 S32: -0.3744 S33: -0.0115 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 682 THROUGH 734 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2993 -12.0360 -13.2496 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1553 REMARK 3 T33: 0.1580 T12: -0.0273 REMARK 3 T13: 0.0106 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 3.6881 L22: 3.1216 REMARK 3 L33: 2.2186 L12: 1.6412 REMARK 3 L13: 0.5050 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0658 S13: -0.0731 REMARK 3 S21: 0.0369 S22: 0.1009 S23: 0.4969 REMARK 3 S31: 0.2695 S32: -0.5287 S33: -0.1232 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 735 THROUGH 854 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3402 15.6833 -7.7673 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.1205 REMARK 3 T33: 0.1321 T12: -0.0156 REMARK 3 T13: 0.0322 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.5900 L22: 3.2620 REMARK 3 L33: 3.1621 L12: -0.5191 REMARK 3 L13: 0.2541 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: -0.0083 S13: 0.0981 REMARK 3 S21: -0.1738 S22: -0.0141 S23: -0.0533 REMARK 3 S31: -0.3109 S32: 0.0115 S33: 0.0018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 855 THROUGH 952 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1723 -0.7692 3.7522 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.1770 REMARK 3 T33: 0.1504 T12: -0.0060 REMARK 3 T13: -0.0213 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.0408 L22: 4.5998 REMARK 3 L33: 4.5902 L12: 0.7763 REMARK 3 L13: -0.3459 L23: 0.9220 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: -0.0572 S13: -0.2213 REMARK 3 S21: 0.6235 S22: -0.0235 S23: 0.0546 REMARK 3 S31: 0.6996 S32: -0.2564 S33: -0.0111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ADP, NO MG2+, BUT PARTIAL REPLACEMENT REMARK 3 OF ZINC IONS BY CD2+ FROM HAMPTON SILVER BULLET ADDITIVE REMARK 4 REMARK 4 7GQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1001406521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 48.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.036 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.28 REMARK 200 R MERGE FOR SHELL (I) : 3.74100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN IN 20MM TRIS/HCL REMARK 280 PH7.5, 350MM NACL, 0.25MM TCEP, 2.5% GLYCEROL MIXED 40NL WITH REMARK 280 180NL RESERVOIR CONSISTING OF 9.091 %W/V SILVER BULLETS 42, REMARK 280 0.091 M MES MONOHYDRATE, 2.727 %V/V JEFFAMINE T-403, 13.6 %V/V REMARK 280 PENTAERYTHRITOL ETHOXYLATE, 0.182M POTASSIUM ACETATE PH6, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.03300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 516 REMARK 465 ASN A 517 REMARK 465 GLU A 518 REMARK 465 GLY A 519 REMARK 465 GLU A 520 REMARK 465 GLU A 521 REMARK 465 ASP A 522 REMARK 465 ASP A 523 REMARK 465 ASP A 524 REMARK 465 LYS A 525 REMARK 465 ASP A 526 REMARK 465 PHE A 527 REMARK 465 PHE A 953 REMARK 465 GLN A 954 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 575 O HOH A 1101 2.11 REMARK 500 NH1 ARG A 741 O HOH A 1102 2.13 REMARK 500 NH2 ARG A 564 O HOH A 1103 2.16 REMARK 500 OE1 GLU A 886 NH1 ARG A 889 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 562 NH1 ARG A 809 2544 2.14 REMARK 500 O HOH A 1111 O HOH A 1237 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 590 -161.91 -124.26 REMARK 500 ASN A 649 45.20 -140.28 REMARK 500 HIS A 678 -4.64 67.27 REMARK 500 SER A 759 -1.07 85.23 REMARK 500 HIS A 945 45.56 -95.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 925 SER A 926 148.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1004 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 558 NE2 REMARK 620 2 GLU A 563 OE2 102.2 REMARK 620 3 HIS A 808 NE2 15.8 90.9 REMARK 620 4 GLU A 814 OE1 16.0 88.4 3.9 REMARK 620 5 GLU A 814 OE2 13.3 90.9 4.2 2.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1002 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 727 SG REMARK 620 2 GLU A 918 OE1 116.1 REMARK 620 3 HOH A1302 O 124.5 111.8 REMARK 620 4 HOH A1314 O 102.7 88.7 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1003 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 908 SG REMARK 620 2 CYS A 935 SG 102.2 REMARK 620 3 CYS A 936 SG 116.7 119.3 REMARK 620 4 CYS A 939 SG 104.7 112.7 100.7 REMARK 620 N 1 2 3 DBREF 7GQS A 517 945 UNP Q14191 WRN_HUMAN 517 945 SEQADV 7GQS MET A 516 UNP Q14191 INITIATING METHIONINE SEQADV 7GQS GLY A 946 UNP Q14191 EXPRESSION TAG SEQADV 7GQS GLY A 947 UNP Q14191 EXPRESSION TAG SEQADV 7GQS ARG A 948 UNP Q14191 EXPRESSION TAG SEQADV 7GQS LEU A 949 UNP Q14191 EXPRESSION TAG SEQADV 7GQS GLU A 950 UNP Q14191 EXPRESSION TAG SEQADV 7GQS VAL A 951 UNP Q14191 EXPRESSION TAG SEQADV 7GQS LEU A 952 UNP Q14191 EXPRESSION TAG SEQADV 7GQS PHE A 953 UNP Q14191 EXPRESSION TAG SEQADV 7GQS GLN A 954 UNP Q14191 EXPRESSION TAG SEQRES 1 A 439 MET ASN GLU GLY GLU GLU ASP ASP ASP LYS ASP PHE LEU SEQRES 2 A 439 TRP PRO ALA PRO ASN GLU GLU GLN VAL THR CYS LEU LYS SEQRES 3 A 439 MET TYR PHE GLY HIS SER SER PHE LYS PRO VAL GLN TRP SEQRES 4 A 439 LYS VAL ILE HIS SER VAL LEU GLU GLU ARG ARG ASP ASN SEQRES 5 A 439 VAL ALA VAL MET ALA THR GLY TYR GLY LYS SER LEU CYS SEQRES 6 A 439 PHE GLN TYR PRO PRO VAL TYR VAL GLY LYS ILE GLY LEU SEQRES 7 A 439 VAL ILE SER PRO LEU ILE SER LEU MET GLU ASP GLN VAL SEQRES 8 A 439 LEU GLN LEU LYS MET SER ASN ILE PRO ALA CYS PHE LEU SEQRES 9 A 439 GLY SER ALA GLN SER GLU ASN VAL LEU THR ASP ILE LYS SEQRES 10 A 439 LEU GLY LYS TYR ARG ILE VAL TYR VAL THR PRO GLU TYR SEQRES 11 A 439 CYS SER GLY ASN MET GLY LEU LEU GLN GLN LEU GLU ALA SEQRES 12 A 439 ASP ILE GLY ILE THR LEU ILE ALA VAL ASP GLU ALA HIS SEQRES 13 A 439 CYS ILE SER GLU TRP GLY HIS ASP PHE ARG ASP SER PHE SEQRES 14 A 439 ARG LYS LEU GLY SER LEU LYS THR ALA LEU PRO MET VAL SEQRES 15 A 439 PRO ILE VAL ALA LEU THR ALA THR ALA SER SER SER ILE SEQRES 16 A 439 ARG GLU ASP ILE VAL ARG CYS LEU ASN LEU ARG ASN PRO SEQRES 17 A 439 GLN ILE THR CYS THR GLY PHE ASP ARG PRO ASN LEU TYR SEQRES 18 A 439 LEU GLU VAL ARG ARG LYS THR GLY ASN ILE LEU GLN ASP SEQRES 19 A 439 LEU GLN PRO PHE LEU VAL LYS THR SER SER HIS TRP GLU SEQRES 20 A 439 PHE GLU GLY PRO THR ILE ILE TYR CYS PRO SER ARG LYS SEQRES 21 A 439 MET THR GLN GLN VAL THR GLY GLU LEU ARG LYS LEU ASN SEQRES 22 A 439 LEU SER CYS GLY THR TYR HIS ALA GLY MET SER PHE SER SEQRES 23 A 439 THR ARG LYS ASP ILE HIS HIS ARG PHE VAL ARG ASP GLU SEQRES 24 A 439 ILE GLN CYS VAL ILE ALA THR ILE ALA PHE GLY MET GLY SEQRES 25 A 439 ILE ASN LYS ALA ASP ILE ARG GLN VAL ILE HIS TYR GLY SEQRES 26 A 439 ALA PRO LYS ASP MET GLU SER TYR TYR GLN GLU ILE GLY SEQRES 27 A 439 ARG ALA GLY ARG ASP GLY LEU GLN SER SER CYS HIS VAL SEQRES 28 A 439 LEU TRP ALA PRO ALA ASP ILE ASN LEU ASN ARG HIS LEU SEQRES 29 A 439 LEU THR GLU ILE ARG ASN GLU LYS PHE ARG LEU TYR LYS SEQRES 30 A 439 LEU LYS MET MET ALA LYS MET GLU LYS TYR LEU HIS SER SEQRES 31 A 439 SER ARG CYS ARG ARG GLN ILE ILE LEU SER HIS PHE GLU SEQRES 32 A 439 ASP LYS GLN VAL GLN LYS ALA SER LEU GLY ILE MET GLY SEQRES 33 A 439 THR GLU LYS CYS CYS ASP ASN CYS ARG SER ARG LEU ASP SEQRES 34 A 439 HIS GLY GLY ARG LEU GLU VAL LEU PHE GLN HET ADP A1001 27 HET CD A1002 1 HET CD A1003 1 HET CD A1004 1 HET EDO A1005 4 HET EDO A1006 4 HET CL A1007 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CD CADMIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 CD 3(CD 2+) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 8 CL CL 1- FORMUL 9 HOH *260(H2 O) HELIX 1 AA1 ASN A 533 GLY A 545 1 13 HELIX 2 AA2 LYS A 550 GLU A 562 1 13 HELIX 3 AA3 GLY A 576 GLY A 589 1 14 HELIX 4 AA4 LEU A 598 SER A 612 1 15 HELIX 5 AA5 SER A 624 LEU A 633 1 10 HELIX 6 AA6 THR A 642 GLY A 648 1 7 HELIX 7 AA7 ASN A 649 ILE A 660 1 12 HELIX 8 AA8 GLU A 669 SER A 674 5 6 HELIX 9 AA9 ARG A 681 LYS A 686 1 6 HELIX 10 AB1 GLY A 688 LEU A 694 1 7 HELIX 11 AB2 SER A 707 LEU A 718 1 12 HELIX 12 AB3 ASN A 745 GLN A 751 1 7 HELIX 13 AB4 SER A 773 LYS A 786 1 14 HELIX 14 AB5 SER A 799 ARG A 812 1 14 HELIX 15 AB6 GLY A 825 ASN A 829 5 5 HELIX 16 AB7 ASP A 844 GLY A 853 1 10 HELIX 17 AB8 ASP A 872 LEU A 880 5 9 HELIX 18 AB9 ASN A 885 SER A 905 1 21 HELIX 19 AC1 CYS A 908 ASP A 919 1 12 HELIX 20 AC2 CYS A 936 HIS A 945 1 10 SHEET 1 AA1 7 ALA A 616 PHE A 618 0 SHEET 2 AA1 7 ILE A 638 VAL A 641 1 O TYR A 640 N CYS A 617 SHEET 3 AA1 7 ILE A 591 ILE A 595 1 N VAL A 594 O VAL A 639 SHEET 4 AA1 7 ILE A 662 VAL A 667 1 O ALA A 666 N ILE A 595 SHEET 5 AA1 7 ILE A 699 THR A 703 1 O VAL A 700 N VAL A 667 SHEET 6 AA1 7 ASN A 567 VAL A 570 1 N ASN A 567 O ALA A 701 SHEET 7 AA1 7 GLN A 724 CYS A 727 1 O GLN A 724 N VAL A 568 SHEET 1 AA2 6 LEU A 735 ARG A 741 0 SHEET 2 AA2 6 SER A 862 TRP A 868 1 O CYS A 864 N TYR A 736 SHEET 3 AA2 6 GLN A 835 TYR A 839 1 N HIS A 838 O LEU A 867 SHEET 4 AA2 6 THR A 767 TYR A 770 1 N TYR A 770 O TYR A 839 SHEET 5 AA2 6 CYS A 817 ALA A 820 1 O ALA A 820 N ILE A 769 SHEET 6 AA2 6 CYS A 791 TYR A 794 1 N GLY A 792 O ILE A 819 SHEET 1 AA3 2 LEU A 754 THR A 757 0 SHEET 2 AA3 2 HIS A 760 PHE A 763 -1 O GLU A 762 N VAL A 755 LINK NE2 HIS A 558 CD CD A1004 1555 1555 2.21 LINK OE2 GLU A 563 CD CD A1004 1555 1555 2.24 LINK SG CYS A 727 CD CD A1002 1555 1555 2.62 LINK NE2 HIS A 808 CD CD A1004 1555 2554 2.22 LINK OE1 GLU A 814 CD CD A1004 1555 2554 2.70 LINK OE2 GLU A 814 CD CD A1004 1555 2554 2.17 LINK SG CYS A 908 CD CD A1003 1555 1555 2.52 LINK OE1 GLU A 918 CD CD A1002 1555 1555 2.48 LINK SG CYS A 935 CD CD A1003 1555 1555 2.48 LINK SG CYS A 936 CD CD A1003 1555 1555 2.53 LINK SG CYS A 939 CD CD A1003 1555 1555 2.49 LINK CD CD A1002 O HOH A1302 1555 1555 2.43 LINK CD CD A1002 O HOH A1314 1555 1555 2.57 CRYST1 50.071 90.066 53.788 90.00 102.46 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019972 0.000000 0.004413 0.00000 SCALE2 0.000000 0.011103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019040 0.00000