HEADER HYDROLASE 19-OCT-23 7GQU TITLE CRYSTAL STRUCTURE OF WERNER HELICASE FRAGMENT 517-945 IN COVALENT TITLE 2 COMPLEX WITH N-[(E,1S)-1-CYCLOPROPYL-3-METHYLSULFONYLPROP-2-ENYL]-2- TITLE 3 (1,1-DIFLUOROETHYL)-4-PHENOXYPYRIMIDINE-5-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL 3'-5' EXONUCLEASE/ATP-DEPENDENT HELICASE WRN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WRN; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1_HWRN(517-945)_C-H3CV-GFP-10HIS KEYWDS HELICASE, WERNER SYNDROME, DNA REPAIR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.CLASSEN,J.BENZ,D.BRUGGER,O.TAGLIENTE,M.G.RUDOLPH REVDAT 4 23-OCT-24 7GQU 1 REMARK REVDAT 3 29-MAY-24 7GQU 1 JRNL REVDAT 2 08-MAY-24 7GQU 1 JRNL REVDAT 1 01-MAY-24 7GQU 0 JRNL AUTH K.A.BALTGALVIS,K.N.LAMB,K.T.SYMONS,C.C.WU,M.A.HOFFMAN, JRNL AUTH 2 A.N.SNEAD,X.SONG,T.GLAZA,S.KIKUCHI,J.C.GREEN,D.C.ROGNESS, JRNL AUTH 3 B.LAM,M.E.RODRIGUEZ-AGUIRRE,D.R.WOODY,C.L.EISSLER,S.RODILES, JRNL AUTH 4 S.M.NEGRON,S.M.BERNARD,E.TRAN,J.POLLOCK,A.TABATABAEI, JRNL AUTH 5 V.CONTRERAS,H.N.WILLIAMS,M.K.PASTUSZKA,J.J.SIGLER, JRNL AUTH 6 P.PETTAZZONI,M.G.RUDOLPH,M.CLASSEN,D.BRUGGER,C.CLAIBORNE, JRNL AUTH 7 J.M.PLANCHER,I.CUARTAS,J.SEOANE,L.E.BURGESS,R.T.ABRAHAM, JRNL AUTH 8 D.S.WEINSTEIN,G.M.SIMON,M.P.PATRICELLI,T.M.KINSELLA JRNL TITL CHEMOPROTEOMIC DISCOVERY OF A COVALENT ALLOSTERIC INHIBITOR JRNL TITL 2 OF WRN HELICASE. JRNL REF NATURE V. 629 435 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38658751 JRNL DOI 10.1038/S41586-024-07318-Y REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : 57683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1400 - 4.1700 1.00 3587 178 0.1499 0.1678 REMARK 3 2 4.1700 - 3.3100 1.00 3417 182 0.1559 0.1809 REMARK 3 3 3.3100 - 2.8900 1.00 3362 190 0.1801 0.2089 REMARK 3 4 2.8900 - 2.6300 1.00 3382 181 0.1920 0.2258 REMARK 3 5 2.6300 - 2.4400 1.00 3324 176 0.1891 0.2178 REMARK 3 6 2.4400 - 2.2900 1.00 3352 171 0.1897 0.2254 REMARK 3 7 2.2900 - 2.1800 1.00 3317 177 0.1902 0.2428 REMARK 3 8 2.1800 - 2.0800 1.00 3329 150 0.1868 0.2487 REMARK 3 9 2.0800 - 2.0000 1.00 3297 166 0.2006 0.2082 REMARK 3 10 2.0000 - 1.9400 1.00 3304 178 0.2157 0.2513 REMARK 3 11 1.9400 - 1.8700 0.99 3313 162 0.2155 0.2592 REMARK 3 12 1.8700 - 1.8200 0.99 3269 163 0.2165 0.2337 REMARK 3 13 1.8200 - 1.7700 0.99 3266 164 0.2199 0.2522 REMARK 3 14 1.7700 - 1.7300 0.93 3091 147 0.2302 0.2843 REMARK 3 15 1.7300 - 1.6900 0.80 2664 130 0.2336 0.2851 REMARK 3 16 1.6900 - 1.6500 0.71 2325 137 0.2494 0.3009 REMARK 3 17 1.6500 - 1.6200 0.54 1755 106 0.2644 0.2852 REMARK 3 18 1.6200 - 1.5900 0.30 989 50 0.2862 0.3160 REMARK 3 19 1.5900 - 1.5600 0.13 413 25 0.2571 0.3232 REMARK 3 20 1.5600 - 1.5400 0.03 91 3 0.3038 0.2306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 527 THROUGH 718 ) OR (RESID REMARK 3 1001)) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6579 37.8565 6.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.2065 REMARK 3 T33: 0.1568 T12: 0.0762 REMARK 3 T13: 0.0392 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 2.5214 L22: 3.1735 REMARK 3 L33: 2.9098 L12: -0.5998 REMARK 3 L13: -0.7245 L23: 1.4229 REMARK 3 S TENSOR REMARK 3 S11: 0.1894 S12: 0.2888 S13: 0.2352 REMARK 3 S21: -0.4151 S22: -0.1386 S23: 0.0539 REMARK 3 S31: -0.4813 S32: -0.4359 S33: -0.0291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 719 THROUGH 799 ) OR (RESID REMARK 3 1002)) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6168 18.5195 24.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.1022 REMARK 3 T33: 0.1460 T12: 0.0104 REMARK 3 T13: 0.0046 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.4135 L22: 1.6423 REMARK 3 L33: 2.8574 L12: 1.0171 REMARK 3 L13: -1.5865 L23: -0.8981 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.2609 S13: -0.1819 REMARK 3 S21: 0.0854 S22: -0.1028 S23: -0.0063 REMARK 3 S31: 0.1232 S32: -0.0419 S33: 0.0093 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 800 THROUGH 885 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1580 19.5051 20.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.2014 T22: 0.1880 REMARK 3 T33: 0.1779 T12: -0.0205 REMARK 3 T13: 0.0104 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.9092 L22: 1.2873 REMARK 3 L33: 2.0231 L12: 0.0303 REMARK 3 L13: -0.5948 L23: -0.2884 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: 0.2080 S13: -0.2492 REMARK 3 S21: -0.1860 S22: -0.1198 S23: -0.0100 REMARK 3 S31: 0.1285 S32: -0.0195 S33: 0.0821 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 886 THROUGH 945 ) OR (RESID REMARK 3 1000)) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8844 15.8288 26.6470 REMARK 3 T TENSOR REMARK 3 T11: 0.1552 T22: 0.3580 REMARK 3 T33: 0.3583 T12: 0.0070 REMARK 3 T13: -0.0682 T23: 0.1449 REMARK 3 L TENSOR REMARK 3 L11: 3.3658 L22: 5.6124 REMARK 3 L33: 5.8308 L12: 0.2057 REMARK 3 L13: -0.2164 L23: 1.7496 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.6590 S13: -0.3932 REMARK 3 S21: 0.2716 S22: -0.0882 S23: -0.4628 REMARK 3 S31: 0.2102 S32: 0.4677 S33: 0.0484 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: COVALENT ADDUCT, USED TWO ALTERNATIVE REMARK 3 LIGAND CONFORMATIONS TO EXPAIN ALTERNATE CYS CONFORMATIONS REMARK 4 REMARK 4 7GQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1001406523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 68.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.752 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.05 REMARK 200 R MERGE FOR SHELL (I) : 2.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN IN 20MM TRIS/HCL REMARK 280 PH7.5, 350MM NACL, 0.25MM TCEP, 2.5% GLYCEROL MIXED 40NL WITH REMARK 280 180NL RESERVOIR CONSISTING OF 20 %V/V ETHYLENE GLYCOL, 11 %W/V REMARK 280 PEG8000, 0.08M MES/NAOH PH6.2, 0.08M IMIDAZOLE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.12750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.81200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.90100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.81200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.12750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.90100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 516 REMARK 465 ASN A 517 REMARK 465 GLU A 518 REMARK 465 GLY A 519 REMARK 465 GLU A 520 REMARK 465 GLU A 521 REMARK 465 ASP A 522 REMARK 465 ASP A 523 REMARK 465 ASP A 524 REMARK 465 LYS A 525 REMARK 465 ASP A 526 REMARK 465 GLY A 946 REMARK 465 GLY A 947 REMARK 465 ARG A 948 REMARK 465 LEU A 949 REMARK 465 GLU A 950 REMARK 465 VAL A 951 REMARK 465 LEU A 952 REMARK 465 PHE A 953 REMARK 465 GLN A 954 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 727 CB CYS A 727 SG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 845 CG - SD - CE ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 590 -153.79 -123.97 REMARK 500 ASP A 679 38.65 -140.19 REMARK 500 ALA A 871 0.20 -69.69 REMARK 500 PHE A 917 76.70 -100.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 732 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 545 O REMARK 620 2 GOL A1003 O1 81.6 REMARK 620 3 HOH A1179 O 86.6 69.4 REMARK 620 4 HOH A1246 O 149.8 72.1 97.5 REMARK 620 5 HOH A1268 O 80.5 161.4 114.4 123.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 908 SG REMARK 620 2 CYS A 935 SG 99.8 REMARK 620 3 CYS A 936 SG 116.8 119.2 REMARK 620 4 CYS A 939 SG 102.5 113.9 103.8 REMARK 620 N 1 2 3 DBREF 7GQU A 517 945 UNP Q14191 WRN_HUMAN 517 945 SEQADV 7GQU MET A 516 UNP Q14191 INITIATING METHIONINE SEQADV 7GQU GLY A 946 UNP Q14191 EXPRESSION TAG SEQADV 7GQU GLY A 947 UNP Q14191 EXPRESSION TAG SEQADV 7GQU ARG A 948 UNP Q14191 EXPRESSION TAG SEQADV 7GQU LEU A 949 UNP Q14191 EXPRESSION TAG SEQADV 7GQU GLU A 950 UNP Q14191 EXPRESSION TAG SEQADV 7GQU VAL A 951 UNP Q14191 EXPRESSION TAG SEQADV 7GQU LEU A 952 UNP Q14191 EXPRESSION TAG SEQADV 7GQU PHE A 953 UNP Q14191 EXPRESSION TAG SEQADV 7GQU GLN A 954 UNP Q14191 EXPRESSION TAG SEQRES 1 A 439 MET ASN GLU GLY GLU GLU ASP ASP ASP LYS ASP PHE LEU SEQRES 2 A 439 TRP PRO ALA PRO ASN GLU GLU GLN VAL THR CYS LEU LYS SEQRES 3 A 439 MET TYR PHE GLY HIS SER SER PHE LYS PRO VAL GLN TRP SEQRES 4 A 439 LYS VAL ILE HIS SER VAL LEU GLU GLU ARG ARG ASP ASN SEQRES 5 A 439 VAL ALA VAL MET ALA THR GLY TYR GLY LYS SER LEU CYS SEQRES 6 A 439 PHE GLN TYR PRO PRO VAL TYR VAL GLY LYS ILE GLY LEU SEQRES 7 A 439 VAL ILE SER PRO LEU ILE SER LEU MET GLU ASP GLN VAL SEQRES 8 A 439 LEU GLN LEU LYS MET SER ASN ILE PRO ALA CYS PHE LEU SEQRES 9 A 439 GLY SER ALA GLN SER GLU ASN VAL LEU THR ASP ILE LYS SEQRES 10 A 439 LEU GLY LYS TYR ARG ILE VAL TYR VAL THR PRO GLU TYR SEQRES 11 A 439 CYS SER GLY ASN MET GLY LEU LEU GLN GLN LEU GLU ALA SEQRES 12 A 439 ASP ILE GLY ILE THR LEU ILE ALA VAL ASP GLU ALA HIS SEQRES 13 A 439 CYS ILE SER GLU TRP GLY HIS ASP PHE ARG ASP SER PHE SEQRES 14 A 439 ARG LYS LEU GLY SER LEU LYS THR ALA LEU PRO MET VAL SEQRES 15 A 439 PRO ILE VAL ALA LEU THR ALA THR ALA SER SER SER ILE SEQRES 16 A 439 ARG GLU ASP ILE VAL ARG CYS LEU ASN LEU ARG ASN PRO SEQRES 17 A 439 GLN ILE THR CYS THR GLY PHE ASP ARG PRO ASN LEU TYR SEQRES 18 A 439 LEU GLU VAL ARG ARG LYS THR GLY ASN ILE LEU GLN ASP SEQRES 19 A 439 LEU GLN PRO PHE LEU VAL LYS THR SER SER HIS TRP GLU SEQRES 20 A 439 PHE GLU GLY PRO THR ILE ILE TYR CYS PRO SER ARG LYS SEQRES 21 A 439 MET THR GLN GLN VAL THR GLY GLU LEU ARG LYS LEU ASN SEQRES 22 A 439 LEU SER CYS GLY THR TYR HIS ALA GLY MET SER PHE SER SEQRES 23 A 439 THR ARG LYS ASP ILE HIS HIS ARG PHE VAL ARG ASP GLU SEQRES 24 A 439 ILE GLN CYS VAL ILE ALA THR ILE ALA PHE GLY MET GLY SEQRES 25 A 439 ILE ASN LYS ALA ASP ILE ARG GLN VAL ILE HIS TYR GLY SEQRES 26 A 439 ALA PRO LYS ASP MET GLU SER TYR TYR GLN GLU ILE GLY SEQRES 27 A 439 ARG ALA GLY ARG ASP GLY LEU GLN SER SER CYS HIS VAL SEQRES 28 A 439 LEU TRP ALA PRO ALA ASP ILE ASN LEU ASN ARG HIS LEU SEQRES 29 A 439 LEU THR GLU ILE ARG ASN GLU LYS PHE ARG LEU TYR LYS SEQRES 30 A 439 LEU LYS MET MET ALA LYS MET GLU LYS TYR LEU HIS SER SEQRES 31 A 439 SER ARG CYS ARG ARG GLN ILE ILE LEU SER HIS PHE GLU SEQRES 32 A 439 ASP LYS GLN VAL GLN LYS ALA SER LEU GLY ILE MET GLY SEQRES 33 A 439 THR GLU LYS CYS CYS ASP ASN CYS ARG SER ARG LEU ASP SEQRES 34 A 439 HIS GLY GLY ARG LEU GLU VAL LEU PHE GLN HET ZN A1000 1 HET ADP A1001 27 HET X1L A1002 60 HET GOL A1003 6 HET NA A1004 1 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM X1L N-[(1S)-1-CYCLOPROPYL-3-(METHANESULFONYL)PROPYL]-2-(1, HETNAM 2 X1L 1-DIFLUOROETHYL)-4-PHENOXYPYRIMIDINE-5-CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 X1L C20 H23 F2 N3 O4 S FORMUL 5 GOL C3 H8 O3 FORMUL 6 NA NA 1+ FORMUL 7 HOH *203(H2 O) HELIX 1 AA1 ASN A 533 GLY A 545 1 13 HELIX 2 AA2 LYS A 550 ARG A 564 1 15 HELIX 3 AA3 SER A 578 GLY A 589 1 12 HELIX 4 AA4 LEU A 598 SER A 612 1 15 HELIX 5 AA5 SER A 624 LEU A 633 1 10 HELIX 6 AA6 THR A 642 ASN A 649 1 8 HELIX 7 AA7 ASN A 649 ILE A 660 1 12 HELIX 8 AA8 GLU A 669 SER A 674 5 6 HELIX 9 AA9 ARG A 681 LEU A 687 5 7 HELIX 10 AB1 GLY A 688 LEU A 694 1 7 HELIX 11 AB2 SER A 707 ASN A 719 1 13 HELIX 12 AB3 ASN A 745 GLN A 751 1 7 HELIX 13 AB4 SER A 773 LEU A 787 1 15 HELIX 14 AB5 SER A 799 ARG A 812 1 14 HELIX 15 AB6 ASP A 844 ARG A 854 1 11 HELIX 16 AB7 ASP A 872 ASN A 876 5 5 HELIX 17 AB8 ASN A 885 SER A 905 1 21 HELIX 18 AB9 CYS A 908 HIS A 916 1 9 HELIX 19 AC1 GLN A 923 MET A 930 1 8 HELIX 20 AC2 CYS A 936 HIS A 945 1 10 SHEET 1 AA1 7 ALA A 616 PHE A 618 0 SHEET 2 AA1 7 ILE A 638 VAL A 641 1 O TYR A 640 N CYS A 617 SHEET 3 AA1 7 ILE A 591 ILE A 595 1 N GLY A 592 O VAL A 639 SHEET 4 AA1 7 ILE A 662 VAL A 667 1 O ALA A 666 N LEU A 593 SHEET 5 AA1 7 ILE A 699 THR A 703 1 O VAL A 700 N ILE A 665 SHEET 6 AA1 7 ASN A 567 VAL A 570 1 N ASN A 567 O ALA A 701 SHEET 7 AA1 7 GLN A 724 CYS A 727 1 O THR A 726 N VAL A 570 SHEET 1 AA2 6 LEU A 735 ARG A 741 0 SHEET 2 AA2 6 SER A 862 TRP A 868 1 O CYS A 864 N TYR A 736 SHEET 3 AA2 6 GLN A 835 TYR A 839 1 N HIS A 838 O LEU A 867 SHEET 4 AA2 6 THR A 767 TYR A 770 1 N TYR A 770 O ILE A 837 SHEET 5 AA2 6 CYS A 817 THR A 821 1 O ALA A 820 N ILE A 769 SHEET 6 AA2 6 CYS A 791 HIS A 795 1 N GLY A 792 O ILE A 819 SHEET 1 AA3 2 LEU A 754 LYS A 756 0 SHEET 2 AA3 2 TRP A 761 PHE A 763 -1 O GLU A 762 N VAL A 755 LINK SG ACYS A 727 C7 AX1L A1002 1555 1555 1.82 LINK SG BCYS A 727 C7 BX1L A1002 1555 1555 1.81 LINK O GLY A 545 NA NA A1004 1555 1555 2.48 LINK SG CYS A 908 ZN ZN A1000 1555 1555 2.34 LINK SG CYS A 935 ZN ZN A1000 1555 1555 2.33 LINK SG CYS A 936 ZN ZN A1000 1555 1555 2.32 LINK SG CYS A 939 ZN ZN A1000 1555 1555 2.39 LINK O1 GOL A1003 NA NA A1004 1555 1555 2.77 LINK NA NA A1004 O HOH A1179 1555 1555 2.59 LINK NA NA A1004 O HOH A1246 1555 1555 2.21 LINK NA NA A1004 O HOH A1268 1555 1555 2.51 CISPEP 1 TRP A 529 PRO A 530 0 -6.27 CRYST1 46.255 83.802 119.624 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021619 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008360 0.00000