data_7GXC # _entry.id 7GXC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7GXC pdb_00007gxc 10.2210/pdb7gxc/pdb WWPDB D_1001406755 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7GXC _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2024-01-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.status_code_nmr_data ? # _pdbx_contact_author.id 1 _pdbx_contact_author.email Rob.vanMontfort@icr.ac.uk _pdbx_contact_author.name_first Rob _pdbx_contact_author.name_last 'van Montfort' _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Rodrigues, M.J.' 1 0000-0003-1243-903X 'Le Bihan, Y.V.' 2 0000-0002-6850-9706 'van Montfort, R.L.M.' 3 0000-0002-5688-3450 # _citation.id primary _citation.title 'Specific radiation damage to halogenated inhibitors and ligands in protein-ligand crystal structures' _citation.journal_abbrev J.Appl.Crystallogr. _citation.journal_volume 57 _citation.page_first 1951 _citation.page_last 1965 _citation.year 2024 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1107/S1600576724010549 _citation.journal_id_ASTM JACGAR _citation.country US _citation.journal_id_ISSN 1600-5767 _citation.journal_id_CSD ? _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rodrigues, M.J.' 1 ? primary 'Cabry, M.' 2 ? primary 'Collie, G.' 3 ? primary 'Carter, M.' 4 ? primary 'McAndrew, C.' 5 ? primary 'Owen, R.L.' 6 ? primary 'Bellenie, B.R.' 7 ? primary 'Le Bihan, Y.V.' 8 ? primary 'van Montfort, R.L.M.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell lymphoma 6 protein' 14536.915 1 ? ? ? ? 2 polymer syn 'WVIP tetrapeptide' 610.744 1 ? ? ? ? 3 non-polymer syn '5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one' 306.771 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 non-polymer nat 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 6 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'BCL-6,B-cell lymphoma 5 protein,BCL-5,Protein LAZ-3,Zinc finger and BTB domain-containing protein 27,Zinc finger protein 51' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPE GFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE ; ;GPGADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPE GFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE ; A ? 2 'polypeptide(L)' no yes '(ACE)WVIPA' XWVIPA D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 '5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one' A1ACB 4 'CHLORIDE ION' CL 5 'DIMETHYL SULFOXIDE' DMS 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 ALA n 1 5 ASP n 1 6 SER n 1 7 CYS n 1 8 ILE n 1 9 GLN n 1 10 PHE n 1 11 THR n 1 12 ARG n 1 13 HIS n 1 14 ALA n 1 15 SER n 1 16 ASP n 1 17 VAL n 1 18 LEU n 1 19 LEU n 1 20 ASN n 1 21 LEU n 1 22 ASN n 1 23 ARG n 1 24 LEU n 1 25 ARG n 1 26 SER n 1 27 ARG n 1 28 ASP n 1 29 ILE n 1 30 LEU n 1 31 THR n 1 32 ASP n 1 33 VAL n 1 34 VAL n 1 35 ILE n 1 36 VAL n 1 37 VAL n 1 38 SER n 1 39 ARG n 1 40 GLU n 1 41 GLN n 1 42 PHE n 1 43 ARG n 1 44 ALA n 1 45 HIS n 1 46 LYS n 1 47 THR n 1 48 VAL n 1 49 LEU n 1 50 MET n 1 51 ALA n 1 52 CYS n 1 53 SER n 1 54 GLY n 1 55 LEU n 1 56 PHE n 1 57 TYR n 1 58 SER n 1 59 ILE n 1 60 PHE n 1 61 THR n 1 62 ASP n 1 63 GLN n 1 64 LEU n 1 65 LYS n 1 66 CYS n 1 67 ASN n 1 68 LEU n 1 69 SER n 1 70 VAL n 1 71 ILE n 1 72 ASN n 1 73 LEU n 1 74 ASP n 1 75 PRO n 1 76 GLU n 1 77 ILE n 1 78 ASN n 1 79 PRO n 1 80 GLU n 1 81 GLY n 1 82 PHE n 1 83 CYS n 1 84 ILE n 1 85 LEU n 1 86 LEU n 1 87 ASP n 1 88 PHE n 1 89 MET n 1 90 TYR n 1 91 THR n 1 92 SER n 1 93 ARG n 1 94 LEU n 1 95 ASN n 1 96 LEU n 1 97 ARG n 1 98 GLU n 1 99 GLY n 1 100 ASN n 1 101 ILE n 1 102 MET n 1 103 ALA n 1 104 VAL n 1 105 MET n 1 106 ALA n 1 107 THR n 1 108 ALA n 1 109 MET n 1 110 TYR n 1 111 LEU n 1 112 GLN n 1 113 MET n 1 114 GLU n 1 115 HIS n 1 116 VAL n 1 117 VAL n 1 118 ASP n 1 119 THR n 1 120 CYS n 1 121 ARG n 1 122 LYS n 1 123 PHE n 1 124 ILE n 1 125 LYS n 1 126 ALA n 1 127 SER n 1 128 GLU n 2 1 ACE n 2 2 TRP n 2 3 VAL n 2 4 ILE n 2 5 PRO n 2 6 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 128 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BCL6, BCL5, LAZ3, ZBTB27, ZNF51' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-AI _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET48b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 6 'synthetic construct' ? 32630 ? 3 2 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1ACB non-polymer . '5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one' ? 'C13 H11 Cl N4 O S' 306.771 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 ? ? ? A . n A 1 2 PRO 2 3 ? ? ? A . n A 1 3 GLY 3 4 ? ? ? A . n A 1 4 ALA 4 5 ? ? ? A . n A 1 5 ASP 5 6 ? ? ? A . n A 1 6 SER 6 7 7 SER SER A . n A 1 7 CYS 7 8 8 CYS CYS A . n A 1 8 ILE 8 9 9 ILE ILE A . n A 1 9 GLN 9 10 10 GLN GLN A . n A 1 10 PHE 10 11 11 PHE PHE A . n A 1 11 THR 11 12 12 THR THR A . n A 1 12 ARG 12 13 13 ARG ARG A . n A 1 13 HIS 13 14 14 HIS HIS A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 SER 15 16 16 SER SER A . n A 1 16 ASP 16 17 17 ASP ASP A . n A 1 17 VAL 17 18 18 VAL VAL A . n A 1 18 LEU 18 19 19 LEU LEU A . n A 1 19 LEU 19 20 20 LEU LEU A . n A 1 20 ASN 20 21 21 ASN ASN A . n A 1 21 LEU 21 22 22 LEU LEU A . n A 1 22 ASN 22 23 23 ASN ASN A . n A 1 23 ARG 23 24 24 ARG ARG A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 ARG 25 26 26 ARG ARG A . n A 1 26 SER 26 27 27 SER SER A . n A 1 27 ARG 27 28 28 ARG ARG A . n A 1 28 ASP 28 29 29 ASP ASP A . n A 1 29 ILE 29 30 30 ILE ILE A . n A 1 30 LEU 30 31 31 LEU LEU A . n A 1 31 THR 31 32 32 THR THR A . n A 1 32 ASP 32 33 33 ASP ASP A . n A 1 33 VAL 33 34 34 VAL VAL A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 ILE 35 36 36 ILE ILE A . n A 1 36 VAL 36 37 37 VAL VAL A . n A 1 37 VAL 37 38 38 VAL VAL A . n A 1 38 SER 38 39 39 SER SER A . n A 1 39 ARG 39 40 40 ARG ARG A . n A 1 40 GLU 40 41 41 GLU GLU A . n A 1 41 GLN 41 42 42 GLN GLN A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 ARG 43 44 44 ARG ARG A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 HIS 45 46 46 HIS HIS A . n A 1 46 LYS 46 47 47 LYS LYS A . n A 1 47 THR 47 48 48 THR THR A . n A 1 48 VAL 48 49 49 VAL VAL A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 MET 50 51 51 MET MET A . n A 1 51 ALA 51 52 52 ALA ALA A . n A 1 52 CYS 52 53 53 CYS CYS A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 GLY 54 55 55 GLY GLY A . n A 1 55 LEU 55 56 56 LEU LEU A . n A 1 56 PHE 56 57 57 PHE PHE A . n A 1 57 TYR 57 58 58 TYR TYR A . n A 1 58 SER 58 59 59 SER SER A . n A 1 59 ILE 59 60 60 ILE ILE A . n A 1 60 PHE 60 61 61 PHE PHE A . n A 1 61 THR 61 62 62 THR THR A . n A 1 62 ASP 62 63 63 ASP ASP A . n A 1 63 GLN 63 64 64 GLN GLN A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 LYS 65 66 66 LYS LYS A . n A 1 66 CYS 66 67 67 CYS CYS A . n A 1 67 ASN 67 68 68 ASN ASN A . n A 1 68 LEU 68 69 69 LEU LEU A . n A 1 69 SER 69 70 70 SER SER A . n A 1 70 VAL 70 71 71 VAL VAL A . n A 1 71 ILE 71 72 72 ILE ILE A . n A 1 72 ASN 72 73 73 ASN ASN A . n A 1 73 LEU 73 74 74 LEU LEU A . n A 1 74 ASP 74 75 75 ASP ASP A . n A 1 75 PRO 75 76 76 PRO PRO A . n A 1 76 GLU 76 77 77 GLU GLU A . n A 1 77 ILE 77 78 78 ILE ILE A . n A 1 78 ASN 78 79 79 ASN ASN A . n A 1 79 PRO 79 80 80 PRO PRO A . n A 1 80 GLU 80 81 81 GLU GLU A . n A 1 81 GLY 81 82 82 GLY GLY A . n A 1 82 PHE 82 83 83 PHE PHE A . n A 1 83 CYS 83 84 84 CYS CYS A . n A 1 84 ILE 84 85 85 ILE ILE A . n A 1 85 LEU 85 86 86 LEU LEU A . n A 1 86 LEU 86 87 87 LEU LEU A . n A 1 87 ASP 87 88 88 ASP ASP A . n A 1 88 PHE 88 89 89 PHE PHE A . n A 1 89 MET 89 90 90 MET MET A . n A 1 90 TYR 90 91 91 TYR TYR A . n A 1 91 THR 91 92 92 THR THR A . n A 1 92 SER 92 93 93 SER SER A . n A 1 93 ARG 93 94 94 ARG ARG A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 ASN 95 96 96 ASN ASN A . n A 1 96 LEU 96 97 97 LEU LEU A . n A 1 97 ARG 97 98 98 ARG ARG A . n A 1 98 GLU 98 99 99 GLU GLU A . n A 1 99 GLY 99 100 100 GLY GLY A . n A 1 100 ASN 100 101 101 ASN ASN A . n A 1 101 ILE 101 102 102 ILE ILE A . n A 1 102 MET 102 103 103 MET MET A . n A 1 103 ALA 103 104 104 ALA ALA A . n A 1 104 VAL 104 105 105 VAL VAL A . n A 1 105 MET 105 106 106 MET MET A . n A 1 106 ALA 106 107 107 ALA ALA A . n A 1 107 THR 107 108 108 THR THR A . n A 1 108 ALA 108 109 109 ALA ALA A . n A 1 109 MET 109 110 110 MET MET A . n A 1 110 TYR 110 111 111 TYR TYR A . n A 1 111 LEU 111 112 112 LEU LEU A . n A 1 112 GLN 112 113 113 GLN GLN A . n A 1 113 MET 113 114 114 MET MET A . n A 1 114 GLU 114 115 115 GLU GLU A . n A 1 115 HIS 115 116 116 HIS HIS A . n A 1 116 VAL 116 117 117 VAL VAL A . n A 1 117 VAL 117 118 118 VAL VAL A . n A 1 118 ASP 118 119 119 ASP ASP A . n A 1 119 THR 119 120 120 THR THR A . n A 1 120 CYS 120 121 121 CYS CYS A . n A 1 121 ARG 121 122 122 ARG ARG A . n A 1 122 LYS 122 123 123 LYS LYS A . n A 1 123 PHE 123 124 124 PHE PHE A . n A 1 124 ILE 124 125 125 ILE ILE A . n A 1 125 LYS 125 126 126 LYS LYS A . n A 1 126 ALA 126 127 127 ALA ALA A . n A 1 127 SER 127 128 128 SER SER A . n A 1 128 GLU 128 129 129 GLU GLU A . n B 2 1 ACE 1 0 0 ACE ACE D . n B 2 2 TRP 2 1 1 TRP TRP D . n B 2 3 VAL 3 2 2 VAL VAL D . n B 2 4 ILE 4 3 3 ILE ILE D . n B 2 5 PRO 5 4 4 PRO PRO D . n B 2 6 ALA 6 5 5 ALA ALA D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1ACB 1 201 1 A1ACB 767 A . D 4 CL 1 202 1 CL CL A . E 4 CL 1 203 2 CL CL A . F 5 DMS 1 101 1 DMS DMS D . G 6 HOH 1 301 31 HOH HOH A . G 6 HOH 2 302 170 HOH HOH A . G 6 HOH 3 303 151 HOH HOH A . G 6 HOH 4 304 74 HOH HOH A . G 6 HOH 5 305 36 HOH HOH A . G 6 HOH 6 306 8 HOH HOH A . G 6 HOH 7 307 20 HOH HOH A . G 6 HOH 8 308 39 HOH HOH A . G 6 HOH 9 309 30 HOH HOH A . G 6 HOH 10 310 188 HOH HOH A . G 6 HOH 11 311 111 HOH HOH A . G 6 HOH 12 312 125 HOH HOH A . G 6 HOH 13 313 81 HOH HOH A . G 6 HOH 14 314 160 HOH HOH A . G 6 HOH 15 315 139 HOH HOH A . G 6 HOH 16 316 204 HOH HOH A . G 6 HOH 17 317 21 HOH HOH A . G 6 HOH 18 318 167 HOH HOH A . G 6 HOH 19 319 103 HOH HOH A . G 6 HOH 20 320 156 HOH HOH A . G 6 HOH 21 321 133 HOH HOH A . G 6 HOH 22 322 144 HOH HOH A . G 6 HOH 23 323 148 HOH HOH A . G 6 HOH 24 324 83 HOH HOH A . G 6 HOH 25 325 58 HOH HOH A . G 6 HOH 26 326 72 HOH HOH A . G 6 HOH 27 327 7 HOH HOH A . G 6 HOH 28 328 106 HOH HOH A . G 6 HOH 29 329 50 HOH HOH A . G 6 HOH 30 330 79 HOH HOH A . G 6 HOH 31 331 60 HOH HOH A . G 6 HOH 32 332 98 HOH HOH A . G 6 HOH 33 333 45 HOH HOH A . G 6 HOH 34 334 147 HOH HOH A . G 6 HOH 35 335 77 HOH HOH A . G 6 HOH 36 336 17 HOH HOH A . G 6 HOH 37 337 13 HOH HOH A . G 6 HOH 38 338 14 HOH HOH A . G 6 HOH 39 339 116 HOH HOH A . G 6 HOH 40 340 112 HOH HOH A . G 6 HOH 41 341 191 HOH HOH A . G 6 HOH 42 342 87 HOH HOH A . G 6 HOH 43 343 9 HOH HOH A . G 6 HOH 44 344 4 HOH HOH A . G 6 HOH 45 345 164 HOH HOH A . G 6 HOH 46 346 195 HOH HOH A . G 6 HOH 47 347 73 HOH HOH A . G 6 HOH 48 348 107 HOH HOH A . G 6 HOH 49 349 149 HOH HOH A . G 6 HOH 50 350 18 HOH HOH A . G 6 HOH 51 351 108 HOH HOH A . G 6 HOH 52 352 120 HOH HOH A . G 6 HOH 53 353 82 HOH HOH A . G 6 HOH 54 354 92 HOH HOH A . G 6 HOH 55 355 78 HOH HOH A . G 6 HOH 56 356 71 HOH HOH A . G 6 HOH 57 357 75 HOH HOH A . G 6 HOH 58 358 25 HOH HOH A . G 6 HOH 59 359 80 HOH HOH A . G 6 HOH 60 360 158 HOH HOH A . G 6 HOH 61 361 84 HOH HOH A . G 6 HOH 62 362 198 HOH HOH A . G 6 HOH 63 363 76 HOH HOH A . G 6 HOH 64 364 65 HOH HOH A . G 6 HOH 65 365 26 HOH HOH A . G 6 HOH 66 366 15 HOH HOH A . G 6 HOH 67 367 24 HOH HOH A . G 6 HOH 68 368 150 HOH HOH A . G 6 HOH 69 369 187 HOH HOH A . G 6 HOH 70 370 62 HOH HOH A . G 6 HOH 71 371 177 HOH HOH A . G 6 HOH 72 372 145 HOH HOH A . G 6 HOH 73 373 146 HOH HOH A . G 6 HOH 74 374 131 HOH HOH A . G 6 HOH 75 375 85 HOH HOH A . G 6 HOH 76 376 68 HOH HOH A . G 6 HOH 77 377 199 HOH HOH A . G 6 HOH 78 378 93 HOH HOH A . G 6 HOH 79 379 113 HOH HOH A . G 6 HOH 80 380 182 HOH HOH A . G 6 HOH 81 381 136 HOH HOH A . G 6 HOH 82 382 34 HOH HOH A . G 6 HOH 83 383 28 HOH HOH A . G 6 HOH 84 384 48 HOH HOH A . G 6 HOH 85 385 88 HOH HOH A . G 6 HOH 86 386 165 HOH HOH A . G 6 HOH 87 387 135 HOH HOH A . G 6 HOH 88 388 123 HOH HOH A . G 6 HOH 89 389 163 HOH HOH A . G 6 HOH 90 390 95 HOH HOH A . G 6 HOH 91 391 91 HOH HOH A . G 6 HOH 92 392 23 HOH HOH A . G 6 HOH 93 393 90 HOH HOH A . G 6 HOH 94 394 32 HOH HOH A . G 6 HOH 95 395 54 HOH HOH A . G 6 HOH 96 396 159 HOH HOH A . G 6 HOH 97 397 53 HOH HOH A . G 6 HOH 98 398 172 HOH HOH A . G 6 HOH 99 399 19 HOH HOH A . G 6 HOH 100 400 56 HOH HOH A . G 6 HOH 101 401 66 HOH HOH A . G 6 HOH 102 402 169 HOH HOH A . G 6 HOH 103 403 176 HOH HOH A . G 6 HOH 104 404 184 HOH HOH A . G 6 HOH 105 405 38 HOH HOH A . G 6 HOH 106 406 192 HOH HOH A . G 6 HOH 107 407 175 HOH HOH A . G 6 HOH 108 408 40 HOH HOH A . G 6 HOH 109 409 124 HOH HOH A . G 6 HOH 110 410 194 HOH HOH A . G 6 HOH 111 411 109 HOH HOH A . G 6 HOH 112 412 69 HOH HOH A . G 6 HOH 113 413 141 HOH HOH A . G 6 HOH 114 414 179 HOH HOH A . G 6 HOH 115 415 134 HOH HOH A . G 6 HOH 116 416 193 HOH HOH A . G 6 HOH 117 417 157 HOH HOH A . G 6 HOH 118 418 202 HOH HOH A . G 6 HOH 119 419 94 HOH HOH A . G 6 HOH 120 420 208 HOH HOH A . G 6 HOH 121 421 173 HOH HOH A . G 6 HOH 122 422 174 HOH HOH A . G 6 HOH 123 423 57 HOH HOH A . G 6 HOH 124 424 35 HOH HOH A . G 6 HOH 125 425 63 HOH HOH A . G 6 HOH 126 426 33 HOH HOH A . G 6 HOH 127 427 196 HOH HOH A . G 6 HOH 128 428 189 HOH HOH A . G 6 HOH 129 429 51 HOH HOH A . G 6 HOH 130 430 121 HOH HOH A . G 6 HOH 131 431 197 HOH HOH A . G 6 HOH 132 432 200 HOH HOH A . G 6 HOH 133 433 42 HOH HOH A . G 6 HOH 134 434 118 HOH HOH A . G 6 HOH 135 435 209 HOH HOH A . G 6 HOH 136 436 117 HOH HOH A . G 6 HOH 137 437 41 HOH HOH A . G 6 HOH 138 438 100 HOH HOH A . G 6 HOH 139 439 203 HOH HOH A . G 6 HOH 140 440 97 HOH HOH A . G 6 HOH 141 441 43 HOH HOH A . G 6 HOH 142 442 49 HOH HOH A . G 6 HOH 143 443 67 HOH HOH A . G 6 HOH 144 444 201 HOH HOH A . G 6 HOH 145 445 140 HOH HOH A . G 6 HOH 146 446 155 HOH HOH A . G 6 HOH 147 447 122 HOH HOH A . G 6 HOH 148 448 206 HOH HOH A . G 6 HOH 149 449 47 HOH HOH A . G 6 HOH 150 450 52 HOH HOH A . G 6 HOH 151 451 154 HOH HOH A . G 6 HOH 152 452 205 HOH HOH A . G 6 HOH 153 453 180 HOH HOH A . G 6 HOH 154 454 104 HOH HOH A . G 6 HOH 155 455 207 HOH HOH A . G 6 HOH 156 456 142 HOH HOH A . G 6 HOH 157 457 186 HOH HOH A . G 6 HOH 158 458 168 HOH HOH A . H 6 HOH 1 201 46 HOH HOH D . H 6 HOH 2 202 22 HOH HOH D . H 6 HOH 3 203 61 HOH HOH D . H 6 HOH 4 204 55 HOH HOH D . H 6 HOH 5 205 152 HOH HOH D . H 6 HOH 6 206 27 HOH HOH D . H 6 HOH 7 207 211 HOH HOH D . H 6 HOH 8 208 37 HOH HOH D . H 6 HOH 9 209 212 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 40 ? CG ? A ARG 39 CG 2 1 Y 1 A ARG 40 ? CD ? A ARG 39 CD 3 1 Y 1 A ARG 40 ? NE ? A ARG 39 NE 4 1 Y 1 A ARG 40 ? CZ ? A ARG 39 CZ 5 1 Y 1 A ARG 40 ? NH1 ? A ARG 39 NH1 6 1 Y 1 A ARG 40 ? NH2 ? A ARG 39 NH2 7 1 Y 1 A GLN 64 ? CD ? A GLN 63 CD 8 1 Y 1 A GLN 64 ? OE1 ? A GLN 63 OE1 9 1 Y 1 A GLN 64 ? NE2 ? A GLN 63 NE2 10 1 Y 1 A ARG 98 ? NE ? A ARG 97 NE 11 1 Y 1 A ARG 98 ? CZ ? A ARG 97 CZ 12 1 Y 1 A ARG 98 ? NH1 ? A ARG 97 NH1 13 1 Y 1 A ARG 98 ? NH2 ? A ARG 97 NH2 14 1 Y 1 A GLU 115 ? CD ? A GLU 114 CD 15 1 Y 1 A GLU 115 ? OE1 ? A GLU 114 OE1 16 1 Y 1 A GLU 115 ? OE2 ? A GLU 114 OE2 17 1 Y 1 D ALA 5 ? CA ? B ALA 6 CA 18 1 Y 1 D ALA 5 ? C ? B ALA 6 C 19 1 Y 1 D ALA 5 ? O ? B ALA 6 O 20 1 Y 1 D ALA 5 ? CB ? B ALA 6 CB # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER 2.10.3 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 2 Aimless 0.5.32 29/03/17 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 Aimless 0.5.32 29/03/17 program 'Phil Evans' ? 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 4 BUSTER 2.10.3 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com phasing http://www.globalphasing.com/buster/ ? ? 5 PDB_EXTRACT 3.24 'Sep. 1, 2017' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.entry_id 7GXC _cell.length_a 67.670 _cell.length_b 67.670 _cell.length_c 166.530 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GXC _symmetry.Int_Tables_number 178 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.entry_id 7GXC _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.63 _exptl_crystal.density_percent_sol 66.15 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '1.0 M K2HPO4, 0.7 M NaH2PO4, 75 mM sodium acetate pH 4.5, 2% DMSO' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.pdbx_collection_date 2017-07-31 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9686 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_wavelength_list 0.9686 _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7GXC _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.940 _reflns.d_resolution_high 1.950 _reflns.number_obs 17308 _reflns.number_all ? _reflns.percent_possible_obs 100.000 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.000 _reflns.B_iso_Wilson_estimate 29.130 _reflns.pdbx_redundancy 9.000 _reflns.pdbx_Rrim_I_all 0.093 _reflns.pdbx_Rpim_I_all 0.031 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 155971 _reflns.pdbx_scaling_rejects 560 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.950 2.000 ? 10993 1184 ? 0.422 ? ? ? 9.300 ? 4.800 ? ? ? ? ? ? 100.000 0.447 0.146 0.955 1 2 8.940 33.940 ? 1621 244 ? 0.063 ? ? ? 6.600 ? 22.200 ? ? ? ? ? ? 98.900 0.067 0.024 0.997 # _refine.entry_id 7GXC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.9500 _refine.ls_d_res_low 33.9400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 17240 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1790 _refine.ls_R_factor_R_work 0.1780 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2070 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.2700 _refine.ls_number_reflns_R_free 909 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.2600 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.3632 _refine.aniso_B[2][2] -0.3632 _refine.aniso_B[3][3] 0.7263 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9560 _refine.correlation_coeff_Fo_to_Fc_free 0.9420 _refine.overall_SU_R_Cruickshank_DPI 0.1130 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.1100 _refine.pdbx_overall_SU_R_Blow_DPI 0.1310 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.1200 _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 123.020 _refine.B_iso_min 15.490 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_analyze.entry_id 7GXC _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.210 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9500 _refine_hist.d_res_low 33.9400 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 168 _refine_hist.number_atoms_total 1202 _refine_hist.pdbx_number_residues_total 129 _refine_hist.pdbx_B_iso_mean_ligand 30.63 _refine_hist.pdbx_B_iso_mean_solvent 49.35 _refine_hist.pdbx_number_atoms_protein 1008 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' t_dihedral_angle_d 405 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? ? ? ? 'X-RAY DIFFRACTION' t_gen_planes 216 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1147 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 153 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance 7 ? ? 1.000 HARMONIC 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1511 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1147 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1565 0.930 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.250 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 15.420 ? ? ? # _refine_ls_shell.d_res_high 1.9500 _refine_ls_shell.d_res_low 2.0700 _refine_ls_shell.pdbx_total_number_of_bins_used 9 _refine_ls_shell.percent_reflns_obs 99.7800 _refine_ls_shell.number_reflns_R_work 2566 _refine_ls_shell.R_factor_all 0.1806 _refine_ls_shell.R_factor_R_work 0.1786 _refine_ls_shell.R_factor_R_free 0.2177 _refine_ls_shell.percent_reflns_R_free 5.1700 _refine_ls_shell.number_reflns_R_free 140 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.number_reflns_all 2706 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 7GXC _struct.title 'Crystal Structure of B-cell lymphoma 6 protein BTB domain in complex with ligand 8 at 5.43 MGy X-ray dose.' _struct.pdbx_CASP_flag ? _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7GXC _struct_keywords.text 'transcription factor, radiation damage, ligand, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP BCL6_HUMAN P41182 ? 1 ;ADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFC ILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE ; 5 2 PDB 7GXC 7GXC ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7GXC A 4 ? 128 ? P41182 5 ? 129 ? 5 129 2 2 7GXC D 1 ? 6 ? 7GXC 0 ? 5 ? 0 5 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7GXC GLY A 1 ? UNP P41182 ? ? 'expression tag' 2 1 1 7GXC PRO A 2 ? UNP P41182 ? ? 'expression tag' 3 2 1 7GXC GLY A 3 ? UNP P41182 ? ? 'expression tag' 4 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6450 ? 1 MORE -83 ? 1 'SSA (A^2)' 12870 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 33.8350000000 0.8660254038 -0.5000000000 0.0000000000 -58.6039390741 0.0000000000 0.0000000000 -1.0000000000 27.7550000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG A 12 ? ARG A 27 ? ARG A 13 ARG A 28 1 ? 16 HELX_P HELX_P2 AA2 HIS A 45 ? SER A 53 ? HIS A 46 SER A 54 1 ? 9 HELX_P HELX_P3 AA3 SER A 53 ? THR A 61 ? SER A 54 THR A 62 1 ? 9 HELX_P HELX_P4 AA4 LEU A 64 ? LEU A 68 ? LEU A 65 LEU A 69 5 ? 5 HELX_P HELX_P5 AA5 ASN A 78 ? SER A 92 ? ASN A 79 SER A 93 1 ? 15 HELX_P HELX_P6 AA6 ASN A 100 ? GLN A 112 ? ASN A 101 GLN A 113 1 ? 13 HELX_P HELX_P7 AA7 MET A 113 ? GLU A 128 ? MET A 114 GLU A 129 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ACE 1 C ? ? ? 1_555 B TRP 2 N A ? D ACE 0 D TRP 1 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B TRP 2 N B ? D ACE 0 D TRP 1 1_555 ? ? ? ? ? ? ? 1.335 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE B 1 ? TRP B 2 A ACE D 0 ? 1_555 TRP D 1 ? 1_555 . . TRP 16 ACE None 'Terminal acetylation' 2 ACE B 1 ? TRP B 2 B ACE D 0 ? 1_555 TRP D 1 ? 1_555 . . TRP 16 ACE None 'Terminal acetylation' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 40 ? ALA A 44 ? GLU A 41 ALA A 45 AA1 2 VAL A 33 ? VAL A 37 ? VAL A 34 VAL A 38 AA1 3 VAL A 70 ? ASN A 72 ? VAL A 71 ASN A 73 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU A 40 ? O GLU A 41 N VAL A 37 ? N VAL A 38 AA1 2 3 N VAL A 36 ? N VAL A 37 O ILE A 71 ? O ILE A 72 # _pdbx_entry_details.entry_id 7GXC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 40 ? ? 73.77 -17.57 2 1 GLN A 113 ? ? 61.51 60.51 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 334 ? G HOH . 2 1 A HOH 373 ? G HOH . 3 1 A HOH 446 ? G HOH . 4 1 A HOH 452 ? G HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 28.7948 -16.7036 24.2769 -0.0106 -0.0749 -0.0458 -0.0375 0.0304 -0.0174 1.0978 2.0883 1.9622 0.3807 -0.4194 1.2799 0.1339 -0.0790 -0.0549 -0.0408 0.1119 0.1005 0.2706 0.0098 -0.0022 'X-RAY DIFFRACTION' 2 ? refined 18.7776 -32.3235 1.8155 -0.1092 0.0948 -0.0020 -0.0306 -0.0159 -0.0972 0.3385 -0.0545 0.0000 0.0505 0.2738 0.1679 0.0086 -0.0075 -0.0011 -0.0040 0.0046 0.0176 -0.0080 0.0069 0.0052 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 6 A 129 '{A|6 - 129}' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 D 1 D 5 '{D|1 - 5}' ? ? ? ? ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 2 ? A GLY 1 2 1 Y 1 A PRO 3 ? A PRO 2 3 1 Y 1 A GLY 4 ? A GLY 3 4 1 Y 1 A ALA 5 ? A ALA 4 5 1 Y 1 A ASP 6 ? A ASP 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1ACB C2 C Y N 1 A1ACB N1 N N N 2 A1ACB C1 C Y N 3 A1ACB C3 C Y N 4 A1ACB C4 C Y N 5 A1ACB C5 C Y N 6 A1ACB N2 N N N 7 A1ACB C6 C Y N 8 A1ACB N3 N Y N 9 A1ACB C7 C Y N 10 A1ACB C8 C Y N 11 A1ACB C9 C N N 12 A1ACB O O N N 13 A1ACB C10 C N N 14 A1ACB C11 C Y N 15 A1ACB C12 C Y N 16 A1ACB CL CL N N 17 A1ACB N N Y N 18 A1ACB S S N N 19 A1ACB C C N N 20 A1ACB H1 H N N 21 A1ACB H2 H N N 22 A1ACB H3 H N N 23 A1ACB H4 H N N 24 A1ACB H5 H N N 25 A1ACB H6 H N N 26 A1ACB H7 H N N 27 A1ACB H8 H N N 28 A1ACB H9 H N N 29 A1ACB H10 H N N 30 A1ACB H11 H N N 31 ACE C C N N 32 ACE O O N N 33 ACE CH3 C N N 34 ACE H H N N 35 ACE H1 H N N 36 ACE H2 H N N 37 ACE H3 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CL CL CL N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 DMS S S N N 127 DMS O O N N 128 DMS C1 C N N 129 DMS C2 C N N 130 DMS H11 H N N 131 DMS H12 H N N 132 DMS H13 H N N 133 DMS H21 H N N 134 DMS H22 H N N 135 DMS H23 H N N 136 GLN N N N N 137 GLN CA C N S 138 GLN C C N N 139 GLN O O N N 140 GLN CB C N N 141 GLN CG C N N 142 GLN CD C N N 143 GLN OE1 O N N 144 GLN NE2 N N N 145 GLN OXT O N N 146 GLN H H N N 147 GLN H2 H N N 148 GLN HA H N N 149 GLN HB2 H N N 150 GLN HB3 H N N 151 GLN HG2 H N N 152 GLN HG3 H N N 153 GLN HE21 H N N 154 GLN HE22 H N N 155 GLN HXT H N N 156 GLU N N N N 157 GLU CA C N S 158 GLU C C N N 159 GLU O O N N 160 GLU CB C N N 161 GLU CG C N N 162 GLU CD C N N 163 GLU OE1 O N N 164 GLU OE2 O N N 165 GLU OXT O N N 166 GLU H H N N 167 GLU H2 H N N 168 GLU HA H N N 169 GLU HB2 H N N 170 GLU HB3 H N N 171 GLU HG2 H N N 172 GLU HG3 H N N 173 GLU HE2 H N N 174 GLU HXT H N N 175 GLY N N N N 176 GLY CA C N N 177 GLY C C N N 178 GLY O O N N 179 GLY OXT O N N 180 GLY H H N N 181 GLY H2 H N N 182 GLY HA2 H N N 183 GLY HA3 H N N 184 GLY HXT H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ACB N C2 doub Y N 1 A1ACB N C1 sing Y N 2 A1ACB S C1 sing N N 3 A1ACB S C sing N N 4 A1ACB C2 C3 sing Y N 5 A1ACB C1 N3 doub Y N 6 A1ACB C3 CL sing N N 7 A1ACB C3 C4 doub Y N 8 A1ACB N3 C4 sing Y N 9 A1ACB C4 N1 sing N N 10 A1ACB N1 C5 sing N N 11 A1ACB C5 C6 doub Y N 12 A1ACB C5 C12 sing Y N 13 A1ACB C6 C7 sing Y N 14 A1ACB C12 C11 doub Y N 15 A1ACB C7 C8 doub Y N 16 A1ACB C11 C8 sing Y N 17 A1ACB C11 C10 sing N N 18 A1ACB C8 N2 sing N N 19 A1ACB N2 C9 sing N N 20 A1ACB C10 C9 sing N N 21 A1ACB C9 O doub N N 22 A1ACB C2 H1 sing N N 23 A1ACB N1 H2 sing N N 24 A1ACB N2 H3 sing N N 25 A1ACB C6 H4 sing N N 26 A1ACB C7 H5 sing N N 27 A1ACB C10 H6 sing N N 28 A1ACB C10 H7 sing N N 29 A1ACB C12 H8 sing N N 30 A1ACB C H9 sing N N 31 A1ACB C H10 sing N N 32 A1ACB C H11 sing N N 33 ACE C O doub N N 34 ACE C CH3 sing N N 35 ACE C H sing N N 36 ACE CH3 H1 sing N N 37 ACE CH3 H2 sing N N 38 ACE CH3 H3 sing N N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 DMS S O doub N N 122 DMS S C1 sing N N 123 DMS S C2 sing N N 124 DMS C1 H11 sing N N 125 DMS C1 H12 sing N N 126 DMS C1 H13 sing N N 127 DMS C2 H21 sing N N 128 DMS C2 H22 sing N N 129 DMS C2 H23 sing N N 130 GLN N CA sing N N 131 GLN N H sing N N 132 GLN N H2 sing N N 133 GLN CA C sing N N 134 GLN CA CB sing N N 135 GLN CA HA sing N N 136 GLN C O doub N N 137 GLN C OXT sing N N 138 GLN CB CG sing N N 139 GLN CB HB2 sing N N 140 GLN CB HB3 sing N N 141 GLN CG CD sing N N 142 GLN CG HG2 sing N N 143 GLN CG HG3 sing N N 144 GLN CD OE1 doub N N 145 GLN CD NE2 sing N N 146 GLN NE2 HE21 sing N N 147 GLN NE2 HE22 sing N N 148 GLN OXT HXT sing N N 149 GLU N CA sing N N 150 GLU N H sing N N 151 GLU N H2 sing N N 152 GLU CA C sing N N 153 GLU CA CB sing N N 154 GLU CA HA sing N N 155 GLU C O doub N N 156 GLU C OXT sing N N 157 GLU CB CG sing N N 158 GLU CB HB2 sing N N 159 GLU CB HB3 sing N N 160 GLU CG CD sing N N 161 GLU CG HG2 sing N N 162 GLU CG HG3 sing N N 163 GLU CD OE1 doub N N 164 GLU CD OE2 sing N N 165 GLU OE2 HE2 sing N N 166 GLU OXT HXT sing N N 167 GLY N CA sing N N 168 GLY N H sing N N 169 GLY N H2 sing N N 170 GLY CA C sing N N 171 GLY CA HA2 sing N N 172 GLY CA HA3 sing N N 173 GLY C O doub N N 174 GLY C OXT sing N N 175 GLY OXT HXT sing N N 176 HIS N CA sing N N 177 HIS N H sing N N 178 HIS N H2 sing N N 179 HIS CA C sing N N 180 HIS CA CB sing N N 181 HIS CA HA sing N N 182 HIS C O doub N N 183 HIS C OXT sing N N 184 HIS CB CG sing N N 185 HIS CB HB2 sing N N 186 HIS CB HB3 sing N N 187 HIS CG ND1 sing Y N 188 HIS CG CD2 doub Y N 189 HIS ND1 CE1 doub Y N 190 HIS ND1 HD1 sing N N 191 HIS CD2 NE2 sing Y N 192 HIS CD2 HD2 sing N N 193 HIS CE1 NE2 sing Y N 194 HIS CE1 HE1 sing N N 195 HIS NE2 HE2 sing N N 196 HIS OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 ILE N CA sing N N 200 ILE N H sing N N 201 ILE N H2 sing N N 202 ILE CA C sing N N 203 ILE CA CB sing N N 204 ILE CA HA sing N N 205 ILE C O doub N N 206 ILE C OXT sing N N 207 ILE CB CG1 sing N N 208 ILE CB CG2 sing N N 209 ILE CB HB sing N N 210 ILE CG1 CD1 sing N N 211 ILE CG1 HG12 sing N N 212 ILE CG1 HG13 sing N N 213 ILE CG2 HG21 sing N N 214 ILE CG2 HG22 sing N N 215 ILE CG2 HG23 sing N N 216 ILE CD1 HD11 sing N N 217 ILE CD1 HD12 sing N N 218 ILE CD1 HD13 sing N N 219 ILE OXT HXT sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 SER N CA sing N N 325 SER N H sing N N 326 SER N H2 sing N N 327 SER CA C sing N N 328 SER CA CB sing N N 329 SER CA HA sing N N 330 SER C O doub N N 331 SER C OXT sing N N 332 SER CB OG sing N N 333 SER CB HB2 sing N N 334 SER CB HB3 sing N N 335 SER OG HG sing N N 336 SER OXT HXT sing N N 337 THR N CA sing N N 338 THR N H sing N N 339 THR N H2 sing N N 340 THR CA C sing N N 341 THR CA CB sing N N 342 THR CA HA sing N N 343 THR C O doub N N 344 THR C OXT sing N N 345 THR CB OG1 sing N N 346 THR CB CG2 sing N N 347 THR CB HB sing N N 348 THR OG1 HG1 sing N N 349 THR CG2 HG21 sing N N 350 THR CG2 HG22 sing N N 351 THR CG2 HG23 sing N N 352 THR OXT HXT sing N N 353 TRP N CA sing N N 354 TRP N H sing N N 355 TRP N H2 sing N N 356 TRP CA C sing N N 357 TRP CA CB sing N N 358 TRP CA HA sing N N 359 TRP C O doub N N 360 TRP C OXT sing N N 361 TRP CB CG sing N N 362 TRP CB HB2 sing N N 363 TRP CB HB3 sing N N 364 TRP CG CD1 doub Y N 365 TRP CG CD2 sing Y N 366 TRP CD1 NE1 sing Y N 367 TRP CD1 HD1 sing N N 368 TRP CD2 CE2 doub Y N 369 TRP CD2 CE3 sing Y N 370 TRP NE1 CE2 sing Y N 371 TRP NE1 HE1 sing N N 372 TRP CE2 CZ2 sing Y N 373 TRP CE3 CZ3 doub Y N 374 TRP CE3 HE3 sing N N 375 TRP CZ2 CH2 doub Y N 376 TRP CZ2 HZ2 sing N N 377 TRP CZ3 CH2 sing Y N 378 TRP CZ3 HZ3 sing N N 379 TRP CH2 HH2 sing N N 380 TRP OXT HXT sing N N 381 TYR N CA sing N N 382 TYR N H sing N N 383 TYR N H2 sing N N 384 TYR CA C sing N N 385 TYR CA CB sing N N 386 TYR CA HA sing N N 387 TYR C O doub N N 388 TYR C OXT sing N N 389 TYR CB CG sing N N 390 TYR CB HB2 sing N N 391 TYR CB HB3 sing N N 392 TYR CG CD1 doub Y N 393 TYR CG CD2 sing Y N 394 TYR CD1 CE1 sing Y N 395 TYR CD1 HD1 sing N N 396 TYR CD2 CE2 doub Y N 397 TYR CD2 HD2 sing N N 398 TYR CE1 CZ doub Y N 399 TYR CE1 HE1 sing N N 400 TYR CE2 CZ sing Y N 401 TYR CE2 HE2 sing N N 402 TYR CZ OH sing N N 403 TYR OH HH sing N N 404 TYR OXT HXT sing N N 405 VAL N CA sing N N 406 VAL N H sing N N 407 VAL N H2 sing N N 408 VAL CA C sing N N 409 VAL CA CB sing N N 410 VAL CA HA sing N N 411 VAL C O doub N N 412 VAL C OXT sing N N 413 VAL CB CG1 sing N N 414 VAL CB CG2 sing N N 415 VAL CB HB sing N N 416 VAL CG1 HG11 sing N N 417 VAL CG1 HG12 sing N N 418 VAL CG1 HG13 sing N N 419 VAL CG2 HG21 sing N N 420 VAL CG2 HG22 sing N N 421 VAL CG2 HG23 sing N N 422 VAL OXT HXT sing N N 423 # _pdbx_deposit_group.group_id G_1002070 _pdbx_deposit_group.group_title 'X-ray dose series of B-cell lymphoma 6 protein BTB domain in complex with ligand 8' _pdbx_deposit_group.group_description ;Crystal structures of B-cell lymphoma 6 protein BTB domain in complex with ligand 8 solved at increasing X-ray dose using Many Structures One Crystal (MSOX) crystallography. ; _pdbx_deposit_group.group_type undefined # _atom_sites.entry_id 7GXC _atom_sites.fract_transf_matrix[1][1] 0.014778 _atom_sites.fract_transf_matrix[1][2] 0.008532 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017064 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006005 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_