data_7GZZ # _entry.id 7GZZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7GZZ pdb_00007gzz 10.2210/pdb7gzz/pdb WWPDB D_1001406850 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7GZZ _pdbx_database_status.recvd_initial_deposition_date 2024-01-23 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.email frank.von-delft@diamond.ac.uk _pdbx_contact_author.name_first Frank _pdbx_contact_author.name_last 'von Delft' _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0378-0017 _pdbx_contact_author.name_mi ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Aschenbrenner, J.C.' 1 'Fearon, D.' 2 'Tomlinson, C.W.E.' 3 'Marples, P.G.' 4 'Fairhead, M.' 5 'Balcomb, B.H.' 6 'Chandran, A.V.' 7 'Godoy, A.S.' 8 'Koekemoer, L.' 9 'Lithgo, R.M.' 10 'Ni, X.' 11 'Thompson, W.' 12 'Wang, S.' 13 'Wild, C.' 14 'Williams, E.P.' 15 'Winokan, M.' 16 'Walsh, M.A.' 17 'von Delft, F.' 18 # _citation.id primary _citation.title 'Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Aschenbrenner, J.C.' ? 1 primary 'Fearon, D.' ? 2 primary 'Tomlinson, C.W.E.' ? 3 primary 'Marples, P.G.' ? 4 primary 'Fairhead, M.' ? 5 primary 'Balcomb, B.H.' ? 6 primary 'Chandran, A.V.' ? 7 primary 'Godoy, A.S.' ? 8 primary 'Koekemoer, L.' ? 9 primary 'Lithgo, R.M.' ? 10 primary 'Ni, X.' ? 11 primary 'Thompson, W.' ? 12 primary 'Wang, S.' ? 13 primary 'Wild, C.' ? 14 primary 'Williams, E.P.' ? 15 primary 'Winokan, M.' ? 16 primary 'Walsh, M.A.' ? 17 primary 'von Delft, F.' ? 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Papain-like protease nsp3' 18275.771 1 3.4.19.12,3.4.22.- ? ? ? 2 non-polymer syn ;2-[(4M)-4-(4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1H-pyrazol-1-yl]-N-methylacetamide ; 507.608 1 ? ? ? ? 3 water nat water 18.015 252 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-structural protein 3,nsp3,PL2-PRO,Papain-like proteinase,PL-PRO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFLE ; _entity_poly.pdbx_seq_one_letter_code_can ;GEVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;2-[(4M)-4-(4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1H-pyrazol-1-yl]-N-methylacetamide ; A1AK7 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 VAL n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 THR n 1 14 ASP n 1 15 ASN n 1 16 VAL n 1 17 TYR n 1 18 ILE n 1 19 LYS n 1 20 ASN n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 VAL n 1 42 TYR n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 ASN n 1 60 ALA n 1 61 MET n 1 62 GLN n 1 63 VAL n 1 64 GLU n 1 65 SER n 1 66 ASP n 1 67 ASP n 1 68 TYR n 1 69 ILE n 1 70 ALA n 1 71 THR n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 VAL n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 HIS n 1 92 CYS n 1 93 LEU n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 GLU n 1 115 ASN n 1 116 PHE n 1 117 ASN n 1 118 GLN n 1 119 HIS n 1 120 GLU n 1 121 VAL n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 PHE n 1 133 GLY n 1 134 ALA n 1 135 ASP n 1 136 PRO n 1 137 ILE n 1 138 HIS n 1 139 SER n 1 140 LEU n 1 141 ARG n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 ASP n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 THR n 1 150 ASN n 1 151 VAL n 1 152 TYR n 1 153 LEU n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 ASP n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 ASP n 1 163 LYS n 1 164 LEU n 1 165 VAL n 1 166 SER n 1 167 SER n 1 168 PHE n 1 169 LEU n 1 170 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 170 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1AK7 non-polymer . ;2-[(4M)-4-(4-{[(1S)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-1H-pyrazol-1-yl]-N-methylacetamide ; ? 'C25 H29 N7 O3 S' 507.608 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 VAL 3 3 ? ? ? A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 GLU 170 170 170 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AK7 1 201 201 A1AK7 LIG A . C 3 HOH 1 301 85 HOH HOH A . C 3 HOH 2 302 210 HOH HOH A . C 3 HOH 3 303 207 HOH HOH A . C 3 HOH 4 304 228 HOH HOH A . C 3 HOH 5 305 199 HOH HOH A . C 3 HOH 6 306 214 HOH HOH A . C 3 HOH 7 307 164 HOH HOH A . C 3 HOH 8 308 226 HOH HOH A . C 3 HOH 9 309 115 HOH HOH A . C 3 HOH 10 310 211 HOH HOH A . C 3 HOH 11 311 130 HOH HOH A . C 3 HOH 12 312 219 HOH HOH A . C 3 HOH 13 313 91 HOH HOH A . C 3 HOH 14 314 213 HOH HOH A . C 3 HOH 15 315 75 HOH HOH A . C 3 HOH 16 316 118 HOH HOH A . C 3 HOH 17 317 122 HOH HOH A . C 3 HOH 18 318 72 HOH HOH A . C 3 HOH 19 319 54 HOH HOH A . C 3 HOH 20 320 120 HOH HOH A . C 3 HOH 21 321 56 HOH HOH A . C 3 HOH 22 322 98 HOH HOH A . C 3 HOH 23 323 51 HOH HOH A . C 3 HOH 24 324 43 HOH HOH A . C 3 HOH 25 325 45 HOH HOH A . C 3 HOH 26 326 124 HOH HOH A . C 3 HOH 27 327 32 HOH HOH A . C 3 HOH 28 328 193 HOH HOH A . C 3 HOH 29 329 69 HOH HOH A . C 3 HOH 30 330 191 HOH HOH A . C 3 HOH 31 331 172 HOH HOH A . C 3 HOH 32 332 3 HOH HOH A . C 3 HOH 33 333 33 HOH HOH A . C 3 HOH 34 334 242 HOH HOH A . C 3 HOH 35 335 129 HOH HOH A . C 3 HOH 36 336 111 HOH HOH A . C 3 HOH 37 337 34 HOH HOH A . C 3 HOH 38 338 14 HOH HOH A . C 3 HOH 39 339 71 HOH HOH A . C 3 HOH 40 340 78 HOH HOH A . C 3 HOH 41 341 123 HOH HOH A . C 3 HOH 42 342 28 HOH HOH A . C 3 HOH 43 343 67 HOH HOH A . C 3 HOH 44 344 114 HOH HOH A . C 3 HOH 45 345 103 HOH HOH A . C 3 HOH 46 346 8 HOH HOH A . C 3 HOH 47 347 86 HOH HOH A . C 3 HOH 48 348 110 HOH HOH A . C 3 HOH 49 349 159 HOH HOH A . C 3 HOH 50 350 77 HOH HOH A . C 3 HOH 51 351 82 HOH HOH A . C 3 HOH 52 352 35 HOH HOH A . C 3 HOH 53 353 52 HOH HOH A . C 3 HOH 54 354 60 HOH HOH A . C 3 HOH 55 355 36 HOH HOH A . C 3 HOH 56 356 9 HOH HOH A . C 3 HOH 57 357 80 HOH HOH A . C 3 HOH 58 358 18 HOH HOH A . C 3 HOH 59 359 173 HOH HOH A . C 3 HOH 60 360 84 HOH HOH A . C 3 HOH 61 361 151 HOH HOH A . C 3 HOH 62 362 5 HOH HOH A . C 3 HOH 63 363 46 HOH HOH A . C 3 HOH 64 364 16 HOH HOH A . C 3 HOH 65 365 31 HOH HOH A . C 3 HOH 66 366 47 HOH HOH A . C 3 HOH 67 367 42 HOH HOH A . C 3 HOH 68 368 158 HOH HOH A . C 3 HOH 69 369 2 HOH HOH A . C 3 HOH 70 370 7 HOH HOH A . C 3 HOH 71 371 205 HOH HOH A . C 3 HOH 72 372 171 HOH HOH A . C 3 HOH 73 373 12 HOH HOH A . C 3 HOH 74 374 24 HOH HOH A . C 3 HOH 75 375 17 HOH HOH A . C 3 HOH 76 376 174 HOH HOH A . C 3 HOH 77 377 165 HOH HOH A . C 3 HOH 78 378 116 HOH HOH A . C 3 HOH 79 379 233 HOH HOH A . C 3 HOH 80 380 19 HOH HOH A . C 3 HOH 81 381 88 HOH HOH A . C 3 HOH 82 382 63 HOH HOH A . C 3 HOH 83 383 79 HOH HOH A . C 3 HOH 84 384 70 HOH HOH A . C 3 HOH 85 385 101 HOH HOH A . C 3 HOH 86 386 15 HOH HOH A . C 3 HOH 87 387 21 HOH HOH A . C 3 HOH 88 388 238 HOH HOH A . C 3 HOH 89 389 20 HOH HOH A . C 3 HOH 90 390 39 HOH HOH A . C 3 HOH 91 391 96 HOH HOH A . C 3 HOH 92 392 175 HOH HOH A . C 3 HOH 93 393 190 HOH HOH A . C 3 HOH 94 394 200 HOH HOH A . C 3 HOH 95 395 254 HOH HOH A . C 3 HOH 96 396 157 HOH HOH A . C 3 HOH 97 397 198 HOH HOH A . C 3 HOH 98 398 81 HOH HOH A . C 3 HOH 99 399 241 HOH HOH A . C 3 HOH 100 400 10 HOH HOH A . C 3 HOH 101 401 25 HOH HOH A . C 3 HOH 102 402 4 HOH HOH A . C 3 HOH 103 403 29 HOH HOH A . C 3 HOH 104 404 6 HOH HOH A . C 3 HOH 105 405 65 HOH HOH A . C 3 HOH 106 406 132 HOH HOH A . C 3 HOH 107 407 102 HOH HOH A . C 3 HOH 108 408 48 HOH HOH A . C 3 HOH 109 409 223 HOH HOH A . C 3 HOH 110 410 62 HOH HOH A . C 3 HOH 111 411 178 HOH HOH A . C 3 HOH 112 412 41 HOH HOH A . C 3 HOH 113 413 220 HOH HOH A . C 3 HOH 114 414 202 HOH HOH A . C 3 HOH 115 415 58 HOH HOH A . C 3 HOH 116 416 250 HOH HOH A . C 3 HOH 117 417 1 HOH HOH A . C 3 HOH 118 418 240 HOH HOH A . C 3 HOH 119 419 76 HOH HOH A . C 3 HOH 120 420 94 HOH HOH A . C 3 HOH 121 421 55 HOH HOH A . C 3 HOH 122 422 53 HOH HOH A . C 3 HOH 123 423 90 HOH HOH A . C 3 HOH 124 424 106 HOH HOH A . C 3 HOH 125 425 23 HOH HOH A . C 3 HOH 126 426 113 HOH HOH A . C 3 HOH 127 427 73 HOH HOH A . C 3 HOH 128 428 185 HOH HOH A . C 3 HOH 129 429 27 HOH HOH A . C 3 HOH 130 430 119 HOH HOH A . C 3 HOH 131 431 203 HOH HOH A . C 3 HOH 132 432 117 HOH HOH A . C 3 HOH 133 433 234 HOH HOH A . C 3 HOH 134 434 30 HOH HOH A . C 3 HOH 135 435 89 HOH HOH A . C 3 HOH 136 436 66 HOH HOH A . C 3 HOH 137 437 153 HOH HOH A . C 3 HOH 138 438 11 HOH HOH A . C 3 HOH 139 439 40 HOH HOH A . C 3 HOH 140 440 49 HOH HOH A . C 3 HOH 141 441 87 HOH HOH A . C 3 HOH 142 442 22 HOH HOH A . C 3 HOH 143 443 197 HOH HOH A . C 3 HOH 144 444 97 HOH HOH A . C 3 HOH 145 445 142 HOH HOH A . C 3 HOH 146 446 95 HOH HOH A . C 3 HOH 147 447 212 HOH HOH A . C 3 HOH 148 448 162 HOH HOH A . C 3 HOH 149 449 68 HOH HOH A . C 3 HOH 150 450 126 HOH HOH A . C 3 HOH 151 451 230 HOH HOH A . C 3 HOH 152 452 13 HOH HOH A . C 3 HOH 153 453 44 HOH HOH A . C 3 HOH 154 454 61 HOH HOH A . C 3 HOH 155 455 196 HOH HOH A . C 3 HOH 156 456 161 HOH HOH A . C 3 HOH 157 457 57 HOH HOH A . C 3 HOH 158 458 112 HOH HOH A . C 3 HOH 159 459 83 HOH HOH A . C 3 HOH 160 460 146 HOH HOH A . C 3 HOH 161 461 209 HOH HOH A . C 3 HOH 162 462 128 HOH HOH A . C 3 HOH 163 463 107 HOH HOH A . C 3 HOH 164 464 37 HOH HOH A . C 3 HOH 165 465 237 HOH HOH A . C 3 HOH 166 466 181 HOH HOH A . C 3 HOH 167 467 74 HOH HOH A . C 3 HOH 168 468 253 HOH HOH A . C 3 HOH 169 469 50 HOH HOH A . C 3 HOH 170 470 109 HOH HOH A . C 3 HOH 171 471 201 HOH HOH A . C 3 HOH 172 472 222 HOH HOH A . C 3 HOH 173 473 156 HOH HOH A . C 3 HOH 174 474 145 HOH HOH A . C 3 HOH 175 475 154 HOH HOH A . C 3 HOH 176 476 155 HOH HOH A . C 3 HOH 177 477 208 HOH HOH A . C 3 HOH 178 478 215 HOH HOH A . C 3 HOH 179 479 136 HOH HOH A . C 3 HOH 180 480 26 HOH HOH A . C 3 HOH 181 481 149 HOH HOH A . C 3 HOH 182 482 121 HOH HOH A . C 3 HOH 183 483 176 HOH HOH A . C 3 HOH 184 484 168 HOH HOH A . C 3 HOH 185 485 243 HOH HOH A . C 3 HOH 186 486 59 HOH HOH A . C 3 HOH 187 487 177 HOH HOH A . C 3 HOH 188 488 167 HOH HOH A . C 3 HOH 189 489 231 HOH HOH A . C 3 HOH 190 490 135 HOH HOH A . C 3 HOH 191 491 186 HOH HOH A . C 3 HOH 192 492 127 HOH HOH A . C 3 HOH 193 493 139 HOH HOH A . C 3 HOH 194 494 194 HOH HOH A . C 3 HOH 195 495 247 HOH HOH A . C 3 HOH 196 496 180 HOH HOH A . C 3 HOH 197 497 143 HOH HOH A . C 3 HOH 198 498 140 HOH HOH A . C 3 HOH 199 499 235 HOH HOH A . C 3 HOH 200 500 160 HOH HOH A . C 3 HOH 201 501 244 HOH HOH A . C 3 HOH 202 502 170 HOH HOH A . C 3 HOH 203 503 221 HOH HOH A . C 3 HOH 204 504 218 HOH HOH A . C 3 HOH 205 505 144 HOH HOH A . C 3 HOH 206 506 206 HOH HOH A . C 3 HOH 207 507 232 HOH HOH A . C 3 HOH 208 508 99 HOH HOH A . C 3 HOH 209 509 125 HOH HOH A . C 3 HOH 210 510 184 HOH HOH A . C 3 HOH 211 511 100 HOH HOH A . C 3 HOH 212 512 134 HOH HOH A . C 3 HOH 213 513 252 HOH HOH A . C 3 HOH 214 514 138 HOH HOH A . C 3 HOH 215 515 133 HOH HOH A . C 3 HOH 216 516 183 HOH HOH A . C 3 HOH 217 517 192 HOH HOH A . C 3 HOH 218 518 131 HOH HOH A . C 3 HOH 219 519 141 HOH HOH A . C 3 HOH 220 520 245 HOH HOH A . C 3 HOH 221 521 188 HOH HOH A . C 3 HOH 222 522 169 HOH HOH A . C 3 HOH 223 523 163 HOH HOH A . C 3 HOH 224 524 251 HOH HOH A . C 3 HOH 225 525 104 HOH HOH A . C 3 HOH 226 526 249 HOH HOH A . C 3 HOH 227 527 152 HOH HOH A . C 3 HOH 228 528 195 HOH HOH A . C 3 HOH 229 529 92 HOH HOH A . C 3 HOH 230 530 108 HOH HOH A . C 3 HOH 231 531 182 HOH HOH A . C 3 HOH 232 532 217 HOH HOH A . C 3 HOH 233 533 64 HOH HOH A . C 3 HOH 234 534 147 HOH HOH A . C 3 HOH 235 535 225 HOH HOH A . C 3 HOH 236 536 38 HOH HOH A . C 3 HOH 237 537 248 HOH HOH A . C 3 HOH 238 538 93 HOH HOH A . C 3 HOH 239 539 150 HOH HOH A . C 3 HOH 240 540 204 HOH HOH A . C 3 HOH 241 541 179 HOH HOH A . C 3 HOH 242 542 236 HOH HOH A . C 3 HOH 243 543 187 HOH HOH A . C 3 HOH 244 544 224 HOH HOH A . C 3 HOH 245 545 137 HOH HOH A . C 3 HOH 246 546 239 HOH HOH A . C 3 HOH 247 547 166 HOH HOH A . C 3 HOH 248 548 227 HOH HOH A . C 3 HOH 249 549 148 HOH HOH A . C 3 HOH 250 550 229 HOH HOH A . C 3 HOH 251 551 216 HOH HOH A . C 3 HOH 252 552 189 HOH HOH A . # loop_ _software.pdbx_ordinal _software.classification _software.name _software.version _software.date _software.citation_id _software.type _software.location _software.language 1 refinement BUSTER 2.10.4 2023-06-14 ? ? ? ? 2 'data scaling' Aimless . ? ? ? ? ? 3 phasing PHASER . ? ? ? ? ? 4 'data reduction' XDS . ? ? ? ? ? # _cell.entry_id 7GZZ _cell.length_a 38.311 _cell.length_b 33.142 _cell.length_c 64.407 _cell.angle_alpha 90 _cell.angle_beta 101.59 _cell.angle_gamma 90 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7GZZ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.entry_id 7GZZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_percent_sol 43.88 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '0.1 M MES (pH 6.50) and 30 % w/v PEG 4000' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS EIGER2 XE 9M' _diffrn_detector.pdbx_collection_date 2023-07-07 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9212 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.9212 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7GZZ _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 63.094 _reflns.d_resolution_high 1.166 _reflns.number_obs 38838 _reflns.percent_possible_obs 71.4 _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_netI_over_sigmaI 15.1 _reflns.pdbx_redundancy 4.9 _reflns.pdbx_Rrim_I_all 0.052 _reflns.pdbx_Rpim_I_all 0.022 _reflns.pdbx_number_measured_all 189581 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.166 _reflns_shell.d_res_low 1.276 _reflns_shell.number_measured_all 3709 _reflns_shell.number_unique_obs 1942 _reflns_shell.Rmerge_I_obs 0.244 _reflns_shell.pdbx_redundancy 1.9 _reflns_shell.percent_possible_obs 15.2 _reflns_shell.pdbx_netI_over_sigmaI_obs 2.1 _reflns_shell.pdbx_Rrim_I_all 0.316 _reflns_shell.pdbx_Rpim_I_all 0.198 _reflns_shell.percent_possible_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? # _refine.entry_id 7GZZ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.166 _refine.ls_d_res_low 63.09 _refine.ls_percent_reflns_obs 71.5 _refine.ls_number_reflns_obs 38838 _refine.ls_number_reflns_R_free 1977 _refine.ls_R_factor_obs 0.1803 _refine.ls_R_factor_R_work 0.1797 _refine.ls_R_factor_R_free 0.1920 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.B_iso_mean 13.51 _refine.aniso_B[1][1] 0.2827 _refine.aniso_B[2][2] -0.678 _refine.aniso_B[3][3] 0.3953 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0.1524 _refine.aniso_B[2][3] 0 _refine.pdbx_overall_SU_R_Blow_DPI 0.056 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.054 _refine.overall_SU_R_Cruickshank_DPI 0.052 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.05 _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.pdbx_diffrn_id 1 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? # _refine_analyze.entry_id 7GZZ _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1266 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 252 _refine_hist.number_atoms_total 1554 _refine_hist.d_res_high 1.166 _refine_hist.d_res_low 63.09 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target 'X-RAY DIFFRACTION' t_bond_d 1357 2 HARMONIC 0.013 ? 'X-RAY DIFFRACTION' t_angle_deg 1855 2 HARMONIC 1.2 ? 'X-RAY DIFFRACTION' t_dihedral_angle_d 462 2 SINUSOIDAL ? ? 'X-RAY DIFFRACTION' t_gen_planes 262 5 HARMONIC ? ? 'X-RAY DIFFRACTION' t_it 1357 10 HARMONIC ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 171 5 SEMIHARMONIC ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1452 4 SEMIHARMONIC ? ? 'X-RAY DIFFRACTION' t_omega_torsion ? ? ? 5.03 ? 'X-RAY DIFFRACTION' t_other_torsion ? ? ? 15.33 ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.166 _refine_ls_shell.d_res_low 1.23 _refine_ls_shell.percent_reflns_obs 9.52 _refine_ls_shell.number_reflns_obs 777 _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_obs 0.2352 _refine_ls_shell.R_factor_R_work 0.2362 _refine_ls_shell.R_factor_R_free 0.2097 _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 7GZZ _struct.title 'Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011184-001' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7GZZ _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, Hydrolase' _struct_keywords.text 'ASAP, AViDD, Diamond I04-1, crystallographic fragment screening, PanDDA, XChemExplorer, SARS-CoV-2, VIRAL PROTEIN, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSC VLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLY DKLVSSFLE ; _struct_ref.pdbx_align_begin 1024 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7GZZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0DTD1 _struct_ref_seq.db_align_beg 1024 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1192 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 170 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7GZZ _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P0DTD1 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 22 ? LYS A 31 ? ASP A 22 LYS A 31 1 ? 10 HELX_P HELX_P2 AA2 GLY A 47 ? THR A 57 ? GLY A 47 THR A 57 1 ? 11 HELX_P HELX_P3 AA3 ASN A 59 ? GLY A 73 ? ASN A 59 GLY A 73 1 ? 15 HELX_P HELX_P4 AA4 ASN A 99 ? GLY A 103 ? ASN A 99 GLY A 103 5 ? 5 HELX_P HELX_P5 AA5 GLN A 107 ? ASN A 115 ? GLN A 107 ASN A 115 1 ? 9 HELX_P HELX_P6 AA6 PHE A 116 ? HIS A 119 ? PHE A 116 HIS A 119 5 ? 4 HELX_P HELX_P7 AA7 ALA A 129 ? GLY A 133 ? ALA A 129 GLY A 133 5 ? 5 HELX_P HELX_P8 AA8 ASP A 135 ? VAL A 147 ? ASP A 135 VAL A 147 1 ? 13 HELX_P HELX_P9 AA9 ASP A 157 ? LEU A 169 ? ASP A 157 LEU A 169 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 10 ? THR A 13 ? LEU A 10 THR A 13 AA1 2 VAL A 16 ? ASN A 20 ? VAL A 16 ASN A 20 AA1 3 ASN A 150 ? VAL A 155 ? ASN A 150 VAL A 155 AA1 4 VAL A 121 ? ALA A 124 ? VAL A 121 ALA A 124 AA2 1 VAL A 34 ? ALA A 38 ? VAL A 34 ALA A 38 AA2 2 HIS A 91 ? VAL A 95 ? HIS A 91 VAL A 95 AA2 3 SER A 80 ? SER A 84 ? SER A 80 SER A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 10 ? N LEU A 10 O ILE A 18 ? O ILE A 18 AA1 2 3 N TYR A 17 ? N TYR A 17 O LEU A 153 ? O LEU A 153 AA1 3 4 O TYR A 152 ? O TYR A 152 N ALA A 124 ? N ALA A 124 AA2 1 2 N ASN A 37 ? N ASN A 37 O VAL A 95 ? O VAL A 95 AA2 2 3 O CYS A 92 ? O CYS A 92 N LEU A 83 ? N LEU A 83 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 158 ? ? O A HOH 301 ? ? 1.97 2 1 O A HOH 361 ? ? O A HOH 544 ? ? 2.08 3 1 O A LYS 31 ? ? O A HOH 302 ? ? 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 86 ? ? 57.51 -133.37 2 1 ASP A 157 ? ? -169.12 113.87 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id A1AK7 _pdbx_struct_mod_residue.label_seq_id ? _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A1AK7 _pdbx_struct_mod_residue.auth_seq_id 201 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LIG _pdbx_struct_mod_residue.details 1 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.T[1][1] -0.0016 _pdbx_refine_tls.T[2][2] -0.0312 _pdbx_refine_tls.T[3][3] -0.0035 _pdbx_refine_tls.T[1][2] 0.001 _pdbx_refine_tls.T[1][3] -0.0004 _pdbx_refine_tls.T[2][3] 0.0008 _pdbx_refine_tls.L[1][1] 0.8828 _pdbx_refine_tls.L[2][2] 0.4286 _pdbx_refine_tls.L[3][3] 0.3009 _pdbx_refine_tls.L[1][2] 0.0532 _pdbx_refine_tls.L[1][3] 0.1211 _pdbx_refine_tls.L[2][3] 0.0771 _pdbx_refine_tls.S[1][1] 0.0447 _pdbx_refine_tls.S[1][2] -0.0359 _pdbx_refine_tls.S[1][3] -0.0065 _pdbx_refine_tls.S[2][1] -0.0359 _pdbx_refine_tls.S[2][2] -0.0255 _pdbx_refine_tls.S[2][3] 0.0166 _pdbx_refine_tls.S[3][1] -0.0065 _pdbx_refine_tls.S[3][2] 0.0166 _pdbx_refine_tls.S[3][3] -0.0191 _pdbx_refine_tls.origin_x 3.6717 _pdbx_refine_tls.origin_y -7.0841 _pdbx_refine_tls.origin_z 15.8691 _pdbx_refine_tls.details ? _pdbx_refine_tls.method ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id 1 1 'X-RAY DIFFRACTION' . A 4 . A 170 . '{ A|* }' ? ? ? ? 2 1 'X-RAY DIFFRACTION' . A 201 . A 201 . '{ A|* }' ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A VAL 3 ? A VAL 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1AK7 N1 N Y N 1 A1AK7 N3 N Y N 2 A1AK7 C4 C Y N 3 A1AK7 C5 C Y N 4 A1AK7 C6 C Y N 5 A1AK7 C7 C Y N 6 A1AK7 C8 C Y N 7 A1AK7 C10 C Y N 8 A1AK7 C13 C Y N 9 A1AK7 C15 C Y N 10 A1AK7 C17 C N N 11 A1AK7 C20 C N N 12 A1AK7 C21 C N N 13 A1AK7 C22 C Y N 14 A1AK7 C24 C Y N 15 A1AK7 O2 O N N 16 A1AK7 S S N N 17 A1AK7 O1 O N N 18 A1AK7 C16 C N N 19 A1AK7 C18 C N N 20 A1AK7 C12 C Y N 21 A1AK7 C11 C Y N 22 A1AK7 C14 C Y N 23 A1AK7 C9 C N S 24 A1AK7 C19 C N N 25 A1AK7 N2 N N N 26 A1AK7 N4 N Y N 27 A1AK7 C23 C Y N 28 A1AK7 N5 N Y N 29 A1AK7 C3 C Y N 30 A1AK7 N6 N Y N 31 A1AK7 C2 C N N 32 A1AK7 C1 C N N 33 A1AK7 O O N N 34 A1AK7 N N N N 35 A1AK7 C C N N 36 A1AK7 H9 H N N 37 A1AK7 H13 H N N 38 A1AK7 H16 H N N 39 A1AK7 H17 H N N 40 A1AK7 H22 H N N 41 A1AK7 H23 H N N 42 A1AK7 H21 H N N 43 A1AK7 H25 H N N 44 A1AK7 H24 H N N 45 A1AK7 H26 H N N 46 A1AK7 H27 H N N 47 A1AK7 H28 H N N 48 A1AK7 H15 H N N 49 A1AK7 H14 H N N 50 A1AK7 H18 H N N 51 A1AK7 H19 H N N 52 A1AK7 H12 H N N 53 A1AK7 H11 H N N 54 A1AK7 H H N N 55 A1AK7 H20 H N N 56 A1AK7 H10 H N N 57 A1AK7 H1 H N N 58 A1AK7 H8 H N N 59 A1AK7 H6 H N N 60 A1AK7 H7 H N N 61 A1AK7 H5 H N N 62 A1AK7 H2 H N N 63 A1AK7 H4 H N N 64 A1AK7 H3 H N N 65 ALA N N N N 66 ALA CA C N S 67 ALA C C N N 68 ALA O O N N 69 ALA CB C N N 70 ALA OXT O N N 71 ALA H H N N 72 ALA H2 H N N 73 ALA HA H N N 74 ALA HB1 H N N 75 ALA HB2 H N N 76 ALA HB3 H N N 77 ALA HXT H N N 78 ARG N N N N 79 ARG CA C N S 80 ARG C C N N 81 ARG O O N N 82 ARG CB C N N 83 ARG CG C N N 84 ARG CD C N N 85 ARG NE N N N 86 ARG CZ C N N 87 ARG NH1 N N N 88 ARG NH2 N N N 89 ARG OXT O N N 90 ARG H H N N 91 ARG H2 H N N 92 ARG HA H N N 93 ARG HB2 H N N 94 ARG HB3 H N N 95 ARG HG2 H N N 96 ARG HG3 H N N 97 ARG HD2 H N N 98 ARG HD3 H N N 99 ARG HE H N N 100 ARG HH11 H N N 101 ARG HH12 H N N 102 ARG HH21 H N N 103 ARG HH22 H N N 104 ARG HXT H N N 105 ASN N N N N 106 ASN CA C N S 107 ASN C C N N 108 ASN O O N N 109 ASN CB C N N 110 ASN CG C N N 111 ASN OD1 O N N 112 ASN ND2 N N N 113 ASN OXT O N N 114 ASN H H N N 115 ASN H2 H N N 116 ASN HA H N N 117 ASN HB2 H N N 118 ASN HB3 H N N 119 ASN HD21 H N N 120 ASN HD22 H N N 121 ASN HXT H N N 122 ASP N N N N 123 ASP CA C N S 124 ASP C C N N 125 ASP O O N N 126 ASP CB C N N 127 ASP CG C N N 128 ASP OD1 O N N 129 ASP OD2 O N N 130 ASP OXT O N N 131 ASP H H N N 132 ASP H2 H N N 133 ASP HA H N N 134 ASP HB2 H N N 135 ASP HB3 H N N 136 ASP HD2 H N N 137 ASP HXT H N N 138 CYS N N N N 139 CYS CA C N R 140 CYS C C N N 141 CYS O O N N 142 CYS CB C N N 143 CYS SG S N N 144 CYS OXT O N N 145 CYS H H N N 146 CYS H2 H N N 147 CYS HA H N N 148 CYS HB2 H N N 149 CYS HB3 H N N 150 CYS HG H N N 151 CYS HXT H N N 152 GLN N N N N 153 GLN CA C N S 154 GLN C C N N 155 GLN O O N N 156 GLN CB C N N 157 GLN CG C N N 158 GLN CD C N N 159 GLN OE1 O N N 160 GLN NE2 N N N 161 GLN OXT O N N 162 GLN H H N N 163 GLN H2 H N N 164 GLN HA H N N 165 GLN HB2 H N N 166 GLN HB3 H N N 167 GLN HG2 H N N 168 GLN HG3 H N N 169 GLN HE21 H N N 170 GLN HE22 H N N 171 GLN HXT H N N 172 GLU N N N N 173 GLU CA C N S 174 GLU C C N N 175 GLU O O N N 176 GLU CB C N N 177 GLU CG C N N 178 GLU CD C N N 179 GLU OE1 O N N 180 GLU OE2 O N N 181 GLU OXT O N N 182 GLU H H N N 183 GLU H2 H N N 184 GLU HA H N N 185 GLU HB2 H N N 186 GLU HB3 H N N 187 GLU HG2 H N N 188 GLU HG3 H N N 189 GLU HE2 H N N 190 GLU HXT H N N 191 GLY N N N N 192 GLY CA C N N 193 GLY C C N N 194 GLY O O N N 195 GLY OXT O N N 196 GLY H H N N 197 GLY H2 H N N 198 GLY HA2 H N N 199 GLY HA3 H N N 200 GLY HXT H N N 201 HIS N N N N 202 HIS CA C N S 203 HIS C C N N 204 HIS O O N N 205 HIS CB C N N 206 HIS CG C Y N 207 HIS ND1 N Y N 208 HIS CD2 C Y N 209 HIS CE1 C Y N 210 HIS NE2 N Y N 211 HIS OXT O N N 212 HIS H H N N 213 HIS H2 H N N 214 HIS HA H N N 215 HIS HB2 H N N 216 HIS HB3 H N N 217 HIS HD1 H N N 218 HIS HD2 H N N 219 HIS HE1 H N N 220 HIS HE2 H N N 221 HIS HXT H N N 222 HOH O O N N 223 HOH H1 H N N 224 HOH H2 H N N 225 ILE N N N N 226 ILE CA C N S 227 ILE C C N N 228 ILE O O N N 229 ILE CB C N S 230 ILE CG1 C N N 231 ILE CG2 C N N 232 ILE CD1 C N N 233 ILE OXT O N N 234 ILE H H N N 235 ILE H2 H N N 236 ILE HA H N N 237 ILE HB H N N 238 ILE HG12 H N N 239 ILE HG13 H N N 240 ILE HG21 H N N 241 ILE HG22 H N N 242 ILE HG23 H N N 243 ILE HD11 H N N 244 ILE HD12 H N N 245 ILE HD13 H N N 246 ILE HXT H N N 247 LEU N N N N 248 LEU CA C N S 249 LEU C C N N 250 LEU O O N N 251 LEU CB C N N 252 LEU CG C N N 253 LEU CD1 C N N 254 LEU CD2 C N N 255 LEU OXT O N N 256 LEU H H N N 257 LEU H2 H N N 258 LEU HA H N N 259 LEU HB2 H N N 260 LEU HB3 H N N 261 LEU HG H N N 262 LEU HD11 H N N 263 LEU HD12 H N N 264 LEU HD13 H N N 265 LEU HD21 H N N 266 LEU HD22 H N N 267 LEU HD23 H N N 268 LEU HXT H N N 269 LYS N N N N 270 LYS CA C N S 271 LYS C C N N 272 LYS O O N N 273 LYS CB C N N 274 LYS CG C N N 275 LYS CD C N N 276 LYS CE C N N 277 LYS NZ N N N 278 LYS OXT O N N 279 LYS H H N N 280 LYS H2 H N N 281 LYS HA H N N 282 LYS HB2 H N N 283 LYS HB3 H N N 284 LYS HG2 H N N 285 LYS HG3 H N N 286 LYS HD2 H N N 287 LYS HD3 H N N 288 LYS HE2 H N N 289 LYS HE3 H N N 290 LYS HZ1 H N N 291 LYS HZ2 H N N 292 LYS HZ3 H N N 293 LYS HXT H N N 294 MET N N N N 295 MET CA C N S 296 MET C C N N 297 MET O O N N 298 MET CB C N N 299 MET CG C N N 300 MET SD S N N 301 MET CE C N N 302 MET OXT O N N 303 MET H H N N 304 MET H2 H N N 305 MET HA H N N 306 MET HB2 H N N 307 MET HB3 H N N 308 MET HG2 H N N 309 MET HG3 H N N 310 MET HE1 H N N 311 MET HE2 H N N 312 MET HE3 H N N 313 MET HXT H N N 314 PHE N N N N 315 PHE CA C N S 316 PHE C C N N 317 PHE O O N N 318 PHE CB C N N 319 PHE CG C Y N 320 PHE CD1 C Y N 321 PHE CD2 C Y N 322 PHE CE1 C Y N 323 PHE CE2 C Y N 324 PHE CZ C Y N 325 PHE OXT O N N 326 PHE H H N N 327 PHE H2 H N N 328 PHE HA H N N 329 PHE HB2 H N N 330 PHE HB3 H N N 331 PHE HD1 H N N 332 PHE HD2 H N N 333 PHE HE1 H N N 334 PHE HE2 H N N 335 PHE HZ H N N 336 PHE HXT H N N 337 PRO N N N N 338 PRO CA C N S 339 PRO C C N N 340 PRO O O N N 341 PRO CB C N N 342 PRO CG C N N 343 PRO CD C N N 344 PRO OXT O N N 345 PRO H H N N 346 PRO HA H N N 347 PRO HB2 H N N 348 PRO HB3 H N N 349 PRO HG2 H N N 350 PRO HG3 H N N 351 PRO HD2 H N N 352 PRO HD3 H N N 353 PRO HXT H N N 354 SER N N N N 355 SER CA C N S 356 SER C C N N 357 SER O O N N 358 SER CB C N N 359 SER OG O N N 360 SER OXT O N N 361 SER H H N N 362 SER H2 H N N 363 SER HA H N N 364 SER HB2 H N N 365 SER HB3 H N N 366 SER HG H N N 367 SER HXT H N N 368 THR N N N N 369 THR CA C N S 370 THR C C N N 371 THR O O N N 372 THR CB C N R 373 THR OG1 O N N 374 THR CG2 C N N 375 THR OXT O N N 376 THR H H N N 377 THR H2 H N N 378 THR HA H N N 379 THR HB H N N 380 THR HG1 H N N 381 THR HG21 H N N 382 THR HG22 H N N 383 THR HG23 H N N 384 THR HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AK7 C N sing N N 1 A1AK7 N C1 sing N N 2 A1AK7 O C1 doub N N 3 A1AK7 C1 C2 sing N N 4 A1AK7 C2 N1 sing N N 5 A1AK7 N1 C3 sing Y N 6 A1AK7 C3 C4 doub Y N 7 A1AK7 C4 C5 sing N N 8 A1AK7 C5 C6 doub Y N 9 A1AK7 C6 C7 sing Y N 10 A1AK7 C7 C8 doub Y N 11 A1AK7 C8 N2 sing N N 12 A1AK7 N2 C9 sing N N 13 A1AK7 C9 C10 sing N N 14 A1AK7 C10 C11 doub Y N 15 A1AK7 C11 C12 sing Y N 16 A1AK7 C12 C13 doub Y N 17 A1AK7 C13 C14 sing Y N 18 A1AK7 C15 C14 doub Y N 19 A1AK7 C10 C15 sing Y N 20 A1AK7 C14 S sing N N 21 A1AK7 O1 S doub N N 22 A1AK7 S O2 doub N N 23 A1AK7 C16 S sing N N 24 A1AK7 C17 C16 sing N N 25 A1AK7 C18 C17 sing N N 26 A1AK7 C13 C18 sing N N 27 A1AK7 C19 C9 sing N N 28 A1AK7 C20 C19 sing N N 29 A1AK7 C21 C19 sing N N 30 A1AK7 N3 C8 sing Y N 31 A1AK7 C22 N3 doub Y N 32 A1AK7 N4 C22 sing Y N 33 A1AK7 C23 N4 doub Y N 34 A1AK7 C7 C23 sing Y N 35 A1AK7 N5 C23 sing Y N 36 A1AK7 C5 N5 sing Y N 37 A1AK7 C24 C4 sing Y N 38 A1AK7 N6 C24 doub Y N 39 A1AK7 N1 N6 sing Y N 40 A1AK7 C6 H9 sing N N 41 A1AK7 C15 H13 sing N N 42 A1AK7 C17 H16 sing N N 43 A1AK7 C17 H17 sing N N 44 A1AK7 C20 H22 sing N N 45 A1AK7 C20 H23 sing N N 46 A1AK7 C20 H21 sing N N 47 A1AK7 C21 H25 sing N N 48 A1AK7 C21 H24 sing N N 49 A1AK7 C21 H26 sing N N 50 A1AK7 C22 H27 sing N N 51 A1AK7 C24 H28 sing N N 52 A1AK7 C16 H15 sing N N 53 A1AK7 C16 H14 sing N N 54 A1AK7 C18 H18 sing N N 55 A1AK7 C18 H19 sing N N 56 A1AK7 C12 H12 sing N N 57 A1AK7 C11 H11 sing N N 58 A1AK7 C9 H sing N N 59 A1AK7 C19 H20 sing N N 60 A1AK7 N2 H10 sing N N 61 A1AK7 N5 H1 sing N N 62 A1AK7 C3 H8 sing N N 63 A1AK7 C2 H6 sing N N 64 A1AK7 C2 H7 sing N N 65 A1AK7 N H5 sing N N 66 A1AK7 C H2 sing N N 67 A1AK7 C H4 sing N N 68 A1AK7 C H3 sing N N 69 ALA N CA sing N N 70 ALA N H sing N N 71 ALA N H2 sing N N 72 ALA CA C sing N N 73 ALA CA CB sing N N 74 ALA CA HA sing N N 75 ALA C O doub N N 76 ALA C OXT sing N N 77 ALA CB HB1 sing N N 78 ALA CB HB2 sing N N 79 ALA CB HB3 sing N N 80 ALA OXT HXT sing N N 81 ARG N CA sing N N 82 ARG N H sing N N 83 ARG N H2 sing N N 84 ARG CA C sing N N 85 ARG CA CB sing N N 86 ARG CA HA sing N N 87 ARG C O doub N N 88 ARG C OXT sing N N 89 ARG CB CG sing N N 90 ARG CB HB2 sing N N 91 ARG CB HB3 sing N N 92 ARG CG CD sing N N 93 ARG CG HG2 sing N N 94 ARG CG HG3 sing N N 95 ARG CD NE sing N N 96 ARG CD HD2 sing N N 97 ARG CD HD3 sing N N 98 ARG NE CZ sing N N 99 ARG NE HE sing N N 100 ARG CZ NH1 sing N N 101 ARG CZ NH2 doub N N 102 ARG NH1 HH11 sing N N 103 ARG NH1 HH12 sing N N 104 ARG NH2 HH21 sing N N 105 ARG NH2 HH22 sing N N 106 ARG OXT HXT sing N N 107 ASN N CA sing N N 108 ASN N H sing N N 109 ASN N H2 sing N N 110 ASN CA C sing N N 111 ASN CA CB sing N N 112 ASN CA HA sing N N 113 ASN C O doub N N 114 ASN C OXT sing N N 115 ASN CB CG sing N N 116 ASN CB HB2 sing N N 117 ASN CB HB3 sing N N 118 ASN CG OD1 doub N N 119 ASN CG ND2 sing N N 120 ASN ND2 HD21 sing N N 121 ASN ND2 HD22 sing N N 122 ASN OXT HXT sing N N 123 ASP N CA sing N N 124 ASP N H sing N N 125 ASP N H2 sing N N 126 ASP CA C sing N N 127 ASP CA CB sing N N 128 ASP CA HA sing N N 129 ASP C O doub N N 130 ASP C OXT sing N N 131 ASP CB CG sing N N 132 ASP CB HB2 sing N N 133 ASP CB HB3 sing N N 134 ASP CG OD1 doub N N 135 ASP CG OD2 sing N N 136 ASP OD2 HD2 sing N N 137 ASP OXT HXT sing N N 138 CYS N CA sing N N 139 CYS N H sing N N 140 CYS N H2 sing N N 141 CYS CA C sing N N 142 CYS CA CB sing N N 143 CYS CA HA sing N N 144 CYS C O doub N N 145 CYS C OXT sing N N 146 CYS CB SG sing N N 147 CYS CB HB2 sing N N 148 CYS CB HB3 sing N N 149 CYS SG HG sing N N 150 CYS OXT HXT sing N N 151 GLN N CA sing N N 152 GLN N H sing N N 153 GLN N H2 sing N N 154 GLN CA C sing N N 155 GLN CA CB sing N N 156 GLN CA HA sing N N 157 GLN C O doub N N 158 GLN C OXT sing N N 159 GLN CB CG sing N N 160 GLN CB HB2 sing N N 161 GLN CB HB3 sing N N 162 GLN CG CD sing N N 163 GLN CG HG2 sing N N 164 GLN CG HG3 sing N N 165 GLN CD OE1 doub N N 166 GLN CD NE2 sing N N 167 GLN NE2 HE21 sing N N 168 GLN NE2 HE22 sing N N 169 GLN OXT HXT sing N N 170 GLU N CA sing N N 171 GLU N H sing N N 172 GLU N H2 sing N N 173 GLU CA C sing N N 174 GLU CA CB sing N N 175 GLU CA HA sing N N 176 GLU C O doub N N 177 GLU C OXT sing N N 178 GLU CB CG sing N N 179 GLU CB HB2 sing N N 180 GLU CB HB3 sing N N 181 GLU CG CD sing N N 182 GLU CG HG2 sing N N 183 GLU CG HG3 sing N N 184 GLU CD OE1 doub N N 185 GLU CD OE2 sing N N 186 GLU OE2 HE2 sing N N 187 GLU OXT HXT sing N N 188 GLY N CA sing N N 189 GLY N H sing N N 190 GLY N H2 sing N N 191 GLY CA C sing N N 192 GLY CA HA2 sing N N 193 GLY CA HA3 sing N N 194 GLY C O doub N N 195 GLY C OXT sing N N 196 GLY OXT HXT sing N N 197 HIS N CA sing N N 198 HIS N H sing N N 199 HIS N H2 sing N N 200 HIS CA C sing N N 201 HIS CA CB sing N N 202 HIS CA HA sing N N 203 HIS C O doub N N 204 HIS C OXT sing N N 205 HIS CB CG sing N N 206 HIS CB HB2 sing N N 207 HIS CB HB3 sing N N 208 HIS CG ND1 sing Y N 209 HIS CG CD2 doub Y N 210 HIS ND1 CE1 doub Y N 211 HIS ND1 HD1 sing N N 212 HIS CD2 NE2 sing Y N 213 HIS CD2 HD2 sing N N 214 HIS CE1 NE2 sing Y N 215 HIS CE1 HE1 sing N N 216 HIS NE2 HE2 sing N N 217 HIS OXT HXT sing N N 218 HOH O H1 sing N N 219 HOH O H2 sing N N 220 ILE N CA sing N N 221 ILE N H sing N N 222 ILE N H2 sing N N 223 ILE CA C sing N N 224 ILE CA CB sing N N 225 ILE CA HA sing N N 226 ILE C O doub N N 227 ILE C OXT sing N N 228 ILE CB CG1 sing N N 229 ILE CB CG2 sing N N 230 ILE CB HB sing N N 231 ILE CG1 CD1 sing N N 232 ILE CG1 HG12 sing N N 233 ILE CG1 HG13 sing N N 234 ILE CG2 HG21 sing N N 235 ILE CG2 HG22 sing N N 236 ILE CG2 HG23 sing N N 237 ILE CD1 HD11 sing N N 238 ILE CD1 HD12 sing N N 239 ILE CD1 HD13 sing N N 240 ILE OXT HXT sing N N 241 LEU N CA sing N N 242 LEU N H sing N N 243 LEU N H2 sing N N 244 LEU CA C sing N N 245 LEU CA CB sing N N 246 LEU CA HA sing N N 247 LEU C O doub N N 248 LEU C OXT sing N N 249 LEU CB CG sing N N 250 LEU CB HB2 sing N N 251 LEU CB HB3 sing N N 252 LEU CG CD1 sing N N 253 LEU CG CD2 sing N N 254 LEU CG HG sing N N 255 LEU CD1 HD11 sing N N 256 LEU CD1 HD12 sing N N 257 LEU CD1 HD13 sing N N 258 LEU CD2 HD21 sing N N 259 LEU CD2 HD22 sing N N 260 LEU CD2 HD23 sing N N 261 LEU OXT HXT sing N N 262 LYS N CA sing N N 263 LYS N H sing N N 264 LYS N H2 sing N N 265 LYS CA C sing N N 266 LYS CA CB sing N N 267 LYS CA HA sing N N 268 LYS C O doub N N 269 LYS C OXT sing N N 270 LYS CB CG sing N N 271 LYS CB HB2 sing N N 272 LYS CB HB3 sing N N 273 LYS CG CD sing N N 274 LYS CG HG2 sing N N 275 LYS CG HG3 sing N N 276 LYS CD CE sing N N 277 LYS CD HD2 sing N N 278 LYS CD HD3 sing N N 279 LYS CE NZ sing N N 280 LYS CE HE2 sing N N 281 LYS CE HE3 sing N N 282 LYS NZ HZ1 sing N N 283 LYS NZ HZ2 sing N N 284 LYS NZ HZ3 sing N N 285 LYS OXT HXT sing N N 286 MET N CA sing N N 287 MET N H sing N N 288 MET N H2 sing N N 289 MET CA C sing N N 290 MET CA CB sing N N 291 MET CA HA sing N N 292 MET C O doub N N 293 MET C OXT sing N N 294 MET CB CG sing N N 295 MET CB HB2 sing N N 296 MET CB HB3 sing N N 297 MET CG SD sing N N 298 MET CG HG2 sing N N 299 MET CG HG3 sing N N 300 MET SD CE sing N N 301 MET CE HE1 sing N N 302 MET CE HE2 sing N N 303 MET CE HE3 sing N N 304 MET OXT HXT sing N N 305 PHE N CA sing N N 306 PHE N H sing N N 307 PHE N H2 sing N N 308 PHE CA C sing N N 309 PHE CA CB sing N N 310 PHE CA HA sing N N 311 PHE C O doub N N 312 PHE C OXT sing N N 313 PHE CB CG sing N N 314 PHE CB HB2 sing N N 315 PHE CB HB3 sing N N 316 PHE CG CD1 doub Y N 317 PHE CG CD2 sing Y N 318 PHE CD1 CE1 sing Y N 319 PHE CD1 HD1 sing N N 320 PHE CD2 CE2 doub Y N 321 PHE CD2 HD2 sing N N 322 PHE CE1 CZ doub Y N 323 PHE CE1 HE1 sing N N 324 PHE CE2 CZ sing Y N 325 PHE CE2 HE2 sing N N 326 PHE CZ HZ sing N N 327 PHE OXT HXT sing N N 328 PRO N CA sing N N 329 PRO N CD sing N N 330 PRO N H sing N N 331 PRO CA C sing N N 332 PRO CA CB sing N N 333 PRO CA HA sing N N 334 PRO C O doub N N 335 PRO C OXT sing N N 336 PRO CB CG sing N N 337 PRO CB HB2 sing N N 338 PRO CB HB3 sing N N 339 PRO CG CD sing N N 340 PRO CG HG2 sing N N 341 PRO CG HG3 sing N N 342 PRO CD HD2 sing N N 343 PRO CD HD3 sing N N 344 PRO OXT HXT sing N N 345 SER N CA sing N N 346 SER N H sing N N 347 SER N H2 sing N N 348 SER CA C sing N N 349 SER CA CB sing N N 350 SER CA HA sing N N 351 SER C O doub N N 352 SER C OXT sing N N 353 SER CB OG sing N N 354 SER CB HB2 sing N N 355 SER CB HB3 sing N N 356 SER OG HG sing N N 357 SER OXT HXT sing N N 358 THR N CA sing N N 359 THR N H sing N N 360 THR N H2 sing N N 361 THR CA C sing N N 362 THR CA CB sing N N 363 THR CA HA sing N N 364 THR C O doub N N 365 THR C OXT sing N N 366 THR CB OG1 sing N N 367 THR CB CG2 sing N N 368 THR CB HB sing N N 369 THR OG1 HG1 sing N N 370 THR CG2 HG21 sing N N 371 THR CG2 HG22 sing N N 372 THR CG2 HG23 sing N N 373 THR OXT HXT sing N N 374 TYR N CA sing N N 375 TYR N H sing N N 376 TYR N H2 sing N N 377 TYR CA C sing N N 378 TYR CA CB sing N N 379 TYR CA HA sing N N 380 TYR C O doub N N 381 TYR C OXT sing N N 382 TYR CB CG sing N N 383 TYR CB HB2 sing N N 384 TYR CB HB3 sing N N 385 TYR CG CD1 doub Y N 386 TYR CG CD2 sing Y N 387 TYR CD1 CE1 sing Y N 388 TYR CD1 HD1 sing N N 389 TYR CD2 CE2 doub Y N 390 TYR CD2 HD2 sing N N 391 TYR CE1 CZ doub Y N 392 TYR CE1 HE1 sing N N 393 TYR CE2 CZ sing Y N 394 TYR CE2 HE2 sing N N 395 TYR CZ OH sing N N 396 TYR OH HH sing N N 397 TYR OXT HXT sing N N 398 VAL N CA sing N N 399 VAL N H sing N N 400 VAL N H2 sing N N 401 VAL CA C sing N N 402 VAL CA CB sing N N 403 VAL CA HA sing N N 404 VAL C O doub N N 405 VAL C OXT sing N N 406 VAL CB CG1 sing N N 407 VAL CB CG2 sing N N 408 VAL CB HB sing N N 409 VAL CG1 HG11 sing N N 410 VAL CG1 HG12 sing N N 411 VAL CG1 HG13 sing N N 412 VAL CG2 HG21 sing N N 413 VAL CG2 HG22 sing N N 414 VAL CG2 HG23 sing N N 415 VAL OXT HXT sing N N 416 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171399 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_id G_1002283 _pdbx_deposit_group.group_description None _pdbx_deposit_group.group_title 'Group deposition of SARS-CoV-2 NSP3 Macrodomain in complex with inhibitors from the ASAP AViDD centre' _pdbx_deposit_group.group_type 'changed state' # _atom_sites.entry_id 7GZZ _atom_sites.fract_transf_matrix[1][1] 0.026102 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005353 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030173 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015849 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_