data_7H25 # _entry.id 7H25 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7H25 pdb_00007h25 10.2210/pdb7h25/pdb WWPDB D_1001406928 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-05-08 2 'Structure model' 1 1 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Structure summary' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category struct_keywords # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_struct_keywords.text' # _pdbx_database_status.entry_id 7H25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2024-04-03 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.email frankfurt.von-delft@diamond.ac.uk _pdbx_contact_author.name_first Frank _pdbx_contact_author.name_last 'von Delft' _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0378-0017 _pdbx_contact_author.name_mi ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ni, X.' 1 'Godoy, A.S.' 2 'Marples, P.G.' 3 'Fairhead, M.' 4 'Balcomb, B.H.' 5 'Tomlinson, C.W.E.' 6 'Koekemoer, L.' 7 'Aschenbrenner, J.C.' 8 'Lithgo, R.M.' 9 'Thompson, W.' 10 'Wild, C.' 11 'Williams, E.P.' 12 'Winokan, M.' 13 'Chandran, A.V.' 14 'Fearon, D.' 15 'Walsh, M.A.' 16 'von Delft, F.' 17 # _citation.id primary _citation.title 'PanDDA analysis group deposition of ZIKV NS2B-NS3 protease' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Ni, X.' ? 1 primary 'Godoy, A.S.' ? 2 primary 'Marples, P.G.' ? 3 primary 'Fairhead, M.' ? 4 primary 'Balcomb, B.H.' ? 5 primary 'Tomlinson, C.W.E.' ? 6 primary 'Koekemoer, L.' ? 7 primary 'Aschenbrenner, J.C.' ? 8 primary 'Lithgo, R.M.' ? 9 primary 'Thompson, W.' ? 10 primary 'Wild, C.' ? 11 primary 'Williams, E.P.' ? 12 primary 'Winokan, M.' ? 13 primary 'Chandran, A.V.' ? 14 primary 'Fearon, D.' ? 15 primary 'Walsh, M.A.' ? 16 primary 'von Delft, F.' ? 17 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine protease subunit NS2B' 5067.486 1 ? ? ? ? 2 polymer man 'Serine protease NS3' 18117.629 1 3.4.21.91,3.6.1.15,3.6.4.13 None ? ? 3 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 4 ? ? ? ? 4 non-polymer syn 1H-indazole-3-carbonitrile 143.145 1 ? ? ? ? 5 water nat water 18.015 121 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Flavivirin protease NS2B regulatory subunit,Non-structural protein 2B' 2 'Flavivirin protease NS3 catalytic subunit,Non-structural protein 3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SMGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEE SMGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEE A ? 2 'polypeptide(L)' no no ;MKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAW DGLSEVQLLAVPPGERAKNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGK REEETPVE ; ;MKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAW DGLSEVQLLAVPPGERAKNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGK REEETPVE ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'DIMETHYL SULFOXIDE' DMS 4 1H-indazole-3-carbonitrile K4R 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 LYS n 1 5 SER n 1 6 VAL n 1 7 ASP n 1 8 MET n 1 9 TYR n 1 10 ILE n 1 11 GLU n 1 12 ARG n 1 13 ALA n 1 14 GLY n 1 15 ASP n 1 16 ILE n 1 17 THR n 1 18 TRP n 1 19 GLU n 1 20 LYS n 1 21 ASP n 1 22 ALA n 1 23 GLU n 1 24 VAL n 1 25 THR n 1 26 GLY n 1 27 ASN n 1 28 SER n 1 29 PRO n 1 30 ARG n 1 31 LEU n 1 32 ASP n 1 33 VAL n 1 34 ALA n 1 35 LEU n 1 36 ASP n 1 37 GLU n 1 38 SER n 1 39 GLY n 1 40 ASP n 1 41 PHE n 1 42 SER n 1 43 LEU n 1 44 VAL n 1 45 GLU n 1 46 GLU n 2 1 MET n 2 2 LYS n 2 3 GLU n 2 4 VAL n 2 5 LYS n 2 6 LYS n 2 7 GLY n 2 8 GLU n 2 9 THR n 2 10 THR n 2 11 ASP n 2 12 GLY n 2 13 VAL n 2 14 TYR n 2 15 ARG n 2 16 VAL n 2 17 MET n 2 18 THR n 2 19 ARG n 2 20 ARG n 2 21 LEU n 2 22 LEU n 2 23 GLY n 2 24 SER n 2 25 THR n 2 26 GLN n 2 27 VAL n 2 28 GLY n 2 29 VAL n 2 30 GLY n 2 31 VAL n 2 32 MET n 2 33 GLN n 2 34 GLU n 2 35 GLY n 2 36 VAL n 2 37 PHE n 2 38 HIS n 2 39 THR n 2 40 MET n 2 41 TRP n 2 42 HIS n 2 43 VAL n 2 44 THR n 2 45 LYS n 2 46 GLY n 2 47 ALA n 2 48 ALA n 2 49 LEU n 2 50 ARG n 2 51 SER n 2 52 GLY n 2 53 GLU n 2 54 GLY n 2 55 ARG n 2 56 LEU n 2 57 ASP n 2 58 PRO n 2 59 TYR n 2 60 TRP n 2 61 GLY n 2 62 ASP n 2 63 VAL n 2 64 LYS n 2 65 GLN n 2 66 ASP n 2 67 LEU n 2 68 VAL n 2 69 SER n 2 70 TYR n 2 71 CYS n 2 72 GLY n 2 73 PRO n 2 74 TRP n 2 75 LYS n 2 76 LEU n 2 77 ASP n 2 78 ALA n 2 79 ALA n 2 80 TRP n 2 81 ASP n 2 82 GLY n 2 83 LEU n 2 84 SER n 2 85 GLU n 2 86 VAL n 2 87 GLN n 2 88 LEU n 2 89 LEU n 2 90 ALA n 2 91 VAL n 2 92 PRO n 2 93 PRO n 2 94 GLY n 2 95 GLU n 2 96 ARG n 2 97 ALA n 2 98 LYS n 2 99 ASN n 2 100 ILE n 2 101 GLN n 2 102 THR n 2 103 LEU n 2 104 PRO n 2 105 GLY n 2 106 ILE n 2 107 PHE n 2 108 LYS n 2 109 THR n 2 110 LYS n 2 111 ASP n 2 112 GLY n 2 113 ASP n 2 114 ILE n 2 115 GLY n 2 116 ALA n 2 117 VAL n 2 118 ALA n 2 119 LEU n 2 120 ASP n 2 121 TYR n 2 122 PRO n 2 123 ALA n 2 124 GLY n 2 125 THR n 2 126 SER n 2 127 GLY n 2 128 SER n 2 129 PRO n 2 130 ILE n 2 131 LEU n 2 132 ASP n 2 133 LYS n 2 134 CYS n 2 135 GLY n 2 136 ARG n 2 137 VAL n 2 138 ILE n 2 139 GLY n 2 140 LEU n 2 141 TYR n 2 142 GLY n 2 143 ASN n 2 144 GLY n 2 145 VAL n 2 146 VAL n 2 147 ILE n 2 148 LYS n 2 149 ASN n 2 150 GLY n 2 151 SER n 2 152 TYR n 2 153 VAL n 2 154 SER n 2 155 ALA n 2 156 ILE n 2 157 THR n 2 158 GLN n 2 159 GLY n 2 160 LYS n 2 161 ARG n 2 162 GLU n 2 163 GLU n 2 164 GLU n 2 165 THR n 2 166 PRO n 2 167 VAL n 2 168 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 46 ? ? ? ? ? ? ? ? ? 'Zika virus' 64320 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 168 ? ? ? ? ? ? ? ? ? 'Zika virus' 64320 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K4R non-polymer . 1H-indazole-3-carbonitrile ? 'C8 H5 N3' 143.145 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 44 ? ? ? A . n A 1 2 MET 2 45 ? ? ? A . n A 1 3 GLY 3 46 ? ? ? A . n A 1 4 LYS 4 47 ? ? ? A . n A 1 5 SER 5 48 ? ? ? A . n A 1 6 VAL 6 49 ? ? ? A . n A 1 7 ASP 7 50 50 ASP ASP A . n A 1 8 MET 8 51 51 MET MET A . n A 1 9 TYR 9 52 52 TYR TYR A . n A 1 10 ILE 10 53 53 ILE ILE A . n A 1 11 GLU 11 54 54 GLU GLU A . n A 1 12 ARG 12 55 55 ARG ARG A . n A 1 13 ALA 13 56 56 ALA ALA A . n A 1 14 GLY 14 57 57 GLY GLY A . n A 1 15 ASP 15 58 58 ASP ASP A . n A 1 16 ILE 16 59 59 ILE ILE A . n A 1 17 THR 17 60 60 THR THR A . n A 1 18 TRP 18 61 61 TRP TRP A . n A 1 19 GLU 19 62 62 GLU GLU A . n A 1 20 LYS 20 63 63 LYS LYS A . n A 1 21 ASP 21 64 64 ASP ASP A . n A 1 22 ALA 22 65 65 ALA ALA A . n A 1 23 GLU 23 66 66 GLU GLU A . n A 1 24 VAL 24 67 67 VAL VAL A . n A 1 25 THR 25 68 68 THR THR A . n A 1 26 GLY 26 69 69 GLY GLY A . n A 1 27 ASN 27 70 70 ASN ASN A . n A 1 28 SER 28 71 71 SER SER A . n A 1 29 PRO 29 72 72 PRO PRO A . n A 1 30 ARG 30 73 73 ARG ARG A . n A 1 31 LEU 31 74 74 LEU LEU A . n A 1 32 ASP 32 75 75 ASP ASP A . n A 1 33 VAL 33 76 76 VAL VAL A . n A 1 34 ALA 34 77 77 ALA ALA A . n A 1 35 LEU 35 78 78 LEU LEU A . n A 1 36 ASP 36 79 79 ASP ASP A . n A 1 37 GLU 37 80 80 GLU GLU A . n A 1 38 SER 38 81 81 SER SER A . n A 1 39 GLY 39 82 82 GLY GLY A . n A 1 40 ASP 40 83 83 ASP ASP A . n A 1 41 PHE 41 84 84 PHE PHE A . n A 1 42 SER 42 85 85 SER SER A . n A 1 43 LEU 43 86 86 LEU LEU A . n A 1 44 VAL 44 87 87 VAL VAL A . n A 1 45 GLU 45 88 88 GLU GLU A . n A 1 46 GLU 46 89 ? ? ? A . n B 2 1 MET 1 10 ? ? ? B . n B 2 2 LYS 2 11 ? ? ? B . n B 2 3 GLU 3 12 ? ? ? B . n B 2 4 VAL 4 13 ? ? ? B . n B 2 5 LYS 5 14 ? ? ? B . n B 2 6 LYS 6 15 ? ? ? B . n B 2 7 GLY 7 16 16 GLY GLY B . n B 2 8 GLU 8 17 17 GLU GLU B . n B 2 9 THR 9 18 18 THR THR B . n B 2 10 THR 10 19 19 THR THR B . n B 2 11 ASP 11 20 20 ASP ASP B . n B 2 12 GLY 12 21 21 GLY GLY B . n B 2 13 VAL 13 22 22 VAL VAL B . n B 2 14 TYR 14 23 23 TYR TYR B . n B 2 15 ARG 15 24 24 ARG ARG B . n B 2 16 VAL 16 25 25 VAL VAL B . n B 2 17 MET 17 26 26 MET MET B . n B 2 18 THR 18 27 27 THR THR B . n B 2 19 ARG 19 28 28 ARG ARG B . n B 2 20 ARG 20 29 29 ARG ARG B . n B 2 21 LEU 21 30 30 LEU LEU B . n B 2 22 LEU 22 31 31 LEU LEU B . n B 2 23 GLY 23 32 32 GLY GLY B . n B 2 24 SER 24 33 33 SER SER B . n B 2 25 THR 25 34 34 THR THR B . n B 2 26 GLN 26 35 35 GLN GLN B . n B 2 27 VAL 27 36 36 VAL VAL B . n B 2 28 GLY 28 37 37 GLY GLY B . n B 2 29 VAL 29 38 38 VAL VAL B . n B 2 30 GLY 30 39 39 GLY GLY B . n B 2 31 VAL 31 40 40 VAL VAL B . n B 2 32 MET 32 41 41 MET MET B . n B 2 33 GLN 33 42 42 GLN GLN B . n B 2 34 GLU 34 43 43 GLU GLU B . n B 2 35 GLY 35 44 44 GLY GLY B . n B 2 36 VAL 36 45 45 VAL VAL B . n B 2 37 PHE 37 46 46 PHE PHE B . n B 2 38 HIS 38 47 47 HIS HIS B . n B 2 39 THR 39 48 48 THR THR B . n B 2 40 MET 40 49 49 MET MET B . n B 2 41 TRP 41 50 50 TRP TRP B . n B 2 42 HIS 42 51 51 HIS HIS B . n B 2 43 VAL 43 52 52 VAL VAL B . n B 2 44 THR 44 53 53 THR THR B . n B 2 45 LYS 45 54 54 LYS LYS B . n B 2 46 GLY 46 55 55 GLY GLY B . n B 2 47 ALA 47 56 56 ALA ALA B . n B 2 48 ALA 48 57 57 ALA ALA B . n B 2 49 LEU 49 58 58 LEU LEU B . n B 2 50 ARG 50 59 59 ARG ARG B . n B 2 51 SER 51 60 60 SER SER B . n B 2 52 GLY 52 61 61 GLY GLY B . n B 2 53 GLU 53 62 62 GLU GLU B . n B 2 54 GLY 54 63 63 GLY GLY B . n B 2 55 ARG 55 64 64 ARG ARG B . n B 2 56 LEU 56 65 65 LEU LEU B . n B 2 57 ASP 57 66 66 ASP ASP B . n B 2 58 PRO 58 67 67 PRO PRO B . n B 2 59 TYR 59 68 68 TYR TYR B . n B 2 60 TRP 60 69 69 TRP TRP B . n B 2 61 GLY 61 70 70 GLY GLY B . n B 2 62 ASP 62 71 71 ASP ASP B . n B 2 63 VAL 63 72 72 VAL VAL B . n B 2 64 LYS 64 73 73 LYS LYS B . n B 2 65 GLN 65 74 74 GLN GLN B . n B 2 66 ASP 66 75 75 ASP ASP B . n B 2 67 LEU 67 76 76 LEU LEU B . n B 2 68 VAL 68 77 77 VAL VAL B . n B 2 69 SER 69 78 78 SER SER B . n B 2 70 TYR 70 79 79 TYR TYR B . n B 2 71 CYS 71 80 80 CYS CYS B . n B 2 72 GLY 72 81 81 GLY GLY B . n B 2 73 PRO 73 82 82 PRO PRO B . n B 2 74 TRP 74 83 83 TRP TRP B . n B 2 75 LYS 75 84 84 LYS LYS B . n B 2 76 LEU 76 85 85 LEU LEU B . n B 2 77 ASP 77 86 86 ASP ASP B . n B 2 78 ALA 78 87 87 ALA ALA B . n B 2 79 ALA 79 88 88 ALA ALA B . n B 2 80 TRP 80 89 89 TRP TRP B . n B 2 81 ASP 81 90 90 ASP ASP B . n B 2 82 GLY 82 91 91 GLY GLY B . n B 2 83 LEU 83 92 92 LEU LEU B . n B 2 84 SER 84 93 93 SER SER B . n B 2 85 GLU 85 94 94 GLU GLU B . n B 2 86 VAL 86 95 95 VAL VAL B . n B 2 87 GLN 87 96 96 GLN GLN B . n B 2 88 LEU 88 97 97 LEU LEU B . n B 2 89 LEU 89 98 98 LEU LEU B . n B 2 90 ALA 90 99 99 ALA ALA B . n B 2 91 VAL 91 100 100 VAL VAL B . n B 2 92 PRO 92 101 101 PRO PRO B . n B 2 93 PRO 93 102 102 PRO PRO B . n B 2 94 GLY 94 103 103 GLY GLY B . n B 2 95 GLU 95 104 104 GLU GLU B . n B 2 96 ARG 96 105 105 ARG ARG B . n B 2 97 ALA 97 106 106 ALA ALA B . n B 2 98 LYS 98 107 107 LYS LYS B . n B 2 99 ASN 99 108 108 ASN ASN B . n B 2 100 ILE 100 109 109 ILE ILE B . n B 2 101 GLN 101 110 110 GLN GLN B . n B 2 102 THR 102 111 111 THR THR B . n B 2 103 LEU 103 112 112 LEU LEU B . n B 2 104 PRO 104 113 113 PRO PRO B . n B 2 105 GLY 105 114 114 GLY GLY B . n B 2 106 ILE 106 115 115 ILE ILE B . n B 2 107 PHE 107 116 116 PHE PHE B . n B 2 108 LYS 108 117 117 LYS LYS B . n B 2 109 THR 109 118 118 THR THR B . n B 2 110 LYS 110 119 119 LYS LYS B . n B 2 111 ASP 111 120 120 ASP ASP B . n B 2 112 GLY 112 121 121 GLY GLY B . n B 2 113 ASP 113 122 122 ASP ASP B . n B 2 114 ILE 114 123 123 ILE ILE B . n B 2 115 GLY 115 124 124 GLY GLY B . n B 2 116 ALA 116 125 125 ALA ALA B . n B 2 117 VAL 117 126 126 VAL VAL B . n B 2 118 ALA 118 127 127 ALA ALA B . n B 2 119 LEU 119 128 128 LEU LEU B . n B 2 120 ASP 120 129 129 ASP ASP B . n B 2 121 TYR 121 130 130 TYR TYR B . n B 2 122 PRO 122 131 131 PRO PRO B . n B 2 123 ALA 123 132 132 ALA ALA B . n B 2 124 GLY 124 133 133 GLY GLY B . n B 2 125 THR 125 134 134 THR THR B . n B 2 126 SER 126 135 135 SER SER B . n B 2 127 GLY 127 136 136 GLY GLY B . n B 2 128 SER 128 137 137 SER SER B . n B 2 129 PRO 129 138 138 PRO PRO B . n B 2 130 ILE 130 139 139 ILE ILE B . n B 2 131 LEU 131 140 140 LEU LEU B . n B 2 132 ASP 132 141 141 ASP ASP B . n B 2 133 LYS 133 142 142 LYS LYS B . n B 2 134 CYS 134 143 143 CYS CYS B . n B 2 135 GLY 135 144 144 GLY GLY B . n B 2 136 ARG 136 145 145 ARG ARG B . n B 2 137 VAL 137 146 146 VAL VAL B . n B 2 138 ILE 138 147 147 ILE ILE B . n B 2 139 GLY 139 148 148 GLY GLY B . n B 2 140 LEU 140 149 149 LEU LEU B . n B 2 141 TYR 141 150 150 TYR TYR B . n B 2 142 GLY 142 151 151 GLY GLY B . n B 2 143 ASN 143 152 152 ASN ASN B . n B 2 144 GLY 144 153 153 GLY GLY B . n B 2 145 VAL 145 154 154 VAL VAL B . n B 2 146 VAL 146 155 155 VAL VAL B . n B 2 147 ILE 147 156 156 ILE ILE B . n B 2 148 LYS 148 157 157 LYS LYS B . n B 2 149 ASN 149 158 158 ASN ASN B . n B 2 150 GLY 150 159 159 GLY GLY B . n B 2 151 SER 151 160 160 SER SER B . n B 2 152 TYR 152 161 161 TYR TYR B . n B 2 153 VAL 153 162 162 VAL VAL B . n B 2 154 SER 154 163 163 SER SER B . n B 2 155 ALA 155 164 164 ALA ALA B . n B 2 156 ILE 156 165 165 ILE ILE B . n B 2 157 THR 157 166 166 THR THR B . n B 2 158 GLN 158 167 167 GLN GLN B . n B 2 159 GLY 159 168 168 GLY GLY B . n B 2 160 LYS 160 169 169 LYS LYS B . n B 2 161 ARG 161 170 170 ARG ARG B . n B 2 162 GLU 162 171 171 GLU GLU B . n B 2 163 GLU 163 172 ? ? ? B . n B 2 164 GLU 164 173 ? ? ? B . n B 2 165 THR 165 174 ? ? ? B . n B 2 166 PRO 166 175 ? ? ? B . n B 2 167 VAL 167 176 ? ? ? B . n B 2 168 GLU 168 177 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 DMS 1 101 303 DMS DMS A . D 3 DMS 1 201 202 DMS DMS B . E 3 DMS 1 202 203 DMS DMS B . F 4 K4R 1 203 301 K4R LIG B . G 3 DMS 1 204 302 DMS DMS B . H 5 HOH 1 201 121 HOH HOH A . H 5 HOH 2 202 124 HOH HOH A . H 5 HOH 3 203 98 HOH HOH A . H 5 HOH 4 204 117 HOH HOH A . H 5 HOH 5 205 36 HOH HOH A . H 5 HOH 6 206 49 HOH HOH A . H 5 HOH 7 207 34 HOH HOH A . H 5 HOH 8 208 118 HOH HOH A . H 5 HOH 9 209 166 HOH HOH A . H 5 HOH 10 210 65 HOH HOH A . H 5 HOH 11 211 120 HOH HOH A . H 5 HOH 12 212 28 HOH HOH A . H 5 HOH 13 213 148 HOH HOH A . H 5 HOH 14 214 50 HOH HOH A . H 5 HOH 15 215 123 HOH HOH A . H 5 HOH 16 216 29 HOH HOH A . H 5 HOH 17 217 105 HOH HOH A . H 5 HOH 18 218 144 HOH HOH A . H 5 HOH 19 219 20 HOH HOH A . H 5 HOH 20 220 110 HOH HOH A . H 5 HOH 21 221 152 HOH HOH A . H 5 HOH 22 222 170 HOH HOH A . H 5 HOH 23 223 149 HOH HOH A . H 5 HOH 24 224 119 HOH HOH A . H 5 HOH 25 225 151 HOH HOH A . H 5 HOH 26 226 27 HOH HOH A . H 5 HOH 27 227 162 HOH HOH A . H 5 HOH 28 228 169 HOH HOH A . H 5 HOH 29 229 165 HOH HOH A . H 5 HOH 30 230 168 HOH HOH A . I 5 HOH 1 301 131 HOH HOH B . I 5 HOH 2 302 51 HOH HOH B . I 5 HOH 3 303 11 HOH HOH B . I 5 HOH 4 304 89 HOH HOH B . I 5 HOH 5 305 133 HOH HOH B . I 5 HOH 6 306 142 HOH HOH B . I 5 HOH 7 307 31 HOH HOH B . I 5 HOH 8 308 90 HOH HOH B . I 5 HOH 9 309 92 HOH HOH B . I 5 HOH 10 310 54 HOH HOH B . I 5 HOH 11 311 172 HOH HOH B . I 5 HOH 12 312 14 HOH HOH B . I 5 HOH 13 313 46 HOH HOH B . I 5 HOH 14 314 5 HOH HOH B . I 5 HOH 15 315 9 HOH HOH B . I 5 HOH 16 316 140 HOH HOH B . I 5 HOH 17 317 81 HOH HOH B . I 5 HOH 18 318 132 HOH HOH B . I 5 HOH 19 319 24 HOH HOH B . I 5 HOH 20 320 56 HOH HOH B . I 5 HOH 21 321 106 HOH HOH B . I 5 HOH 22 322 100 HOH HOH B . I 5 HOH 23 323 48 HOH HOH B . I 5 HOH 24 324 139 HOH HOH B . I 5 HOH 25 325 108 HOH HOH B . I 5 HOH 26 326 2 HOH HOH B . I 5 HOH 27 327 145 HOH HOH B . I 5 HOH 28 328 68 HOH HOH B . I 5 HOH 29 329 32 HOH HOH B . I 5 HOH 30 330 12 HOH HOH B . I 5 HOH 31 331 10 HOH HOH B . I 5 HOH 32 332 69 HOH HOH B . I 5 HOH 33 333 143 HOH HOH B . I 5 HOH 34 334 1 HOH HOH B . I 5 HOH 35 335 79 HOH HOH B . I 5 HOH 36 336 80 HOH HOH B . I 5 HOH 37 337 58 HOH HOH B . I 5 HOH 38 338 107 HOH HOH B . I 5 HOH 39 339 30 HOH HOH B . I 5 HOH 40 340 138 HOH HOH B . I 5 HOH 41 341 161 HOH HOH B . I 5 HOH 42 342 153 HOH HOH B . I 5 HOH 43 343 136 HOH HOH B . I 5 HOH 44 344 94 HOH HOH B . I 5 HOH 45 345 4 HOH HOH B . I 5 HOH 46 346 35 HOH HOH B . I 5 HOH 47 347 66 HOH HOH B . I 5 HOH 48 348 171 HOH HOH B . I 5 HOH 49 349 60 HOH HOH B . I 5 HOH 50 350 72 HOH HOH B . I 5 HOH 51 351 137 HOH HOH B . I 5 HOH 52 352 3 HOH HOH B . I 5 HOH 53 353 13 HOH HOH B . I 5 HOH 54 354 73 HOH HOH B . I 5 HOH 55 355 164 HOH HOH B . I 5 HOH 56 356 67 HOH HOH B . I 5 HOH 57 357 115 HOH HOH B . I 5 HOH 58 358 146 HOH HOH B . I 5 HOH 59 359 21 HOH HOH B . I 5 HOH 60 360 18 HOH HOH B . I 5 HOH 61 361 116 HOH HOH B . I 5 HOH 62 362 23 HOH HOH B . I 5 HOH 63 363 147 HOH HOH B . I 5 HOH 64 364 150 HOH HOH B . I 5 HOH 65 365 155 HOH HOH B . I 5 HOH 66 366 160 HOH HOH B . I 5 HOH 67 367 42 HOH HOH B . I 5 HOH 68 368 17 HOH HOH B . I 5 HOH 69 369 167 HOH HOH B . I 5 HOH 70 370 39 HOH HOH B . I 5 HOH 71 371 154 HOH HOH B . I 5 HOH 72 372 141 HOH HOH B . I 5 HOH 73 373 64 HOH HOH B . I 5 HOH 74 374 122 HOH HOH B . I 5 HOH 75 375 62 HOH HOH B . I 5 HOH 76 376 158 HOH HOH B . I 5 HOH 77 377 102 HOH HOH B . I 5 HOH 78 378 163 HOH HOH B . I 5 HOH 79 379 26 HOH HOH B . I 5 HOH 80 380 134 HOH HOH B . I 5 HOH 81 381 61 HOH HOH B . I 5 HOH 82 382 156 HOH HOH B . I 5 HOH 83 383 112 HOH HOH B . I 5 HOH 84 384 157 HOH HOH B . I 5 HOH 85 385 87 HOH HOH B . I 5 HOH 86 386 135 HOH HOH B . I 5 HOH 87 387 75 HOH HOH B . I 5 HOH 88 388 59 HOH HOH B . I 5 HOH 89 389 109 HOH HOH B . I 5 HOH 90 390 57 HOH HOH B . I 5 HOH 91 391 44 HOH HOH B . # loop_ _software.classification _software.name _software.version _software.citation_id _software.pdbx_ordinal refinement BUSTER '2.10.4 (14-JUN-2023)' ? 1 refinement REFMAC5 . ? 2 'data scaling' Aimless . ? 3 phasing PHASER . ? 4 'data reduction' XDS . ? 5 # _cell.entry_id 7H25 _cell.length_a 42.555 _cell.length_b 42.555 _cell.length_c 216.511 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7H25 _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 # _exptl.entry_id 7H25 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_percent_sol 41.81 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.8 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '30% w/v PEG 2000, 0.2M Ammonium sulfate, 0.1M acetate (pH 4.8)' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS EIGER2 XE 9M' _diffrn_detector.pdbx_collection_date 2023-03-23 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92124 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.92124 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7H25 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.d_resolution_low 36.67 _reflns.d_resolution_high 1.56 _reflns.number_obs 29815 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_netI_over_sigmaI 8.2 _reflns.pdbx_redundancy 25.1 _reflns.pdbx_Rrim_I_all 0.118 _reflns.pdbx_Rpim_I_all 0.024 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_number_measured_all 749691 _reflns.pdbx_chi_squared 0.21 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_CC_star ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.59 _reflns_shell.number_measured_all 31744 _reflns_shell.number_unique_obs 1464 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_chi_squared 0.04 _reflns_shell.pdbx_redundancy 21.7 _reflns_shell.percent_possible_obs 99.6 _reflns_shell.pdbx_netI_over_sigmaI_obs 0.1 _reflns_shell.pdbx_Rrim_I_all 10.520 _reflns_shell.pdbx_Rpim_I_all 2.245 _reflns_shell.pdbx_CC_half 0.469 _reflns_shell.percent_possible_all ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_CC_star ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 7H25 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 22770 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.11 _refine.ls_d_res_high 1.564 _refine.ls_percent_reflns_obs 77.3 _refine.ls_R_factor_obs 0.2281 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2261 _refine.ls_R_factor_R_free 0.2645 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1162 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 52.32 _refine.aniso_B[1][1] -8.32570 _refine.aniso_B[2][2] -8.32570 _refine.aniso_B[3][3] 16.65140 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.128 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.125 _refine.pdbx_overall_SU_R_Blow_DPI 0.138 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.130 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 7H25 _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1476 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1624 _refine_hist.d_res_high 1.564 _refine_hist.d_res_low 23.11 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1675 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.03 ? 2.00 2297 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 563 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? ? ? 'X-RAY DIFFRACTION' ? t_gen_planes ? ? 5.00 305 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 10.00 1675 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 3.65 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 16.39 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 210 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1427 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 51 _refine_ls_shell.d_res_high 1.56 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 426 _refine_ls_shell.R_factor_R_work 0.5922 _refine_ls_shell.percent_reflns_obs 7.03 _refine_ls_shell.R_factor_R_free 0.4456 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 6.58 _refine_ls_shell.number_reflns_R_free 30 _refine_ls_shell.number_reflns_all 456 _refine_ls_shell.R_factor_all 0.5825 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 7H25 _struct.title 'PanDDA analysis group deposition -- Crystal Structure of ZIKV NS2B-NS3 protease in complex with Z1198158918' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7H25 _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'ASAP, AViDD, SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP POLG_ZIKV Q32ZE1 ? 1 GKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEE 1414 2 UNP POLG_ZIKV Q32ZE1 ? 2 ;KEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWD GLSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKR EEETPVE ; 1509 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7H25 A 3 ? 46 ? Q32ZE1 1414 ? 1457 ? 46 89 2 2 7H25 B 2 ? 168 ? Q32ZE1 1509 ? 1675 ? 11 177 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7H25 SER A 1 ? UNP Q32ZE1 ? ? 'expression tag' 44 1 1 7H25 MET A 2 ? UNP Q32ZE1 ? ? 'expression tag' 45 2 2 7H25 MET B 1 ? UNP Q32ZE1 ? ? 'initiating methionine' 10 3 2 7H25 LYS B 98 ? UNP Q32ZE1 ARG 1605 conflict 107 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4910 ? 1 MORE -21 ? 1 'SSA (A^2)' 9700 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TRP B 41 ? LYS B 45 ? TRP B 50 LYS B 54 1 ? 5 HELX_P HELX_P2 AA2 PRO B 122 ? SER B 126 ? PRO B 131 SER B 135 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 5 ? AA3 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY B 54 ? LEU B 56 ? GLY B 63 LEU B 65 AA1 2 LEU B 49 ? SER B 51 ? LEU B 58 SER B 60 AA1 3 MET A 8 ? GLY A 14 ? MET A 51 GLY A 57 AA1 4 GLY B 12 ? THR B 18 ? GLY B 21 THR B 27 AA1 5 THR B 25 ? GLN B 33 ? THR B 34 GLN B 42 AA1 6 VAL B 36 ? MET B 40 ? VAL B 45 MET B 49 AA1 7 LEU B 67 ? TYR B 70 ? LEU B 76 TYR B 79 AA1 8 PRO B 58 ? ASP B 62 ? PRO B 67 ASP B 71 AA2 1 GLU A 23 ? VAL A 24 ? GLU A 66 VAL A 67 AA2 2 LYS B 98 ? THR B 102 ? LYS B 107 THR B 111 AA2 3 VAL B 86 ? ALA B 90 ? VAL B 95 ALA B 99 AA2 4 SER B 128 ? LEU B 131 ? SER B 137 LEU B 140 AA2 5 VAL B 137 ? TYR B 141 ? VAL B 146 TYR B 150 AA3 1 PHE A 41 ? LEU A 43 ? PHE A 84 LEU A 86 AA3 2 ARG A 30 ? LEU A 35 ? ARG A 73 LEU A 78 AA3 3 GLY B 105 ? THR B 109 ? GLY B 114 THR B 118 AA3 4 GLY B 112 ? VAL B 117 ? GLY B 121 VAL B 126 AA3 5 TYR B 152 ? ALA B 155 ? TYR B 161 ALA B 164 AA3 6 GLY B 144 ? VAL B 146 ? GLY B 153 VAL B 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU B 56 ? O LEU B 65 N LEU B 49 ? N LEU B 58 AA1 2 3 O ARG B 50 ? O ARG B 59 N ILE A 10 ? N ILE A 53 AA1 3 4 N TYR A 9 ? N TYR A 52 O MET B 17 ? O MET B 26 AA1 4 5 N VAL B 16 ? N VAL B 25 O GLY B 28 ? O GLY B 37 AA1 5 6 N VAL B 31 ? N VAL B 40 O HIS B 38 ? O HIS B 47 AA1 6 7 N THR B 39 ? N THR B 48 O VAL B 68 ? O VAL B 77 AA1 7 8 O SER B 69 ? O SER B 78 N TYR B 59 ? N TYR B 68 AA2 1 2 N GLU A 23 ? N GLU A 66 O GLN B 101 ? O GLN B 110 AA2 2 3 O ILE B 100 ? O ILE B 109 N LEU B 88 ? N LEU B 97 AA2 3 4 N LEU B 89 ? N LEU B 98 O PRO B 129 ? O PRO B 138 AA2 4 5 N ILE B 130 ? N ILE B 139 O GLY B 139 ? O GLY B 148 AA3 1 2 O SER A 42 ? O SER A 85 N ALA A 34 ? N ALA A 77 AA3 2 3 N LEU A 31 ? N LEU A 74 O LYS B 108 ? O LYS B 117 AA3 3 4 N PHE B 107 ? N PHE B 116 O ILE B 114 ? O ILE B 123 AA3 4 5 N VAL B 117 ? N VAL B 126 O SER B 154 ? O SER B 163 AA3 5 6 O VAL B 153 ? O VAL B 162 N VAL B 145 ? N VAL B 154 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 64 ? ? 77.10 32.37 2 1 CYS B 80 ? ? 76.64 -11.55 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 391 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -14.4678 -1.4348 -19.8688 -0.0810 -0.0991 -0.1557 0.1466 0.0840 0.0697 2.9167 3.5472 3.6885 -1.6273 0.3074 0.8950 0.4924 0.3923 0.2149 -0.5113 -0.3815 -0.2001 -0.0881 0.4811 -0.1109 'X-RAY DIFFRACTION' 2 ? refined -18.3556 1.2639 -15.6466 0.0266 -0.0535 0.0153 0.1229 0.0322 0.0207 1.3831 1.6933 2.4543 -1.3553 0.3507 -0.0601 0.3159 0.0944 0.1569 -0.1009 -0.2730 -0.0530 -0.0030 0.2683 -0.0429 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '{ A|* }' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '{ B|* }' # _pdbx_entry_details.entry_id 7H25 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 44 ? A SER 1 2 1 Y 1 A MET 45 ? A MET 2 3 1 Y 1 A GLY 46 ? A GLY 3 4 1 Y 1 A LYS 47 ? A LYS 4 5 1 Y 1 A SER 48 ? A SER 5 6 1 Y 1 A VAL 49 ? A VAL 6 7 1 Y 1 A GLU 89 ? A GLU 46 8 1 Y 1 B MET 10 ? B MET 1 9 1 Y 1 B LYS 11 ? B LYS 2 10 1 Y 1 B GLU 12 ? B GLU 3 11 1 Y 1 B VAL 13 ? B VAL 4 12 1 Y 1 B LYS 14 ? B LYS 5 13 1 Y 1 B LYS 15 ? B LYS 6 14 1 Y 1 B GLU 172 ? B GLU 163 15 1 Y 1 B GLU 173 ? B GLU 164 16 1 Y 1 B THR 174 ? B THR 165 17 1 Y 1 B PRO 175 ? B PRO 166 18 1 Y 1 B VAL 176 ? B VAL 167 19 1 Y 1 B GLU 177 ? B GLU 168 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DMS S S N N 88 DMS O O N N 89 DMS C1 C N N 90 DMS C2 C N N 91 DMS H11 H N N 92 DMS H12 H N N 93 DMS H13 H N N 94 DMS H21 H N N 95 DMS H22 H N N 96 DMS H23 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 K4R N1 N N N 193 K4R N3 N Y N 194 K4R C4 C Y N 195 K4R C5 C Y N 196 K4R C6 C Y N 197 K4R C7 C Y N 198 K4R C8 C Y N 199 K4R C1 C N N 200 K4R C2 C Y N 201 K4R C3 C Y N 202 K4R N2 N Y N 203 K4R H1 H N N 204 K4R H2 H N N 205 K4R H3 H N N 206 K4R H4 H N N 207 K4R H5 H N N 208 LEU N N N N 209 LEU CA C N S 210 LEU C C N N 211 LEU O O N N 212 LEU CB C N N 213 LEU CG C N N 214 LEU CD1 C N N 215 LEU CD2 C N N 216 LEU OXT O N N 217 LEU H H N N 218 LEU H2 H N N 219 LEU HA H N N 220 LEU HB2 H N N 221 LEU HB3 H N N 222 LEU HG H N N 223 LEU HD11 H N N 224 LEU HD12 H N N 225 LEU HD13 H N N 226 LEU HD21 H N N 227 LEU HD22 H N N 228 LEU HD23 H N N 229 LEU HXT H N N 230 LYS N N N N 231 LYS CA C N S 232 LYS C C N N 233 LYS O O N N 234 LYS CB C N N 235 LYS CG C N N 236 LYS CD C N N 237 LYS CE C N N 238 LYS NZ N N N 239 LYS OXT O N N 240 LYS H H N N 241 LYS H2 H N N 242 LYS HA H N N 243 LYS HB2 H N N 244 LYS HB3 H N N 245 LYS HG2 H N N 246 LYS HG3 H N N 247 LYS HD2 H N N 248 LYS HD3 H N N 249 LYS HE2 H N N 250 LYS HE3 H N N 251 LYS HZ1 H N N 252 LYS HZ2 H N N 253 LYS HZ3 H N N 254 LYS HXT H N N 255 MET N N N N 256 MET CA C N S 257 MET C C N N 258 MET O O N N 259 MET CB C N N 260 MET CG C N N 261 MET SD S N N 262 MET CE C N N 263 MET OXT O N N 264 MET H H N N 265 MET H2 H N N 266 MET HA H N N 267 MET HB2 H N N 268 MET HB3 H N N 269 MET HG2 H N N 270 MET HG3 H N N 271 MET HE1 H N N 272 MET HE2 H N N 273 MET HE3 H N N 274 MET HXT H N N 275 PHE N N N N 276 PHE CA C N S 277 PHE C C N N 278 PHE O O N N 279 PHE CB C N N 280 PHE CG C Y N 281 PHE CD1 C Y N 282 PHE CD2 C Y N 283 PHE CE1 C Y N 284 PHE CE2 C Y N 285 PHE CZ C Y N 286 PHE OXT O N N 287 PHE H H N N 288 PHE H2 H N N 289 PHE HA H N N 290 PHE HB2 H N N 291 PHE HB3 H N N 292 PHE HD1 H N N 293 PHE HD2 H N N 294 PHE HE1 H N N 295 PHE HE2 H N N 296 PHE HZ H N N 297 PHE HXT H N N 298 PRO N N N N 299 PRO CA C N S 300 PRO C C N N 301 PRO O O N N 302 PRO CB C N N 303 PRO CG C N N 304 PRO CD C N N 305 PRO OXT O N N 306 PRO H H N N 307 PRO HA H N N 308 PRO HB2 H N N 309 PRO HB3 H N N 310 PRO HG2 H N N 311 PRO HG3 H N N 312 PRO HD2 H N N 313 PRO HD3 H N N 314 PRO HXT H N N 315 SER N N N N 316 SER CA C N S 317 SER C C N N 318 SER O O N N 319 SER CB C N N 320 SER OG O N N 321 SER OXT O N N 322 SER H H N N 323 SER H2 H N N 324 SER HA H N N 325 SER HB2 H N N 326 SER HB3 H N N 327 SER HG H N N 328 SER HXT H N N 329 THR N N N N 330 THR CA C N S 331 THR C C N N 332 THR O O N N 333 THR CB C N R 334 THR OG1 O N N 335 THR CG2 C N N 336 THR OXT O N N 337 THR H H N N 338 THR H2 H N N 339 THR HA H N N 340 THR HB H N N 341 THR HG1 H N N 342 THR HG21 H N N 343 THR HG22 H N N 344 THR HG23 H N N 345 THR HXT H N N 346 TRP N N N N 347 TRP CA C N S 348 TRP C C N N 349 TRP O O N N 350 TRP CB C N N 351 TRP CG C Y N 352 TRP CD1 C Y N 353 TRP CD2 C Y N 354 TRP NE1 N Y N 355 TRP CE2 C Y N 356 TRP CE3 C Y N 357 TRP CZ2 C Y N 358 TRP CZ3 C Y N 359 TRP CH2 C Y N 360 TRP OXT O N N 361 TRP H H N N 362 TRP H2 H N N 363 TRP HA H N N 364 TRP HB2 H N N 365 TRP HB3 H N N 366 TRP HD1 H N N 367 TRP HE1 H N N 368 TRP HE3 H N N 369 TRP HZ2 H N N 370 TRP HZ3 H N N 371 TRP HH2 H N N 372 TRP HXT H N N 373 TYR N N N N 374 TYR CA C N S 375 TYR C C N N 376 TYR O O N N 377 TYR CB C N N 378 TYR CG C Y N 379 TYR CD1 C Y N 380 TYR CD2 C Y N 381 TYR CE1 C Y N 382 TYR CE2 C Y N 383 TYR CZ C Y N 384 TYR OH O N N 385 TYR OXT O N N 386 TYR H H N N 387 TYR H2 H N N 388 TYR HA H N N 389 TYR HB2 H N N 390 TYR HB3 H N N 391 TYR HD1 H N N 392 TYR HD2 H N N 393 TYR HE1 H N N 394 TYR HE2 H N N 395 TYR HH H N N 396 TYR HXT H N N 397 VAL N N N N 398 VAL CA C N S 399 VAL C C N N 400 VAL O O N N 401 VAL CB C N N 402 VAL CG1 C N N 403 VAL CG2 C N N 404 VAL OXT O N N 405 VAL H H N N 406 VAL H2 H N N 407 VAL HA H N N 408 VAL HB H N N 409 VAL HG11 H N N 410 VAL HG12 H N N 411 VAL HG13 H N N 412 VAL HG21 H N N 413 VAL HG22 H N N 414 VAL HG23 H N N 415 VAL HXT H N N 416 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DMS S O doub N N 83 DMS S C1 sing N N 84 DMS S C2 sing N N 85 DMS C1 H11 sing N N 86 DMS C1 H12 sing N N 87 DMS C1 H13 sing N N 88 DMS C2 H21 sing N N 89 DMS C2 H22 sing N N 90 DMS C2 H23 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 K4R N1 C1 trip N N 182 K4R C1 C2 sing N N 183 K4R C2 N2 doub Y N 184 K4R N2 N3 sing Y N 185 K4R N3 C3 sing Y N 186 K4R C3 C4 doub Y N 187 K4R C4 C5 sing Y N 188 K4R C5 C6 doub Y N 189 K4R C6 C7 sing Y N 190 K4R C7 C8 doub Y N 191 K4R C2 C8 sing Y N 192 K4R C3 C8 sing Y N 193 K4R N3 H1 sing N N 194 K4R C4 H2 sing N N 195 K4R C5 H3 sing N N 196 K4R C6 H4 sing N N 197 K4R C7 H5 sing N N 198 LEU N CA sing N N 199 LEU N H sing N N 200 LEU N H2 sing N N 201 LEU CA C sing N N 202 LEU CA CB sing N N 203 LEU CA HA sing N N 204 LEU C O doub N N 205 LEU C OXT sing N N 206 LEU CB CG sing N N 207 LEU CB HB2 sing N N 208 LEU CB HB3 sing N N 209 LEU CG CD1 sing N N 210 LEU CG CD2 sing N N 211 LEU CG HG sing N N 212 LEU CD1 HD11 sing N N 213 LEU CD1 HD12 sing N N 214 LEU CD1 HD13 sing N N 215 LEU CD2 HD21 sing N N 216 LEU CD2 HD22 sing N N 217 LEU CD2 HD23 sing N N 218 LEU OXT HXT sing N N 219 LYS N CA sing N N 220 LYS N H sing N N 221 LYS N H2 sing N N 222 LYS CA C sing N N 223 LYS CA CB sing N N 224 LYS CA HA sing N N 225 LYS C O doub N N 226 LYS C OXT sing N N 227 LYS CB CG sing N N 228 LYS CB HB2 sing N N 229 LYS CB HB3 sing N N 230 LYS CG CD sing N N 231 LYS CG HG2 sing N N 232 LYS CG HG3 sing N N 233 LYS CD CE sing N N 234 LYS CD HD2 sing N N 235 LYS CD HD3 sing N N 236 LYS CE NZ sing N N 237 LYS CE HE2 sing N N 238 LYS CE HE3 sing N N 239 LYS NZ HZ1 sing N N 240 LYS NZ HZ2 sing N N 241 LYS NZ HZ3 sing N N 242 LYS OXT HXT sing N N 243 MET N CA sing N N 244 MET N H sing N N 245 MET N H2 sing N N 246 MET CA C sing N N 247 MET CA CB sing N N 248 MET CA HA sing N N 249 MET C O doub N N 250 MET C OXT sing N N 251 MET CB CG sing N N 252 MET CB HB2 sing N N 253 MET CB HB3 sing N N 254 MET CG SD sing N N 255 MET CG HG2 sing N N 256 MET CG HG3 sing N N 257 MET SD CE sing N N 258 MET CE HE1 sing N N 259 MET CE HE2 sing N N 260 MET CE HE3 sing N N 261 MET OXT HXT sing N N 262 PHE N CA sing N N 263 PHE N H sing N N 264 PHE N H2 sing N N 265 PHE CA C sing N N 266 PHE CA CB sing N N 267 PHE CA HA sing N N 268 PHE C O doub N N 269 PHE C OXT sing N N 270 PHE CB CG sing N N 271 PHE CB HB2 sing N N 272 PHE CB HB3 sing N N 273 PHE CG CD1 doub Y N 274 PHE CG CD2 sing Y N 275 PHE CD1 CE1 sing Y N 276 PHE CD1 HD1 sing N N 277 PHE CD2 CE2 doub Y N 278 PHE CD2 HD2 sing N N 279 PHE CE1 CZ doub Y N 280 PHE CE1 HE1 sing N N 281 PHE CE2 CZ sing Y N 282 PHE CE2 HE2 sing N N 283 PHE CZ HZ sing N N 284 PHE OXT HXT sing N N 285 PRO N CA sing N N 286 PRO N CD sing N N 287 PRO N H sing N N 288 PRO CA C sing N N 289 PRO CA CB sing N N 290 PRO CA HA sing N N 291 PRO C O doub N N 292 PRO C OXT sing N N 293 PRO CB CG sing N N 294 PRO CB HB2 sing N N 295 PRO CB HB3 sing N N 296 PRO CG CD sing N N 297 PRO CG HG2 sing N N 298 PRO CG HG3 sing N N 299 PRO CD HD2 sing N N 300 PRO CD HD3 sing N N 301 PRO OXT HXT sing N N 302 SER N CA sing N N 303 SER N H sing N N 304 SER N H2 sing N N 305 SER CA C sing N N 306 SER CA CB sing N N 307 SER CA HA sing N N 308 SER C O doub N N 309 SER C OXT sing N N 310 SER CB OG sing N N 311 SER CB HB2 sing N N 312 SER CB HB3 sing N N 313 SER OG HG sing N N 314 SER OXT HXT sing N N 315 THR N CA sing N N 316 THR N H sing N N 317 THR N H2 sing N N 318 THR CA C sing N N 319 THR CA CB sing N N 320 THR CA HA sing N N 321 THR C O doub N N 322 THR C OXT sing N N 323 THR CB OG1 sing N N 324 THR CB CG2 sing N N 325 THR CB HB sing N N 326 THR OG1 HG1 sing N N 327 THR CG2 HG21 sing N N 328 THR CG2 HG22 sing N N 329 THR CG2 HG23 sing N N 330 THR OXT HXT sing N N 331 TRP N CA sing N N 332 TRP N H sing N N 333 TRP N H2 sing N N 334 TRP CA C sing N N 335 TRP CA CB sing N N 336 TRP CA HA sing N N 337 TRP C O doub N N 338 TRP C OXT sing N N 339 TRP CB CG sing N N 340 TRP CB HB2 sing N N 341 TRP CB HB3 sing N N 342 TRP CG CD1 doub Y N 343 TRP CG CD2 sing Y N 344 TRP CD1 NE1 sing Y N 345 TRP CD1 HD1 sing N N 346 TRP CD2 CE2 doub Y N 347 TRP CD2 CE3 sing Y N 348 TRP NE1 CE2 sing Y N 349 TRP NE1 HE1 sing N N 350 TRP CE2 CZ2 sing Y N 351 TRP CE3 CZ3 doub Y N 352 TRP CE3 HE3 sing N N 353 TRP CZ2 CH2 doub Y N 354 TRP CZ2 HZ2 sing N N 355 TRP CZ3 CH2 sing Y N 356 TRP CZ3 HZ3 sing N N 357 TRP CH2 HH2 sing N N 358 TRP OXT HXT sing N N 359 TYR N CA sing N N 360 TYR N H sing N N 361 TYR N H2 sing N N 362 TYR CA C sing N N 363 TYR CA CB sing N N 364 TYR CA HA sing N N 365 TYR C O doub N N 366 TYR C OXT sing N N 367 TYR CB CG sing N N 368 TYR CB HB2 sing N N 369 TYR CB HB3 sing N N 370 TYR CG CD1 doub Y N 371 TYR CG CD2 sing Y N 372 TYR CD1 CE1 sing Y N 373 TYR CD1 HD1 sing N N 374 TYR CD2 CE2 doub Y N 375 TYR CD2 HD2 sing N N 376 TYR CE1 CZ doub Y N 377 TYR CE1 HE1 sing N N 378 TYR CE2 CZ sing Y N 379 TYR CE2 HE2 sing N N 380 TYR CZ OH sing N N 381 TYR OH HH sing N N 382 TYR OXT HXT sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171399 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_id G_1002289 _pdbx_deposit_group.group_description 'Crystallographic fragment screening of ZIKV NS2B-NS3 protease' _pdbx_deposit_group.group_title 'PanDDA analysis group deposition' _pdbx_deposit_group.group_type 'changed state' # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id K4R _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id K4R _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8PN6 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7H25 _atom_sites.fract_transf_matrix[1][1] 0.023499 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004619 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_