data_7HDF # _entry.id 7HDF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7HDF pdb_00007hdf 10.2210/pdb7hdf/pdb WWPDB D_1001407333 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-06-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7HDF _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2024-08-15 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jaimefraser@gmail.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Correy, G.J.' 1 ? 'Fraser, J.S.' 2 ? # _citation.id primary _citation.title ;Exploration of structure-activity relationships for the SARS-CoV-2 macrodomain from shape-based fragment linking and active learning. ; _citation.journal_abbrev 'Sci Adv' _citation.journal_volume 11 _citation.page_first eads7187 _citation.page_last eads7187 _citation.year 2025 _citation.pdbx_database_id_PubMed 40435250 _citation.pdbx_database_id_DOI 10.1126/sciadv.ads7187 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2375-2548 _citation.journal_id_CSD ? _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Correy, G.J.' 0000-0001-5155-7325 1 primary 'Rachman, M.M.' 0000-0003-3671-8885 2 primary 'Togo, T.' 0000-0003-0243-0760 3 primary 'Gahbauer, S.' 0000-0002-3115-9757 4 primary 'Doruk, Y.U.' 0000-0002-3388-7803 5 primary 'Stevens, M.G.V.' 0009-0004-9732-0349 6 primary 'Jaishankar, P.' 0009-0005-2013-8941 7 primary 'Kelley, B.' ? 8 primary 'Goldman, B.' 0009-0006-6465-6959 9 primary 'Schmidt, M.' ? 10 primary 'Kramer, T.' 0009-0002-5932-7406 11 primary 'Radchenko, D.S.' 0000-0001-5444-7754 12 primary 'Moroz, Y.S.' 0000-0001-6073-002X 13 primary 'Ashworth, A.' 0000-0003-1446-7878 14 primary 'Riley, P.' 0000-0003-0797-0272 15 primary 'Shoichet, B.K.' 0000-0002-6098-7367 16 primary 'Renslo, A.R.' 0000-0002-1240-2846 17 primary 'Walters, W.P.' 0000-0003-2860-7958 18 primary 'Fraser, J.S.' 0000-0002-5080-2859 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-structural protein 3' 18178.766 2 '3.4.19.121, 3.4.22.-' ? ? 'HIS6 purification tag and linker (MHHHHHHSSGVDLGTENLYFQ) cleaved with TEV protease' 2 non-polymer syn 'DIMETHYL SULFOXIDE' 78.133 1 ? ? ? ? 3 non-polymer syn '[(2R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-yl]methanol' 247.296 2 ? ? ? ? 4 water nat water 18.015 410 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'nsp3, PL2-PRO, Papain-like protease, Papain-like proteinase, PL-PRO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_seq_one_letter_code_can ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DIMETHYL SULFOXIDE' DMS 3 '[(2R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-yl]methanol' A1A77 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 VAL n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 THR n 1 14 ASP n 1 15 ASN n 1 16 VAL n 1 17 TYR n 1 18 ILE n 1 19 LYS n 1 20 ASN n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 VAL n 1 42 TYR n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 ASN n 1 60 ALA n 1 61 MET n 1 62 GLN n 1 63 VAL n 1 64 GLU n 1 65 SER n 1 66 ASP n 1 67 ASP n 1 68 TYR n 1 69 ILE n 1 70 ALA n 1 71 THR n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 VAL n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 HIS n 1 92 CYS n 1 93 LEU n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 GLU n 1 115 ASN n 1 116 PHE n 1 117 ASN n 1 118 GLN n 1 119 HIS n 1 120 GLU n 1 121 VAL n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 PHE n 1 133 GLY n 1 134 ALA n 1 135 ASP n 1 136 PRO n 1 137 ILE n 1 138 HIS n 1 139 SER n 1 140 LEU n 1 141 ARG n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 ASP n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 THR n 1 150 ASN n 1 151 VAL n 1 152 TYR n 1 153 LEU n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 ASP n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 ASP n 1 163 LYS n 1 164 LEU n 1 165 VAL n 1 166 SER n 1 167 SER n 1 168 PHE n 1 169 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1A77 non-polymer . '[(2R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-yl]methanol' ? 'C12 H17 N5 O' 247.296 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMS non-polymer . 'DIMETHYL SULFOXIDE' ? 'C2 H6 O S' 78.133 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n B 1 1 SER 1 1 1 SER SER B . n B 1 2 MET 2 2 2 MET MET B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 TYR 17 17 17 TYR TYR B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 HIS 45 45 45 HIS HIS B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 ASN 58 58 58 ASN ASN B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 MET 61 61 61 MET MET B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 TYR 68 68 68 TYR TYR B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 ASN 72 72 72 ASN ASN B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 PRO 74 74 74 PRO PRO B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 CYS 81 81 81 CYS CYS B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 HIS 91 91 91 HIS HIS B . n B 1 92 CYS 92 92 92 CYS CYS B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 HIS 94 94 94 HIS HIS B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 PRO 98 98 98 PRO PRO B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 TYR 113 113 113 TYR TYR B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 PHE 116 116 116 PHE PHE B . n B 1 117 ASN 117 117 117 ASN ASN B . n B 1 118 GLN 118 118 118 GLN GLN B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 GLU 120 120 120 GLU GLU B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 PRO 125 125 125 PRO PRO B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 SER 128 128 128 SER SER B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 ILE 131 131 131 ILE ILE B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 GLY 133 133 133 GLY GLY B . n B 1 134 ALA 134 134 134 ALA ALA B . n B 1 135 ASP 135 135 135 ASP ASP B . n B 1 136 PRO 136 136 136 PRO PRO B . n B 1 137 ILE 137 137 137 ILE ILE B . n B 1 138 HIS 138 138 138 HIS HIS B . n B 1 139 SER 139 139 139 SER SER B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 VAL 142 142 142 VAL VAL B . n B 1 143 CYS 143 143 143 CYS CYS B . n B 1 144 VAL 144 144 144 VAL VAL B . n B 1 145 ASP 145 145 145 ASP ASP B . n B 1 146 THR 146 146 146 THR THR B . n B 1 147 VAL 147 147 147 VAL VAL B . n B 1 148 ARG 148 148 148 ARG ARG B . n B 1 149 THR 149 149 149 THR THR B . n B 1 150 ASN 150 150 150 ASN ASN B . n B 1 151 VAL 151 151 151 VAL VAL B . n B 1 152 TYR 152 152 152 TYR TYR B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 ALA 154 154 154 ALA ALA B . n B 1 155 VAL 155 155 155 VAL VAL B . n B 1 156 PHE 156 156 156 PHE PHE B . n B 1 157 ASP 157 157 157 ASP ASP B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 ASN 159 159 159 ASN ASN B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 TYR 161 161 161 TYR TYR B . n B 1 162 ASP 162 162 162 ASP ASP B . n B 1 163 LYS 163 163 163 LYS LYS B . n B 1 164 LEU 164 164 164 LEU LEU B . n B 1 165 VAL 165 165 165 VAL VAL B . n B 1 166 SER 166 166 166 SER SER B . n B 1 167 SER 167 167 167 SER SER B . n B 1 168 PHE 168 168 168 PHE PHE B . n B 1 169 LEU 169 169 169 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS 1 401 401 DMS DMS A . D 3 A1A77 1 402 201 A1A77 LA1 A . E 3 A1A77 1 403 301 A1A77 LA2 A . F 4 HOH 1 501 105 HOH HOH A . F 4 HOH 2 502 93 HOH HOH A . F 4 HOH 3 503 196 HOH HOH A . F 4 HOH 4 504 229 HOH HOH A . F 4 HOH 5 505 292 HOH HOH A . F 4 HOH 6 506 281 HOH HOH A . F 4 HOH 7 507 493 HOH HOH A . F 4 HOH 8 508 625 HOH HOH A . F 4 HOH 9 509 209 HOH HOH A . F 4 HOH 10 510 85 HOH HOH A . F 4 HOH 11 511 86 HOH HOH A . F 4 HOH 12 512 8 HOH HOH A . F 4 HOH 13 513 39 HOH HOH A . F 4 HOH 14 514 109 HOH HOH A . F 4 HOH 15 515 76 HOH HOH A . F 4 HOH 16 516 236 HOH HOH A . F 4 HOH 17 517 1094 HOH HOH A . F 4 HOH 18 518 662 HOH HOH A . F 4 HOH 19 519 151 HOH HOH A . F 4 HOH 20 520 1295 HOH HOH A . F 4 HOH 21 521 124 HOH HOH A . F 4 HOH 22 522 140 HOH HOH A . F 4 HOH 23 523 24 HOH HOH A . F 4 HOH 24 524 225 HOH HOH A . F 4 HOH 25 525 15 HOH HOH A . F 4 HOH 26 526 136 HOH HOH A . F 4 HOH 27 527 661 HOH HOH A . F 4 HOH 28 528 153 HOH HOH A . F 4 HOH 29 529 164 HOH HOH A . F 4 HOH 30 530 241 HOH HOH A . F 4 HOH 31 531 278 HOH HOH A . F 4 HOH 32 532 393 HOH HOH A . F 4 HOH 33 533 1301 HOH HOH A . F 4 HOH 34 534 964 HOH HOH A . F 4 HOH 35 535 192 HOH HOH A . F 4 HOH 36 536 247 HOH HOH A . F 4 HOH 37 537 122 HOH HOH A . F 4 HOH 38 538 1300 HOH HOH A . F 4 HOH 39 539 337 HOH HOH A . F 4 HOH 40 540 296 HOH HOH A . F 4 HOH 41 541 469 HOH HOH A . F 4 HOH 42 542 320 HOH HOH A . F 4 HOH 43 543 42 HOH HOH A . F 4 HOH 44 544 36 HOH HOH A . F 4 HOH 45 545 630 HOH HOH A . F 4 HOH 46 546 139 HOH HOH A . F 4 HOH 47 547 92 HOH HOH A . F 4 HOH 48 548 57 HOH HOH A . F 4 HOH 49 549 1283 HOH HOH A . F 4 HOH 50 550 354 HOH HOH A . F 4 HOH 51 551 396 HOH HOH A . F 4 HOH 52 552 165 HOH HOH A . F 4 HOH 53 553 17 HOH HOH A . F 4 HOH 54 554 33 HOH HOH A . F 4 HOH 55 555 2 HOH HOH A . F 4 HOH 56 556 1290 HOH HOH A . F 4 HOH 57 557 1308 HOH HOH A . F 4 HOH 58 558 66 HOH HOH A . F 4 HOH 59 559 21 HOH HOH A . F 4 HOH 60 560 81 HOH HOH A . F 4 HOH 61 561 45 HOH HOH A . F 4 HOH 62 562 19 HOH HOH A . F 4 HOH 63 563 102 HOH HOH A . F 4 HOH 64 564 18 HOH HOH A . F 4 HOH 65 565 162 HOH HOH A . F 4 HOH 66 566 159 HOH HOH A . F 4 HOH 67 567 939 HOH HOH A . F 4 HOH 68 568 46 HOH HOH A . F 4 HOH 69 569 138 HOH HOH A . F 4 HOH 70 570 186 HOH HOH A . F 4 HOH 71 571 5 HOH HOH A . F 4 HOH 72 572 169 HOH HOH A . F 4 HOH 73 573 56 HOH HOH A . F 4 HOH 74 574 155 HOH HOH A . F 4 HOH 75 575 6 HOH HOH A . F 4 HOH 76 576 49 HOH HOH A . F 4 HOH 77 577 35 HOH HOH A . F 4 HOH 78 578 1310 HOH HOH A . F 4 HOH 79 579 27 HOH HOH A . F 4 HOH 80 580 4 HOH HOH A . F 4 HOH 81 581 409 HOH HOH A . F 4 HOH 82 582 134 HOH HOH A . F 4 HOH 83 583 405 HOH HOH A . F 4 HOH 84 584 218 HOH HOH A . F 4 HOH 85 585 461 HOH HOH A . F 4 HOH 86 586 154 HOH HOH A . F 4 HOH 87 587 148 HOH HOH A . F 4 HOH 88 588 366 HOH HOH A . F 4 HOH 89 589 78 HOH HOH A . F 4 HOH 90 590 1309 HOH HOH A . F 4 HOH 91 591 195 HOH HOH A . F 4 HOH 92 592 26 HOH HOH A . F 4 HOH 93 593 83 HOH HOH A . F 4 HOH 94 594 1315 HOH HOH A . F 4 HOH 95 595 1 HOH HOH A . F 4 HOH 96 596 12 HOH HOH A . F 4 HOH 97 597 116 HOH HOH A . F 4 HOH 98 598 376 HOH HOH A . F 4 HOH 99 599 58 HOH HOH A . F 4 HOH 100 600 333 HOH HOH A . F 4 HOH 101 601 67 HOH HOH A . F 4 HOH 102 602 3 HOH HOH A . F 4 HOH 103 603 303 HOH HOH A . F 4 HOH 104 604 1313 HOH HOH A . F 4 HOH 105 605 34 HOH HOH A . F 4 HOH 106 606 74 HOH HOH A . F 4 HOH 107 607 1275 HOH HOH A . F 4 HOH 108 608 68 HOH HOH A . F 4 HOH 109 609 397 HOH HOH A . F 4 HOH 110 610 121 HOH HOH A . F 4 HOH 111 611 7 HOH HOH A . F 4 HOH 112 612 25 HOH HOH A . F 4 HOH 113 613 132 HOH HOH A . F 4 HOH 114 614 1068 HOH HOH A . F 4 HOH 115 615 351 HOH HOH A . F 4 HOH 116 616 123 HOH HOH A . F 4 HOH 117 617 199 HOH HOH A . F 4 HOH 118 618 212 HOH HOH A . F 4 HOH 119 619 53 HOH HOH A . F 4 HOH 120 620 1279 HOH HOH A . F 4 HOH 121 621 95 HOH HOH A . F 4 HOH 122 622 156 HOH HOH A . F 4 HOH 123 623 125 HOH HOH A . F 4 HOH 124 624 115 HOH HOH A . F 4 HOH 125 625 70 HOH HOH A . F 4 HOH 126 626 1289 HOH HOH A . F 4 HOH 127 627 96 HOH HOH A . F 4 HOH 128 628 381 HOH HOH A . F 4 HOH 129 629 582 HOH HOH A . F 4 HOH 130 630 1222 HOH HOH A . F 4 HOH 131 631 51 HOH HOH A . F 4 HOH 132 632 1286 HOH HOH A . F 4 HOH 133 633 73 HOH HOH A . F 4 HOH 134 634 1296 HOH HOH A . F 4 HOH 135 635 1189 HOH HOH A . F 4 HOH 136 636 16 HOH HOH A . F 4 HOH 137 637 71 HOH HOH A . F 4 HOH 138 638 40 HOH HOH A . F 4 HOH 139 639 952 HOH HOH A . F 4 HOH 140 640 80 HOH HOH A . F 4 HOH 141 641 1238 HOH HOH A . F 4 HOH 142 642 94 HOH HOH A . F 4 HOH 143 643 944 HOH HOH A . F 4 HOH 144 644 576 HOH HOH A . F 4 HOH 145 645 97 HOH HOH A . F 4 HOH 146 646 188 HOH HOH A . F 4 HOH 147 647 104 HOH HOH A . F 4 HOH 148 648 79 HOH HOH A . F 4 HOH 149 649 330 HOH HOH A . F 4 HOH 150 650 2 HOH HOH A . F 4 HOH 151 651 107 HOH HOH A . F 4 HOH 152 652 1119 HOH HOH A . F 4 HOH 153 653 1134 HOH HOH A . F 4 HOH 154 654 509 HOH HOH A . F 4 HOH 155 655 163 HOH HOH A . F 4 HOH 156 656 726 HOH HOH A . F 4 HOH 157 657 756 HOH HOH A . F 4 HOH 158 658 408 HOH HOH A . F 4 HOH 159 659 3 HOH HOH A . F 4 HOH 160 660 63 HOH HOH A . F 4 HOH 161 661 361 HOH HOH A . F 4 HOH 162 662 126 HOH HOH A . F 4 HOH 163 663 801 HOH HOH A . F 4 HOH 164 664 319 HOH HOH A . F 4 HOH 165 665 1307 HOH HOH A . F 4 HOH 166 666 280 HOH HOH A . F 4 HOH 167 667 556 HOH HOH A . F 4 HOH 168 668 1276 HOH HOH A . F 4 HOH 169 669 250 HOH HOH A . F 4 HOH 170 670 326 HOH HOH A . F 4 HOH 171 671 342 HOH HOH A . F 4 HOH 172 672 267 HOH HOH A . F 4 HOH 173 673 1306 HOH HOH A . F 4 HOH 174 674 1287 HOH HOH A . F 4 HOH 175 675 370 HOH HOH A . F 4 HOH 176 676 1314 HOH HOH A . F 4 HOH 177 677 695 HOH HOH A . F 4 HOH 178 678 135 HOH HOH A . F 4 HOH 179 679 674 HOH HOH A . F 4 HOH 180 680 919 HOH HOH A . F 4 HOH 181 681 202 HOH HOH A . F 4 HOH 182 682 521 HOH HOH A . F 4 HOH 183 683 224 HOH HOH A . F 4 HOH 184 684 356 HOH HOH A . F 4 HOH 185 685 309 HOH HOH A . F 4 HOH 186 686 315 HOH HOH A . F 4 HOH 187 687 318 HOH HOH A . F 4 HOH 188 688 1299 HOH HOH A . F 4 HOH 189 689 711 HOH HOH A . F 4 HOH 190 690 805 HOH HOH A . F 4 HOH 191 691 331 HOH HOH A . F 4 HOH 192 692 263 HOH HOH A . F 4 HOH 193 693 152 HOH HOH A . F 4 HOH 194 694 941 HOH HOH A . F 4 HOH 195 695 208 HOH HOH A . F 4 HOH 196 696 1284 HOH HOH A . F 4 HOH 197 697 1071 HOH HOH A . F 4 HOH 198 698 180 HOH HOH A . F 4 HOH 199 699 350 HOH HOH A . F 4 HOH 200 700 363 HOH HOH A . F 4 HOH 201 701 371 HOH HOH A . F 4 HOH 202 702 313 HOH HOH A . F 4 HOH 203 703 185 HOH HOH A . F 4 HOH 204 704 429 HOH HOH A . F 4 HOH 205 705 1074 HOH HOH A . F 4 HOH 206 706 772 HOH HOH A . F 4 HOH 207 707 346 HOH HOH A . F 4 HOH 208 708 1292 HOH HOH A . F 4 HOH 209 709 1078 HOH HOH A . G 4 HOH 1 201 64 HOH HOH B . G 4 HOH 2 202 398 HOH HOH B . G 4 HOH 3 203 358 HOH HOH B . G 4 HOH 4 204 900 HOH HOH B . G 4 HOH 5 205 364 HOH HOH B . G 4 HOH 6 206 654 HOH HOH B . G 4 HOH 7 207 549 HOH HOH B . G 4 HOH 8 208 240 HOH HOH B . G 4 HOH 9 209 1249 HOH HOH B . G 4 HOH 10 210 353 HOH HOH B . G 4 HOH 11 211 758 HOH HOH B . G 4 HOH 12 212 264 HOH HOH B . G 4 HOH 13 213 743 HOH HOH B . G 4 HOH 14 214 276 HOH HOH B . G 4 HOH 15 215 343 HOH HOH B . G 4 HOH 16 216 120 HOH HOH B . G 4 HOH 17 217 50 HOH HOH B . G 4 HOH 18 218 452 HOH HOH B . G 4 HOH 19 219 232 HOH HOH B . G 4 HOH 20 220 531 HOH HOH B . G 4 HOH 21 221 131 HOH HOH B . G 4 HOH 22 222 54 HOH HOH B . G 4 HOH 23 223 282 HOH HOH B . G 4 HOH 24 224 272 HOH HOH B . G 4 HOH 25 225 332 HOH HOH B . G 4 HOH 26 226 1278 HOH HOH B . G 4 HOH 27 227 82 HOH HOH B . G 4 HOH 28 228 444 HOH HOH B . G 4 HOH 29 229 75 HOH HOH B . G 4 HOH 30 230 1140 HOH HOH B . G 4 HOH 31 231 166 HOH HOH B . G 4 HOH 32 232 128 HOH HOH B . G 4 HOH 33 233 1312 HOH HOH B . G 4 HOH 34 234 127 HOH HOH B . G 4 HOH 35 235 205 HOH HOH B . G 4 HOH 36 236 325 HOH HOH B . G 4 HOH 37 237 181 HOH HOH B . G 4 HOH 38 238 69 HOH HOH B . G 4 HOH 39 239 723 HOH HOH B . G 4 HOH 40 240 110 HOH HOH B . G 4 HOH 41 241 60 HOH HOH B . G 4 HOH 42 242 1 HOH HOH B . G 4 HOH 43 243 30 HOH HOH B . G 4 HOH 44 244 129 HOH HOH B . G 4 HOH 45 245 300 HOH HOH B . G 4 HOH 46 246 14 HOH HOH B . G 4 HOH 47 247 9 HOH HOH B . G 4 HOH 48 248 252 HOH HOH B . G 4 HOH 49 249 133 HOH HOH B . G 4 HOH 50 250 47 HOH HOH B . G 4 HOH 51 251 143 HOH HOH B . G 4 HOH 52 252 31 HOH HOH B . G 4 HOH 53 253 52 HOH HOH B . G 4 HOH 54 254 72 HOH HOH B . G 4 HOH 55 255 144 HOH HOH B . G 4 HOH 56 256 347 HOH HOH B . G 4 HOH 57 257 302 HOH HOH B . G 4 HOH 58 258 41 HOH HOH B . G 4 HOH 59 259 172 HOH HOH B . G 4 HOH 60 260 20 HOH HOH B . G 4 HOH 61 261 271 HOH HOH B . G 4 HOH 62 262 62 HOH HOH B . G 4 HOH 63 263 10 HOH HOH B . G 4 HOH 64 264 61 HOH HOH B . G 4 HOH 65 265 150 HOH HOH B . G 4 HOH 66 266 231 HOH HOH B . G 4 HOH 67 267 117 HOH HOH B . G 4 HOH 68 268 243 HOH HOH B . G 4 HOH 69 269 391 HOH HOH B . G 4 HOH 70 270 59 HOH HOH B . G 4 HOH 71 271 77 HOH HOH B . G 4 HOH 72 272 103 HOH HOH B . G 4 HOH 73 273 84 HOH HOH B . G 4 HOH 74 274 114 HOH HOH B . G 4 HOH 75 275 11 HOH HOH B . G 4 HOH 76 276 1277 HOH HOH B . G 4 HOH 77 277 242 HOH HOH B . G 4 HOH 78 278 175 HOH HOH B . G 4 HOH 79 279 1106 HOH HOH B . G 4 HOH 80 280 287 HOH HOH B . G 4 HOH 81 281 43 HOH HOH B . G 4 HOH 82 282 1305 HOH HOH B . G 4 HOH 83 283 22 HOH HOH B . G 4 HOH 84 284 221 HOH HOH B . G 4 HOH 85 285 106 HOH HOH B . G 4 HOH 86 286 13 HOH HOH B . G 4 HOH 87 287 147 HOH HOH B . G 4 HOH 88 288 1066 HOH HOH B . G 4 HOH 89 289 635 HOH HOH B . G 4 HOH 90 290 416 HOH HOH B . G 4 HOH 91 291 89 HOH HOH B . G 4 HOH 92 292 141 HOH HOH B . G 4 HOH 93 293 137 HOH HOH B . G 4 HOH 94 294 387 HOH HOH B . G 4 HOH 95 295 88 HOH HOH B . G 4 HOH 96 296 297 HOH HOH B . G 4 HOH 97 297 235 HOH HOH B . G 4 HOH 98 298 99 HOH HOH B . G 4 HOH 99 299 1291 HOH HOH B . G 4 HOH 100 300 160 HOH HOH B . G 4 HOH 101 301 316 HOH HOH B . G 4 HOH 102 302 32 HOH HOH B . G 4 HOH 103 303 299 HOH HOH B . G 4 HOH 104 304 341 HOH HOH B . G 4 HOH 105 305 112 HOH HOH B . G 4 HOH 106 306 216 HOH HOH B . G 4 HOH 107 307 38 HOH HOH B . G 4 HOH 108 308 311 HOH HOH B . G 4 HOH 109 309 220 HOH HOH B . G 4 HOH 110 310 48 HOH HOH B . G 4 HOH 111 311 101 HOH HOH B . G 4 HOH 112 312 704 HOH HOH B . G 4 HOH 113 313 1126 HOH HOH B . G 4 HOH 114 314 142 HOH HOH B . G 4 HOH 115 315 118 HOH HOH B . G 4 HOH 116 316 37 HOH HOH B . G 4 HOH 117 317 91 HOH HOH B . G 4 HOH 118 318 215 HOH HOH B . G 4 HOH 119 319 44 HOH HOH B . G 4 HOH 120 320 1285 HOH HOH B . G 4 HOH 121 321 23 HOH HOH B . G 4 HOH 122 322 170 HOH HOH B . G 4 HOH 123 323 161 HOH HOH B . G 4 HOH 124 324 182 HOH HOH B . G 4 HOH 125 325 28 HOH HOH B . G 4 HOH 126 326 177 HOH HOH B . G 4 HOH 127 327 100 HOH HOH B . G 4 HOH 128 328 1294 HOH HOH B . G 4 HOH 129 329 1274 HOH HOH B . G 4 HOH 130 330 29 HOH HOH B . G 4 HOH 131 331 339 HOH HOH B . G 4 HOH 132 332 717 HOH HOH B . G 4 HOH 133 333 55 HOH HOH B . G 4 HOH 134 334 445 HOH HOH B . G 4 HOH 135 335 98 HOH HOH B . G 4 HOH 136 336 334 HOH HOH B . G 4 HOH 137 337 234 HOH HOH B . G 4 HOH 138 338 197 HOH HOH B . G 4 HOH 139 339 207 HOH HOH B . G 4 HOH 140 340 65 HOH HOH B . G 4 HOH 141 341 619 HOH HOH B . G 4 HOH 142 342 1293 HOH HOH B . G 4 HOH 143 343 178 HOH HOH B . G 4 HOH 144 344 960 HOH HOH B . G 4 HOH 145 345 362 HOH HOH B . G 4 HOH 146 346 90 HOH HOH B . G 4 HOH 147 347 463 HOH HOH B . G 4 HOH 148 348 191 HOH HOH B . G 4 HOH 149 349 335 HOH HOH B . G 4 HOH 150 350 304 HOH HOH B . G 4 HOH 151 351 1304 HOH HOH B . G 4 HOH 152 352 623 HOH HOH B . G 4 HOH 153 353 1046 HOH HOH B . G 4 HOH 154 354 1280 HOH HOH B . G 4 HOH 155 355 87 HOH HOH B . G 4 HOH 156 356 203 HOH HOH B . G 4 HOH 157 357 290 HOH HOH B . G 4 HOH 158 358 541 HOH HOH B . G 4 HOH 159 359 1077 HOH HOH B . G 4 HOH 160 360 389 HOH HOH B . G 4 HOH 161 361 479 HOH HOH B . G 4 HOH 162 362 718 HOH HOH B . G 4 HOH 163 363 283 HOH HOH B . G 4 HOH 164 364 1072 HOH HOH B . G 4 HOH 165 365 1316 HOH HOH B . G 4 HOH 166 366 898 HOH HOH B . G 4 HOH 167 367 340 HOH HOH B . G 4 HOH 168 368 667 HOH HOH B . G 4 HOH 169 369 373 HOH HOH B . G 4 HOH 170 370 291 HOH HOH B . G 4 HOH 171 371 615 HOH HOH B . G 4 HOH 172 372 1303 HOH HOH B . G 4 HOH 173 373 190 HOH HOH B . G 4 HOH 174 374 310 HOH HOH B . G 4 HOH 175 375 149 HOH HOH B . G 4 HOH 176 376 183 HOH HOH B . G 4 HOH 177 377 431 HOH HOH B . G 4 HOH 178 378 1173 HOH HOH B . G 4 HOH 179 379 1163 HOH HOH B . G 4 HOH 180 380 418 HOH HOH B . G 4 HOH 181 381 1000 HOH HOH B . G 4 HOH 182 382 1311 HOH HOH B . G 4 HOH 183 383 176 HOH HOH B . G 4 HOH 184 384 424 HOH HOH B . G 4 HOH 185 385 491 HOH HOH B . G 4 HOH 186 386 248 HOH HOH B . G 4 HOH 187 387 470 HOH HOH B . G 4 HOH 188 388 1298 HOH HOH B . G 4 HOH 189 389 981 HOH HOH B . G 4 HOH 190 390 265 HOH HOH B . G 4 HOH 191 391 184 HOH HOH B . G 4 HOH 192 392 360 HOH HOH B . G 4 HOH 193 393 410 HOH HOH B . G 4 HOH 194 394 355 HOH HOH B . G 4 HOH 195 395 566 HOH HOH B . G 4 HOH 196 396 314 HOH HOH B . G 4 HOH 197 397 274 HOH HOH B . G 4 HOH 198 398 157 HOH HOH B . G 4 HOH 199 399 792 HOH HOH B . G 4 HOH 200 400 321 HOH HOH B . G 4 HOH 201 401 558 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.21.1_5286 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 Aimless 0.7.15 02/11/23 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.28 'Apr. 15, 2021' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS 'Jun 30, 2023' 'Jun. 30, 2023' program 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de 'data reduction' http://xds.mpimf-heidelberg.mpg.de ? ? 5 PHASER 2.8.3 'May 17, 2020' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing https://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software ? ? # _cell.entry_id 7HDF _cell.length_a 88.727 _cell.length_b 88.727 _cell.length_c 39.577 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HDF _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 7HDF # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.7 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '100 mM CHES, 28% PEG 3000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.pdbx_collection_date 2023-05-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88557 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 0.88557 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7HDF _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.360 _reflns.d_resolution_high 1.000 _reflns.number_obs 165215 _reflns.number_all ? _reflns.percent_possible_obs 99.400 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.800 _reflns.B_iso_Wilson_estimate 11.510 _reflns.pdbx_redundancy 6.400 _reflns.pdbx_Rrim_I_all 0.048 _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 1053356 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.000 1.020 ? 33493 7336 ? 0.819 ? ? ? 4.600 ? 1.200 ? ? ? ? ? ? 89.100 0.922 0.412 0.783 1 2 5.480 44.360 ? 7552 1097 ? 0.029 ? ? ? 6.900 ? 50.600 ? ? ? ? ? ? 99.900 0.031 0.012 0.999 # _refine.entry_id 7HDF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.0000 _refine.ls_d_res_low 44.3600 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3500 _refine.ls_number_reflns_obs 165141 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1417 _refine.ls_R_factor_R_work 0.1411 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1539 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_number_reflns_R_free 7961 _refine.ls_number_reflns_R_work 157180 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.2134 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.790 _refine.B_iso_min 7.940 _refine.pdbx_overall_phase_error 15.8700 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.0000 _refine_hist.d_res_low 44.3600 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 410 _refine_hist.number_atoms_total 2962 _refine_hist.pdbx_number_residues_total 336 _refine_hist.pdbx_B_iso_mean_ligand 22.99 _refine_hist.pdbx_B_iso_mean_solvent 29.06 _refine_hist.pdbx_number_atoms_protein 2542 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 1.0000 1.0100 30 87.0000 4587 . 0.3434 0.3042 . 236 0.0000 4823 . 'X-RAY DIFFRACTION' 1.0100 1.0200 30 95.0000 5020 . 0.2722 0.2889 . 223 0.0000 5243 . 'X-RAY DIFFRACTION' 1.0200 1.0400 30 100.0000 5239 . 0.2296 0.2193 . 258 0.0000 5497 . 'X-RAY DIFFRACTION' 1.0400 1.0500 30 100.0000 5191 . 0.2048 0.2091 . 271 0.0000 5462 . 'X-RAY DIFFRACTION' 1.0500 1.0600 30 100.0000 5225 . 0.1869 0.1961 . 317 0.0000 5542 . 'X-RAY DIFFRACTION' 1.0600 1.0800 30 100.0000 5222 . 0.1726 0.1904 . 252 0.0000 5474 . 'X-RAY DIFFRACTION' 1.0800 1.0900 30 100.0000 5270 . 0.1594 0.1787 . 270 0.0000 5540 . 'X-RAY DIFFRACTION' 1.0900 1.1100 30 100.0000 5240 . 0.1478 0.1538 . 247 0.0000 5487 . 'X-RAY DIFFRACTION' 1.1100 1.1300 30 100.0000 5241 . 0.1405 0.1692 . 280 0.0000 5521 . 'X-RAY DIFFRACTION' 1.1300 1.1400 30 100.0000 5258 . 0.1326 0.1468 . 243 0.0000 5501 . 'X-RAY DIFFRACTION' 1.1400 1.1600 30 100.0000 5301 . 0.1243 0.1477 . 252 0.0000 5553 . 'X-RAY DIFFRACTION' 1.1600 1.1900 30 100.0000 5246 . 0.1243 0.1442 . 276 0.0000 5522 . 'X-RAY DIFFRACTION' 1.1900 1.2100 30 100.0000 5199 . 0.1185 0.1453 . 284 0.0000 5483 . 'X-RAY DIFFRACTION' 1.2100 1.2300 30 100.0000 5304 . 0.1154 0.1330 . 240 0.0000 5544 . 'X-RAY DIFFRACTION' 1.2300 1.2600 30 100.0000 5191 . 0.1182 0.1314 . 262 0.0000 5453 . 'X-RAY DIFFRACTION' 1.2600 1.2900 30 100.0000 5307 . 0.1197 0.1386 . 272 0.0000 5579 . 'X-RAY DIFFRACTION' 1.2900 1.3200 30 100.0000 5247 . 0.1209 0.1414 . 283 0.0000 5530 . 'X-RAY DIFFRACTION' 1.3200 1.3600 30 100.0000 5208 . 0.1237 0.1358 . 280 0.0000 5488 . 'X-RAY DIFFRACTION' 1.3600 1.4000 30 100.0000 5292 . 0.1240 0.1619 . 250 0.0000 5542 . 'X-RAY DIFFRACTION' 1.4000 1.4400 30 100.0000 5257 . 0.1228 0.1452 . 266 0.0000 5523 . 'X-RAY DIFFRACTION' 1.4400 1.4900 30 100.0000 5307 . 0.1202 0.1248 . 255 0.0000 5562 . 'X-RAY DIFFRACTION' 1.4900 1.5500 30 100.0000 5216 . 0.1180 0.1271 . 276 0.0000 5492 . 'X-RAY DIFFRACTION' 1.5500 1.6200 30 100.0000 5298 . 0.1189 0.1354 . 265 0.0000 5563 . 'X-RAY DIFFRACTION' 1.6200 1.7100 30 100.0000 5322 . 0.1240 0.1416 . 264 0.0000 5586 . 'X-RAY DIFFRACTION' 1.7100 1.8200 30 100.0000 5276 . 0.1343 0.1360 . 252 0.0000 5528 . 'X-RAY DIFFRACTION' 1.8200 1.9600 30 100.0000 5281 . 0.1350 0.1278 . 281 0.0000 5562 . 'X-RAY DIFFRACTION' 1.9600 2.1500 30 100.0000 5296 . 0.1372 0.1438 . 285 0.0000 5581 . 'X-RAY DIFFRACTION' 2.1500 2.4700 30 100.0000 5315 . 0.1383 0.1392 . 291 0.0000 5606 . 'X-RAY DIFFRACTION' 2.4700 3.1100 30 100.0000 5333 . 0.1515 0.1669 . 260 0.0000 5593 . 'X-RAY DIFFRACTION' 3.1100 44.3600 30 100.0000 5491 . 0.1520 0.1770 . 270 0.0000 5761 . 'X-RAY DIFFRACTION' # _struct.entry_id 7HDF _struct.title 'PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0003721' _struct.pdbx_CASP_flag ? _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7HDF _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, Hydrolase' _struct_keywords.text 'Macrodomain, ADP-ribose, SARS-CoV-2, fragment-based drug discovery, VIRAL PROTEIN, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV LSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD KLVSSFL ; _struct_ref.pdbx_align_begin 1025 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7HDF A 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 2 1 7HDF B 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7HDF SER A 1 ? UNP P0DTD1 ? ? 'expression tag' 1 1 1 7HDF MET A 2 ? UNP P0DTD1 ? ? 'expression tag' 2 2 2 7HDF SER B 1 ? UNP P0DTD1 ? ? 'expression tag' 1 3 2 7HDF MET B 2 ? UNP P0DTD1 ? ? 'expression tag' 2 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F 2 1 B,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 22 ? LYS A 31 ? ASP A 22 LYS A 31 1 ? 10 HELX_P HELX_P2 AA2 GLY A 47 ? THR A 57 ? GLY A 47 THR A 57 1 ? 11 HELX_P HELX_P3 AA3 ASN A 59 ? GLY A 73 ? ASN A 59 GLY A 73 1 ? 15 HELX_P HELX_P4 AA4 ASN A 99 ? GLY A 103 ? ASN A 99 GLY A 103 5 ? 5 HELX_P HELX_P5 AA5 GLN A 107 ? ASN A 115 ? GLN A 107 ASN A 115 1 ? 9 HELX_P HELX_P6 AA6 PHE A 116 ? HIS A 119 ? PHE A 116 HIS A 119 5 ? 4 HELX_P HELX_P7 AA7 ALA A 129 ? GLY A 133 ? ALA A 129 GLY A 133 5 ? 5 HELX_P HELX_P8 AA8 ASP A 135 ? VAL A 147 ? ASP A 135 VAL A 147 1 ? 13 HELX_P HELX_P9 AA9 ASP A 157 ? SER A 167 ? ASP A 157 SER A 167 1 ? 11 HELX_P HELX_P10 AB1 ASP B 22 ? LYS B 31 ? ASP B 22 LYS B 31 1 ? 10 HELX_P HELX_P11 AB2 GLY B 47 ? THR B 57 ? GLY B 47 THR B 57 1 ? 11 HELX_P HELX_P12 AB3 ASN B 59 ? GLY B 73 ? ASN B 59 GLY B 73 1 ? 15 HELX_P HELX_P13 AB4 ASN B 99 ? GLY B 103 ? ASN B 99 GLY B 103 5 ? 5 HELX_P HELX_P14 AB5 ASP B 105 ? GLN B 107 ? ASP B 105 GLN B 107 5 ? 3 HELX_P HELX_P15 AB6 LEU B 108 ? ASN B 115 ? LEU B 108 ASN B 115 1 ? 8 HELX_P HELX_P16 AB7 PHE B 116 ? HIS B 119 ? PHE B 116 HIS B 119 5 ? 4 HELX_P HELX_P17 AB8 ALA B 129 ? GLY B 133 ? ALA B 129 GLY B 133 5 ? 5 HELX_P HELX_P18 AB9 ASP B 135 ? VAL B 147 ? ASP B 135 VAL B 147 1 ? 13 HELX_P HELX_P19 AC1 ASP B 157 ? LEU B 169 ? ASP B 157 LEU B 169 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 10 ? LYS A 11 ? LEU A 10 LYS A 11 AA1 2 VAL A 16 ? ASN A 20 ? VAL A 16 ASN A 20 AA1 3 ASN A 150 ? VAL A 155 ? ASN A 150 VAL A 155 AA1 4 VAL A 121 ? ALA A 124 ? VAL A 121 ALA A 124 AA2 1 VAL A 34 ? ALA A 38 ? VAL A 34 ALA A 38 AA2 2 HIS A 91 ? VAL A 95 ? HIS A 91 VAL A 95 AA2 3 SER A 80 ? SER A 84 ? SER A 80 SER A 84 AA3 1 LEU B 10 ? LYS B 11 ? LEU B 10 LYS B 11 AA3 2 VAL B 16 ? ASN B 20 ? VAL B 16 ASN B 20 AA3 3 ASN B 150 ? VAL B 155 ? ASN B 150 VAL B 155 AA3 4 VAL B 121 ? ALA B 124 ? VAL B 121 ALA B 124 AA4 1 VAL B 34 ? ALA B 38 ? VAL B 34 ALA B 38 AA4 2 HIS B 91 ? VAL B 95 ? HIS B 91 VAL B 95 AA4 3 SER B 80 ? SER B 84 ? SER B 80 SER B 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 10 ? N LEU A 10 O ILE A 18 ? O ILE A 18 AA1 2 3 N TYR A 17 ? N TYR A 17 O LEU A 153 ? O LEU A 153 AA1 3 4 O TYR A 152 ? O TYR A 152 N LEU A 122 ? N LEU A 122 AA2 1 2 N ASN A 37 ? N ASN A 37 O VAL A 95 ? O VAL A 95 AA2 2 3 O CYS A 92 ? O CYS A 92 N LEU A 83 ? N LEU A 83 AA3 1 2 N LEU B 10 ? N LEU B 10 O ILE B 18 ? O ILE B 18 AA3 2 3 N TYR B 17 ? N TYR B 17 O LEU B 153 ? O LEU B 153 AA3 3 4 O TYR B 152 ? O TYR B 152 N LEU B 122 ? N LEU B 122 AA4 1 2 N ASN B 37 ? N ASN B 37 O VAL B 95 ? O VAL B 95 AA4 2 3 O CYS B 92 ? O CYS B 92 N LEU B 83 ? N LEU B 83 # _pdbx_entry_details.entry_id 7HDF _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 167 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 501 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 66 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HG _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 1 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 B _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 86 ? ? 55.55 -133.54 2 1 SER A 128 ? B 69.27 -3.30 3 1 PHE A 168 ? B -134.22 -68.94 4 1 HIS B 86 ? ? 57.40 -128.07 # _phasing.method MR # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 707 ? 5.94 . 2 1 O ? A HOH 708 ? 6.06 . 3 1 O ? A HOH 709 ? 7.59 . 4 1 O ? B HOH 401 ? 6.36 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A MET 2 ? A MET 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1A77 O1 O N N 1 A1A77 C1 C N N 2 A1A77 C2 C N N 3 A1A77 C3 C N N 4 A1A77 C4 C Y N 5 A1A77 C5 C Y N 6 A1A77 C6 C Y N 7 A1A77 C7 C Y N 8 A1A77 C8 C Y N 9 A1A77 C10 C N R 10 A1A77 C11 C N N 11 A1A77 C12 C N N 12 A1A77 C9 C Y N 13 A1A77 N1 N N N 14 A1A77 N2 N Y N 15 A1A77 N3 N Y N 16 A1A77 N4 N Y N 17 A1A77 N5 N N N 18 A1A77 H15 H N N 19 A1A77 H2 H N N 20 A1A77 H3 H N N 21 A1A77 H4 H N N 22 A1A77 H5 H N N 23 A1A77 H6 H N N 24 A1A77 H7 H N N 25 A1A77 H8 H N N 26 A1A77 H9 H N N 27 A1A77 H10 H N N 28 A1A77 H1 H N N 29 A1A77 H14 H N N 30 A1A77 H13 H N N 31 A1A77 H17 H N N 32 A1A77 H16 H N N 33 A1A77 H11 H N N 34 A1A77 H12 H N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 ARG N N N N 49 ARG CA C N S 50 ARG C C N N 51 ARG O O N N 52 ARG CB C N N 53 ARG CG C N N 54 ARG CD C N N 55 ARG NE N N N 56 ARG CZ C N N 57 ARG NH1 N N N 58 ARG NH2 N N N 59 ARG OXT O N N 60 ARG H H N N 61 ARG H2 H N N 62 ARG HA H N N 63 ARG HB2 H N N 64 ARG HB3 H N N 65 ARG HG2 H N N 66 ARG HG3 H N N 67 ARG HD2 H N N 68 ARG HD3 H N N 69 ARG HE H N N 70 ARG HH11 H N N 71 ARG HH12 H N N 72 ARG HH21 H N N 73 ARG HH22 H N N 74 ARG HXT H N N 75 ASN N N N N 76 ASN CA C N S 77 ASN C C N N 78 ASN O O N N 79 ASN CB C N N 80 ASN CG C N N 81 ASN OD1 O N N 82 ASN ND2 N N N 83 ASN OXT O N N 84 ASN H H N N 85 ASN H2 H N N 86 ASN HA H N N 87 ASN HB2 H N N 88 ASN HB3 H N N 89 ASN HD21 H N N 90 ASN HD22 H N N 91 ASN HXT H N N 92 ASP N N N N 93 ASP CA C N S 94 ASP C C N N 95 ASP O O N N 96 ASP CB C N N 97 ASP CG C N N 98 ASP OD1 O N N 99 ASP OD2 O N N 100 ASP OXT O N N 101 ASP H H N N 102 ASP H2 H N N 103 ASP HA H N N 104 ASP HB2 H N N 105 ASP HB3 H N N 106 ASP HD2 H N N 107 ASP HXT H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 DMS S S N N 123 DMS O O N N 124 DMS C1 C N N 125 DMS C2 C N N 126 DMS H11 H N N 127 DMS H12 H N N 128 DMS H13 H N N 129 DMS H21 H N N 130 DMS H22 H N N 131 DMS H23 H N N 132 GLN N N N N 133 GLN CA C N S 134 GLN C C N N 135 GLN O O N N 136 GLN CB C N N 137 GLN CG C N N 138 GLN CD C N N 139 GLN OE1 O N N 140 GLN NE2 N N N 141 GLN OXT O N N 142 GLN H H N N 143 GLN H2 H N N 144 GLN HA H N N 145 GLN HB2 H N N 146 GLN HB3 H N N 147 GLN HG2 H N N 148 GLN HG3 H N N 149 GLN HE21 H N N 150 GLN HE22 H N N 151 GLN HXT H N N 152 GLU N N N N 153 GLU CA C N S 154 GLU C C N N 155 GLU O O N N 156 GLU CB C N N 157 GLU CG C N N 158 GLU CD C N N 159 GLU OE1 O N N 160 GLU OE2 O N N 161 GLU OXT O N N 162 GLU H H N N 163 GLU H2 H N N 164 GLU HA H N N 165 GLU HB2 H N N 166 GLU HB3 H N N 167 GLU HG2 H N N 168 GLU HG3 H N N 169 GLU HE2 H N N 170 GLU HXT H N N 171 GLY N N N N 172 GLY CA C N N 173 GLY C C N N 174 GLY O O N N 175 GLY OXT O N N 176 GLY H H N N 177 GLY H2 H N N 178 GLY HA2 H N N 179 GLY HA3 H N N 180 GLY HXT H N N 181 HIS N N N N 182 HIS CA C N S 183 HIS C C N N 184 HIS O O N N 185 HIS CB C N N 186 HIS CG C Y N 187 HIS ND1 N Y N 188 HIS CD2 C Y N 189 HIS CE1 C Y N 190 HIS NE2 N Y N 191 HIS OXT O N N 192 HIS H H N N 193 HIS H2 H N N 194 HIS HA H N N 195 HIS HB2 H N N 196 HIS HB3 H N N 197 HIS HD1 H N N 198 HIS HD2 H N N 199 HIS HE1 H N N 200 HIS HE2 H N N 201 HIS HXT H N N 202 HOH O O N N 203 HOH H1 H N N 204 HOH H2 H N N 205 ILE N N N N 206 ILE CA C N S 207 ILE C C N N 208 ILE O O N N 209 ILE CB C N S 210 ILE CG1 C N N 211 ILE CG2 C N N 212 ILE CD1 C N N 213 ILE OXT O N N 214 ILE H H N N 215 ILE H2 H N N 216 ILE HA H N N 217 ILE HB H N N 218 ILE HG12 H N N 219 ILE HG13 H N N 220 ILE HG21 H N N 221 ILE HG22 H N N 222 ILE HG23 H N N 223 ILE HD11 H N N 224 ILE HD12 H N N 225 ILE HD13 H N N 226 ILE HXT H N N 227 LEU N N N N 228 LEU CA C N S 229 LEU C C N N 230 LEU O O N N 231 LEU CB C N N 232 LEU CG C N N 233 LEU CD1 C N N 234 LEU CD2 C N N 235 LEU OXT O N N 236 LEU H H N N 237 LEU H2 H N N 238 LEU HA H N N 239 LEU HB2 H N N 240 LEU HB3 H N N 241 LEU HG H N N 242 LEU HD11 H N N 243 LEU HD12 H N N 244 LEU HD13 H N N 245 LEU HD21 H N N 246 LEU HD22 H N N 247 LEU HD23 H N N 248 LEU HXT H N N 249 LYS N N N N 250 LYS CA C N S 251 LYS C C N N 252 LYS O O N N 253 LYS CB C N N 254 LYS CG C N N 255 LYS CD C N N 256 LYS CE C N N 257 LYS NZ N N N 258 LYS OXT O N N 259 LYS H H N N 260 LYS H2 H N N 261 LYS HA H N N 262 LYS HB2 H N N 263 LYS HB3 H N N 264 LYS HG2 H N N 265 LYS HG3 H N N 266 LYS HD2 H N N 267 LYS HD3 H N N 268 LYS HE2 H N N 269 LYS HE3 H N N 270 LYS HZ1 H N N 271 LYS HZ2 H N N 272 LYS HZ3 H N N 273 LYS HXT H N N 274 MET N N N N 275 MET CA C N S 276 MET C C N N 277 MET O O N N 278 MET CB C N N 279 MET CG C N N 280 MET SD S N N 281 MET CE C N N 282 MET OXT O N N 283 MET H H N N 284 MET H2 H N N 285 MET HA H N N 286 MET HB2 H N N 287 MET HB3 H N N 288 MET HG2 H N N 289 MET HG3 H N N 290 MET HE1 H N N 291 MET HE2 H N N 292 MET HE3 H N N 293 MET HXT H N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TYR N N N N 366 TYR CA C N S 367 TYR C C N N 368 TYR O O N N 369 TYR CB C N N 370 TYR CG C Y N 371 TYR CD1 C Y N 372 TYR CD2 C Y N 373 TYR CE1 C Y N 374 TYR CE2 C Y N 375 TYR CZ C Y N 376 TYR OH O N N 377 TYR OXT O N N 378 TYR H H N N 379 TYR H2 H N N 380 TYR HA H N N 381 TYR HB2 H N N 382 TYR HB3 H N N 383 TYR HD1 H N N 384 TYR HD2 H N N 385 TYR HE1 H N N 386 TYR HE2 H N N 387 TYR HH H N N 388 TYR HXT H N N 389 VAL N N N N 390 VAL CA C N S 391 VAL C C N N 392 VAL O O N N 393 VAL CB C N N 394 VAL CG1 C N N 395 VAL CG2 C N N 396 VAL OXT O N N 397 VAL H H N N 398 VAL H2 H N N 399 VAL HA H N N 400 VAL HB H N N 401 VAL HG11 H N N 402 VAL HG12 H N N 403 VAL HG13 H N N 404 VAL HG21 H N N 405 VAL HG22 H N N 406 VAL HG23 H N N 407 VAL HXT H N N 408 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A77 C1 N5 sing N N 1 A1A77 C2 N5 sing N N 2 A1A77 C2 C3 sing N N 3 A1A77 N5 C12 sing N N 4 A1A77 C12 C10 sing N N 5 A1A77 C3 N1 sing N N 6 A1A77 C11 C10 sing N N 7 A1A77 C11 O1 sing N N 8 A1A77 C10 N1 sing N N 9 A1A77 N1 C4 sing N N 10 A1A77 C8 C7 sing Y N 11 A1A77 C8 C9 doub Y N 12 A1A77 C4 C7 doub Y N 13 A1A77 C4 N2 sing Y N 14 A1A77 C7 C6 sing Y N 15 A1A77 C9 N4 sing Y N 16 A1A77 N2 C5 doub Y N 17 A1A77 C6 N4 sing Y N 18 A1A77 C6 N3 doub Y N 19 A1A77 C5 N3 sing Y N 20 A1A77 O1 H15 sing N N 21 A1A77 C1 H2 sing N N 22 A1A77 C1 H3 sing N N 23 A1A77 C1 H4 sing N N 24 A1A77 C2 H5 sing N N 25 A1A77 C2 H6 sing N N 26 A1A77 C3 H7 sing N N 27 A1A77 C3 H8 sing N N 28 A1A77 C5 H9 sing N N 29 A1A77 C8 H10 sing N N 30 A1A77 C10 H1 sing N N 31 A1A77 C11 H14 sing N N 32 A1A77 C11 H13 sing N N 33 A1A77 C12 H17 sing N N 34 A1A77 C12 H16 sing N N 35 A1A77 C9 H11 sing N N 36 A1A77 N4 H12 sing N N 37 ALA N CA sing N N 38 ALA N H sing N N 39 ALA N H2 sing N N 40 ALA CA C sing N N 41 ALA CA CB sing N N 42 ALA CA HA sing N N 43 ALA C O doub N N 44 ALA C OXT sing N N 45 ALA CB HB1 sing N N 46 ALA CB HB2 sing N N 47 ALA CB HB3 sing N N 48 ALA OXT HXT sing N N 49 ARG N CA sing N N 50 ARG N H sing N N 51 ARG N H2 sing N N 52 ARG CA C sing N N 53 ARG CA CB sing N N 54 ARG CA HA sing N N 55 ARG C O doub N N 56 ARG C OXT sing N N 57 ARG CB CG sing N N 58 ARG CB HB2 sing N N 59 ARG CB HB3 sing N N 60 ARG CG CD sing N N 61 ARG CG HG2 sing N N 62 ARG CG HG3 sing N N 63 ARG CD NE sing N N 64 ARG CD HD2 sing N N 65 ARG CD HD3 sing N N 66 ARG NE CZ sing N N 67 ARG NE HE sing N N 68 ARG CZ NH1 sing N N 69 ARG CZ NH2 doub N N 70 ARG NH1 HH11 sing N N 71 ARG NH1 HH12 sing N N 72 ARG NH2 HH21 sing N N 73 ARG NH2 HH22 sing N N 74 ARG OXT HXT sing N N 75 ASN N CA sing N N 76 ASN N H sing N N 77 ASN N H2 sing N N 78 ASN CA C sing N N 79 ASN CA CB sing N N 80 ASN CA HA sing N N 81 ASN C O doub N N 82 ASN C OXT sing N N 83 ASN CB CG sing N N 84 ASN CB HB2 sing N N 85 ASN CB HB3 sing N N 86 ASN CG OD1 doub N N 87 ASN CG ND2 sing N N 88 ASN ND2 HD21 sing N N 89 ASN ND2 HD22 sing N N 90 ASN OXT HXT sing N N 91 ASP N CA sing N N 92 ASP N H sing N N 93 ASP N H2 sing N N 94 ASP CA C sing N N 95 ASP CA CB sing N N 96 ASP CA HA sing N N 97 ASP C O doub N N 98 ASP C OXT sing N N 99 ASP CB CG sing N N 100 ASP CB HB2 sing N N 101 ASP CB HB3 sing N N 102 ASP CG OD1 doub N N 103 ASP CG OD2 sing N N 104 ASP OD2 HD2 sing N N 105 ASP OXT HXT sing N N 106 CYS N CA sing N N 107 CYS N H sing N N 108 CYS N H2 sing N N 109 CYS CA C sing N N 110 CYS CA CB sing N N 111 CYS CA HA sing N N 112 CYS C O doub N N 113 CYS C OXT sing N N 114 CYS CB SG sing N N 115 CYS CB HB2 sing N N 116 CYS CB HB3 sing N N 117 CYS SG HG sing N N 118 CYS OXT HXT sing N N 119 DMS S O doub N N 120 DMS S C1 sing N N 121 DMS S C2 sing N N 122 DMS C1 H11 sing N N 123 DMS C1 H12 sing N N 124 DMS C1 H13 sing N N 125 DMS C2 H21 sing N N 126 DMS C2 H22 sing N N 127 DMS C2 H23 sing N N 128 GLN N CA sing N N 129 GLN N H sing N N 130 GLN N H2 sing N N 131 GLN CA C sing N N 132 GLN CA CB sing N N 133 GLN CA HA sing N N 134 GLN C O doub N N 135 GLN C OXT sing N N 136 GLN CB CG sing N N 137 GLN CB HB2 sing N N 138 GLN CB HB3 sing N N 139 GLN CG CD sing N N 140 GLN CG HG2 sing N N 141 GLN CG HG3 sing N N 142 GLN CD OE1 doub N N 143 GLN CD NE2 sing N N 144 GLN NE2 HE21 sing N N 145 GLN NE2 HE22 sing N N 146 GLN OXT HXT sing N N 147 GLU N CA sing N N 148 GLU N H sing N N 149 GLU N H2 sing N N 150 GLU CA C sing N N 151 GLU CA CB sing N N 152 GLU CA HA sing N N 153 GLU C O doub N N 154 GLU C OXT sing N N 155 GLU CB CG sing N N 156 GLU CB HB2 sing N N 157 GLU CB HB3 sing N N 158 GLU CG CD sing N N 159 GLU CG HG2 sing N N 160 GLU CG HG3 sing N N 161 GLU CD OE1 doub N N 162 GLU CD OE2 sing N N 163 GLU OE2 HE2 sing N N 164 GLU OXT HXT sing N N 165 GLY N CA sing N N 166 GLY N H sing N N 167 GLY N H2 sing N N 168 GLY CA C sing N N 169 GLY CA HA2 sing N N 170 GLY CA HA3 sing N N 171 GLY C O doub N N 172 GLY C OXT sing N N 173 GLY OXT HXT sing N N 174 HIS N CA sing N N 175 HIS N H sing N N 176 HIS N H2 sing N N 177 HIS CA C sing N N 178 HIS CA CB sing N N 179 HIS CA HA sing N N 180 HIS C O doub N N 181 HIS C OXT sing N N 182 HIS CB CG sing N N 183 HIS CB HB2 sing N N 184 HIS CB HB3 sing N N 185 HIS CG ND1 sing Y N 186 HIS CG CD2 doub Y N 187 HIS ND1 CE1 doub Y N 188 HIS ND1 HD1 sing N N 189 HIS CD2 NE2 sing Y N 190 HIS CD2 HD2 sing N N 191 HIS CE1 NE2 sing Y N 192 HIS CE1 HE1 sing N N 193 HIS NE2 HE2 sing N N 194 HIS OXT HXT sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 ILE N CA sing N N 198 ILE N H sing N N 199 ILE N H2 sing N N 200 ILE CA C sing N N 201 ILE CA CB sing N N 202 ILE CA HA sing N N 203 ILE C O doub N N 204 ILE C OXT sing N N 205 ILE CB CG1 sing N N 206 ILE CB CG2 sing N N 207 ILE CB HB sing N N 208 ILE CG1 CD1 sing N N 209 ILE CG1 HG12 sing N N 210 ILE CG1 HG13 sing N N 211 ILE CG2 HG21 sing N N 212 ILE CG2 HG22 sing N N 213 ILE CG2 HG23 sing N N 214 ILE CD1 HD11 sing N N 215 ILE CD1 HD12 sing N N 216 ILE CD1 HD13 sing N N 217 ILE OXT HXT sing N N 218 LEU N CA sing N N 219 LEU N H sing N N 220 LEU N H2 sing N N 221 LEU CA C sing N N 222 LEU CA CB sing N N 223 LEU CA HA sing N N 224 LEU C O doub N N 225 LEU C OXT sing N N 226 LEU CB CG sing N N 227 LEU CB HB2 sing N N 228 LEU CB HB3 sing N N 229 LEU CG CD1 sing N N 230 LEU CG CD2 sing N N 231 LEU CG HG sing N N 232 LEU CD1 HD11 sing N N 233 LEU CD1 HD12 sing N N 234 LEU CD1 HD13 sing N N 235 LEU CD2 HD21 sing N N 236 LEU CD2 HD22 sing N N 237 LEU CD2 HD23 sing N N 238 LEU OXT HXT sing N N 239 LYS N CA sing N N 240 LYS N H sing N N 241 LYS N H2 sing N N 242 LYS CA C sing N N 243 LYS CA CB sing N N 244 LYS CA HA sing N N 245 LYS C O doub N N 246 LYS C OXT sing N N 247 LYS CB CG sing N N 248 LYS CB HB2 sing N N 249 LYS CB HB3 sing N N 250 LYS CG CD sing N N 251 LYS CG HG2 sing N N 252 LYS CG HG3 sing N N 253 LYS CD CE sing N N 254 LYS CD HD2 sing N N 255 LYS CD HD3 sing N N 256 LYS CE NZ sing N N 257 LYS CE HE2 sing N N 258 LYS CE HE3 sing N N 259 LYS NZ HZ1 sing N N 260 LYS NZ HZ2 sing N N 261 LYS NZ HZ3 sing N N 262 LYS OXT HXT sing N N 263 MET N CA sing N N 264 MET N H sing N N 265 MET N H2 sing N N 266 MET CA C sing N N 267 MET CA CB sing N N 268 MET CA HA sing N N 269 MET C O doub N N 270 MET C OXT sing N N 271 MET CB CG sing N N 272 MET CB HB2 sing N N 273 MET CB HB3 sing N N 274 MET CG SD sing N N 275 MET CG HG2 sing N N 276 MET CG HG3 sing N N 277 MET SD CE sing N N 278 MET CE HE1 sing N N 279 MET CE HE2 sing N N 280 MET CE HE3 sing N N 281 MET OXT HXT sing N N 282 PHE N CA sing N N 283 PHE N H sing N N 284 PHE N H2 sing N N 285 PHE CA C sing N N 286 PHE CA CB sing N N 287 PHE CA HA sing N N 288 PHE C O doub N N 289 PHE C OXT sing N N 290 PHE CB CG sing N N 291 PHE CB HB2 sing N N 292 PHE CB HB3 sing N N 293 PHE CG CD1 doub Y N 294 PHE CG CD2 sing Y N 295 PHE CD1 CE1 sing Y N 296 PHE CD1 HD1 sing N N 297 PHE CD2 CE2 doub Y N 298 PHE CD2 HD2 sing N N 299 PHE CE1 CZ doub Y N 300 PHE CE1 HE1 sing N N 301 PHE CE2 CZ sing Y N 302 PHE CE2 HE2 sing N N 303 PHE CZ HZ sing N N 304 PHE OXT HXT sing N N 305 PRO N CA sing N N 306 PRO N CD sing N N 307 PRO N H sing N N 308 PRO CA C sing N N 309 PRO CA CB sing N N 310 PRO CA HA sing N N 311 PRO C O doub N N 312 PRO C OXT sing N N 313 PRO CB CG sing N N 314 PRO CB HB2 sing N N 315 PRO CB HB3 sing N N 316 PRO CG CD sing N N 317 PRO CG HG2 sing N N 318 PRO CG HG3 sing N N 319 PRO CD HD2 sing N N 320 PRO CD HD3 sing N N 321 PRO OXT HXT sing N N 322 SER N CA sing N N 323 SER N H sing N N 324 SER N H2 sing N N 325 SER CA C sing N N 326 SER CA CB sing N N 327 SER CA HA sing N N 328 SER C O doub N N 329 SER C OXT sing N N 330 SER CB OG sing N N 331 SER CB HB2 sing N N 332 SER CB HB3 sing N N 333 SER OG HG sing N N 334 SER OXT HXT sing N N 335 THR N CA sing N N 336 THR N H sing N N 337 THR N H2 sing N N 338 THR CA C sing N N 339 THR CA CB sing N N 340 THR CA HA sing N N 341 THR C O doub N N 342 THR C OXT sing N N 343 THR CB OG1 sing N N 344 THR CB CG2 sing N N 345 THR CB HB sing N N 346 THR OG1 HG1 sing N N 347 THR CG2 HG21 sing N N 348 THR CG2 HG22 sing N N 349 THR CG2 HG23 sing N N 350 THR OXT HXT sing N N 351 TYR N CA sing N N 352 TYR N H sing N N 353 TYR N H2 sing N N 354 TYR CA C sing N N 355 TYR CA CB sing N N 356 TYR CA HA sing N N 357 TYR C O doub N N 358 TYR C OXT sing N N 359 TYR CB CG sing N N 360 TYR CB HB2 sing N N 361 TYR CB HB3 sing N N 362 TYR CG CD1 doub Y N 363 TYR CG CD2 sing Y N 364 TYR CD1 CE1 sing Y N 365 TYR CD1 HD1 sing N N 366 TYR CD2 CE2 doub Y N 367 TYR CD2 HD2 sing N N 368 TYR CE1 CZ doub Y N 369 TYR CE1 HE1 sing N N 370 TYR CE2 CZ sing Y N 371 TYR CE2 HE2 sing N N 372 TYR CZ OH sing N N 373 TYR OH HH sing N N 374 TYR OXT HXT sing N N 375 VAL N CA sing N N 376 VAL N H sing N N 377 VAL N H2 sing N N 378 VAL CA C sing N N 379 VAL CA CB sing N N 380 VAL CA HA sing N N 381 VAL C O doub N N 382 VAL C OXT sing N N 383 VAL CB CG1 sing N N 384 VAL CB CG2 sing N N 385 VAL CB HB sing N N 386 VAL CG1 HG11 sing N N 387 VAL CG1 HG12 sing N N 388 VAL CG1 HG13 sing N N 389 VAL CG2 HG21 sing N N 390 VAL CG2 HG22 sing N N 391 VAL CG2 HG23 sing N N 392 VAL OXT HXT sing N N 393 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171110 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 NSP3 macrodomain ligand screen - FrankenROCS hits and analogues of AVI-313' _pdbx_deposit_group.group_description 'SARS-CoV-2 NSP3 macrodomain in complex with ligands identified by X-ray diffraction using ALS 8.3.1, SSRL 9-2, and SSRL 12-2' _pdbx_deposit_group.group_type 'changed state' _pdbx_deposit_group.group_id G_1002304 # _atom_sites.entry_id 7HDF _atom_sites.fract_transf_matrix[1][1] 0.011271 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011271 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025267 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O S # loop_ # loop_ #