data_7HDP # _entry.id 7HDP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7HDP pdb_00007hdp 10.2210/pdb7hdp/pdb WWPDB D_1001407343 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-06-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7HDP _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2024-08-15 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible N _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.name_last Fraser _pdbx_contact_author.name_first James _pdbx_contact_author.name_mi S. _pdbx_contact_author.email jaimefraser@gmail.com _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5080-2859 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Correy, G.J.' 1 ? 'Fraser, J.S.' 2 ? # _citation.id primary _citation.title ;Exploration of structure-activity relationships for the SARS-CoV-2 macrodomain from shape-based fragment linking and active learning. ; _citation.journal_abbrev 'Sci Adv' _citation.journal_volume 11 _citation.page_first eads7187 _citation.page_last eads7187 _citation.year 2025 _citation.pdbx_database_id_PubMed 40435250 _citation.pdbx_database_id_DOI 10.1126/sciadv.ads7187 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2375-2548 _citation.journal_id_CSD ? _citation.book_publisher ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Correy, G.J.' 0000-0001-5155-7325 1 primary 'Rachman, M.M.' 0000-0003-3671-8885 2 primary 'Togo, T.' 0000-0003-0243-0760 3 primary 'Gahbauer, S.' 0000-0002-3115-9757 4 primary 'Doruk, Y.U.' 0000-0002-3388-7803 5 primary 'Stevens, M.G.V.' 0009-0004-9732-0349 6 primary 'Jaishankar, P.' 0009-0005-2013-8941 7 primary 'Kelley, B.' ? 8 primary 'Goldman, B.' 0009-0006-6465-6959 9 primary 'Schmidt, M.' ? 10 primary 'Kramer, T.' 0009-0002-5932-7406 11 primary 'Radchenko, D.S.' 0000-0001-5444-7754 12 primary 'Moroz, Y.S.' 0000-0001-6073-002X 13 primary 'Ashworth, A.' 0000-0003-1446-7878 14 primary 'Riley, P.' 0000-0003-0797-0272 15 primary 'Shoichet, B.K.' 0000-0002-6098-7367 16 primary 'Renslo, A.R.' 0000-0002-1240-2846 17 primary 'Walters, W.P.' 0000-0003-2860-7958 18 primary 'Fraser, J.S.' 0000-0002-5080-2859 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Non-structural protein 3' 18178.766 2 '3.4.19.121, 3.4.22.-' ? ? 'HIS6 purification tag and linker (MHHHHHHSSGVDLGTENLYFQ) cleaved with TEV protease' 2 non-polymer syn 'trifluoroacetic acid' 114.023 1 ? ? ? ? 3 non-polymer syn '(2S)-2-cyclobutyl-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]ethan-1-ol' 232.282 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 423 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'nsp3, PL2-PRO, Papain-like protease, Papain-like proteinase, PL-PRO' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_seq_one_letter_code_can ;SMVNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGS CVLSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNL YDKLVSSFL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'trifluoroacetic acid' TFA 3 '(2S)-2-cyclobutyl-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]ethan-1-ol' A1A8W 4 'CHLORIDE ION' CL 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 VAL n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 SER n 1 8 GLY n 1 9 TYR n 1 10 LEU n 1 11 LYS n 1 12 LEU n 1 13 THR n 1 14 ASP n 1 15 ASN n 1 16 VAL n 1 17 TYR n 1 18 ILE n 1 19 LYS n 1 20 ASN n 1 21 ALA n 1 22 ASP n 1 23 ILE n 1 24 VAL n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LYS n 1 29 LYS n 1 30 VAL n 1 31 LYS n 1 32 PRO n 1 33 THR n 1 34 VAL n 1 35 VAL n 1 36 VAL n 1 37 ASN n 1 38 ALA n 1 39 ALA n 1 40 ASN n 1 41 VAL n 1 42 TYR n 1 43 LEU n 1 44 LYS n 1 45 HIS n 1 46 GLY n 1 47 GLY n 1 48 GLY n 1 49 VAL n 1 50 ALA n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ASN n 1 55 LYS n 1 56 ALA n 1 57 THR n 1 58 ASN n 1 59 ASN n 1 60 ALA n 1 61 MET n 1 62 GLN n 1 63 VAL n 1 64 GLU n 1 65 SER n 1 66 ASP n 1 67 ASP n 1 68 TYR n 1 69 ILE n 1 70 ALA n 1 71 THR n 1 72 ASN n 1 73 GLY n 1 74 PRO n 1 75 LEU n 1 76 LYS n 1 77 VAL n 1 78 GLY n 1 79 GLY n 1 80 SER n 1 81 CYS n 1 82 VAL n 1 83 LEU n 1 84 SER n 1 85 GLY n 1 86 HIS n 1 87 ASN n 1 88 LEU n 1 89 ALA n 1 90 LYS n 1 91 HIS n 1 92 CYS n 1 93 LEU n 1 94 HIS n 1 95 VAL n 1 96 VAL n 1 97 GLY n 1 98 PRO n 1 99 ASN n 1 100 VAL n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 GLU n 1 105 ASP n 1 106 ILE n 1 107 GLN n 1 108 LEU n 1 109 LEU n 1 110 LYS n 1 111 SER n 1 112 ALA n 1 113 TYR n 1 114 GLU n 1 115 ASN n 1 116 PHE n 1 117 ASN n 1 118 GLN n 1 119 HIS n 1 120 GLU n 1 121 VAL n 1 122 LEU n 1 123 LEU n 1 124 ALA n 1 125 PRO n 1 126 LEU n 1 127 LEU n 1 128 SER n 1 129 ALA n 1 130 GLY n 1 131 ILE n 1 132 PHE n 1 133 GLY n 1 134 ALA n 1 135 ASP n 1 136 PRO n 1 137 ILE n 1 138 HIS n 1 139 SER n 1 140 LEU n 1 141 ARG n 1 142 VAL n 1 143 CYS n 1 144 VAL n 1 145 ASP n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 THR n 1 150 ASN n 1 151 VAL n 1 152 TYR n 1 153 LEU n 1 154 ALA n 1 155 VAL n 1 156 PHE n 1 157 ASP n 1 158 LYS n 1 159 ASN n 1 160 LEU n 1 161 TYR n 1 162 ASP n 1 163 LYS n 1 164 LEU n 1 165 VAL n 1 166 SER n 1 167 SER n 1 168 PHE n 1 169 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 169 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rep, 1a-1b' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Severe acute respiratory syndrome coronavirus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2697049 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1A8W non-polymer . '(2S)-2-cyclobutyl-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]ethan-1-ol' ? 'C12 H16 N4 O' 232.282 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TFA non-polymer . 'trifluoroacetic acid' ? 'C2 H F3 O2' 114.023 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 MET 2 2 ? ? ? A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 HIS 91 91 91 HIS HIS A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLN 107 107 107 GLN GLN A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 PHE 116 116 116 PHE PHE A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 CYS 143 143 143 CYS CYS A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 THR 146 146 146 THR THR A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 ASN 159 159 159 ASN ASN A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n B 1 1 SER 1 1 1 SER SER B . n B 1 2 MET 2 2 2 MET MET B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 PHE 6 6 6 PHE PHE B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 ASN 15 15 15 ASN ASN B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 TYR 17 17 17 TYR TYR B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 ASP 22 22 22 ASP ASP B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 GLU 26 26 26 GLU GLU B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 LYS 31 31 31 LYS LYS B . n B 1 32 PRO 32 32 32 PRO PRO B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 ASN 40 40 40 ASN ASN B . n B 1 41 VAL 41 41 41 VAL VAL B . n B 1 42 TYR 42 42 42 TYR TYR B . n B 1 43 LEU 43 43 43 LEU LEU B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 HIS 45 45 45 HIS HIS B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 VAL 49 49 49 VAL VAL B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 ALA 56 56 56 ALA ALA B . n B 1 57 THR 57 57 57 THR THR B . n B 1 58 ASN 58 58 58 ASN ASN B . n B 1 59 ASN 59 59 59 ASN ASN B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 MET 61 61 61 MET MET B . n B 1 62 GLN 62 62 62 GLN GLN B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 GLU 64 64 64 GLU GLU B . n B 1 65 SER 65 65 65 SER SER B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 TYR 68 68 68 TYR TYR B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 ASN 72 72 72 ASN ASN B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 PRO 74 74 74 PRO PRO B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 SER 80 80 80 SER SER B . n B 1 81 CYS 81 81 81 CYS CYS B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 ASN 87 87 87 ASN ASN B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 HIS 91 91 91 HIS HIS B . n B 1 92 CYS 92 92 92 CYS CYS B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 HIS 94 94 94 HIS HIS B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 GLY 97 97 97 GLY GLY B . n B 1 98 PRO 98 98 98 PRO PRO B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 VAL 100 100 100 VAL VAL B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLN 107 107 107 GLN GLN B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 LYS 110 110 110 LYS LYS B . n B 1 111 SER 111 111 111 SER SER B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 TYR 113 113 113 TYR TYR B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 ASN 115 115 115 ASN ASN B . n B 1 116 PHE 116 116 116 PHE PHE B . n B 1 117 ASN 117 117 117 ASN ASN B . n B 1 118 GLN 118 118 118 GLN GLN B . n B 1 119 HIS 119 119 119 HIS HIS B . n B 1 120 GLU 120 120 120 GLU GLU B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 LEU 122 122 122 LEU LEU B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 ALA 124 124 124 ALA ALA B . n B 1 125 PRO 125 125 125 PRO PRO B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 LEU 127 127 127 LEU LEU B . n B 1 128 SER 128 128 128 SER SER B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 ILE 131 131 131 ILE ILE B . n B 1 132 PHE 132 132 132 PHE PHE B . n B 1 133 GLY 133 133 133 GLY GLY B . n B 1 134 ALA 134 134 134 ALA ALA B . n B 1 135 ASP 135 135 135 ASP ASP B . n B 1 136 PRO 136 136 136 PRO PRO B . n B 1 137 ILE 137 137 137 ILE ILE B . n B 1 138 HIS 138 138 138 HIS HIS B . n B 1 139 SER 139 139 139 SER SER B . n B 1 140 LEU 140 140 140 LEU LEU B . n B 1 141 ARG 141 141 141 ARG ARG B . n B 1 142 VAL 142 142 142 VAL VAL B . n B 1 143 CYS 143 143 143 CYS CYS B . n B 1 144 VAL 144 144 144 VAL VAL B . n B 1 145 ASP 145 145 145 ASP ASP B . n B 1 146 THR 146 146 146 THR THR B . n B 1 147 VAL 147 147 147 VAL VAL B . n B 1 148 ARG 148 148 148 ARG ARG B . n B 1 149 THR 149 149 149 THR THR B . n B 1 150 ASN 150 150 150 ASN ASN B . n B 1 151 VAL 151 151 151 VAL VAL B . n B 1 152 TYR 152 152 152 TYR TYR B . n B 1 153 LEU 153 153 153 LEU LEU B . n B 1 154 ALA 154 154 154 ALA ALA B . n B 1 155 VAL 155 155 155 VAL VAL B . n B 1 156 PHE 156 156 156 PHE PHE B . n B 1 157 ASP 157 157 157 ASP ASP B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 ASN 159 159 159 ASN ASN B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 TYR 161 161 161 TYR TYR B . n B 1 162 ASP 162 162 162 ASP ASP B . n B 1 163 LYS 163 163 163 LYS LYS B . n B 1 164 LEU 164 164 164 LEU LEU B . n B 1 165 VAL 165 165 165 VAL VAL B . n B 1 166 SER 166 166 166 SER SER B . n B 1 167 SER 167 167 167 SER SER B . n B 1 168 PHE 168 168 168 PHE PHE B . n B 1 169 LEU 169 169 169 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TFA 1 201 201 TFA TFA A . D 3 A1A8W 1 202 201 A1A8W LA1 A . E 4 CL 1 203 1 CL CL A . F 5 HOH 1 301 105 HOH HOH A . F 5 HOH 2 302 292 HOH HOH A . F 5 HOH 3 303 15 HOH HOH A . F 5 HOH 4 304 1289 HOH HOH A . F 5 HOH 5 305 405 HOH HOH A . F 5 HOH 6 306 625 HOH HOH A . F 5 HOH 7 307 196 HOH HOH A . F 5 HOH 8 308 493 HOH HOH A . F 5 HOH 9 309 247 HOH HOH A . F 5 HOH 10 310 153 HOH HOH A . F 5 HOH 11 311 229 HOH HOH A . F 5 HOH 12 312 109 HOH HOH A . F 5 HOH 13 313 209 HOH HOH A . F 5 HOH 14 314 6 HOH HOH A . F 5 HOH 15 315 278 HOH HOH A . F 5 HOH 16 316 281 HOH HOH A . F 5 HOH 17 317 661 HOH HOH A . F 5 HOH 18 318 7 HOH HOH A . F 5 HOH 19 319 136 HOH HOH A . F 5 HOH 20 320 1301 HOH HOH A . F 5 HOH 21 321 124 HOH HOH A . F 5 HOH 22 322 76 HOH HOH A . F 5 HOH 23 323 1275 HOH HOH A . F 5 HOH 24 324 192 HOH HOH A . F 5 HOH 25 325 10 HOH HOH A . F 5 HOH 26 326 1295 HOH HOH A . F 5 HOH 27 327 337 HOH HOH A . F 5 HOH 28 328 15 HOH HOH A . F 5 HOH 29 329 225 HOH HOH A . F 5 HOH 30 330 236 HOH HOH A . F 5 HOH 31 331 18 HOH HOH A . F 5 HOH 32 332 8 HOH HOH A . F 5 HOH 33 333 140 HOH HOH A . F 5 HOH 34 334 164 HOH HOH A . F 5 HOH 35 335 21 HOH HOH A . F 5 HOH 36 336 630 HOH HOH A . F 5 HOH 37 337 86 HOH HOH A . F 5 HOH 38 338 469 HOH HOH A . F 5 HOH 39 339 151 HOH HOH A . F 5 HOH 40 340 17 HOH HOH A . F 5 HOH 41 341 1283 HOH HOH A . F 5 HOH 42 342 320 HOH HOH A . F 5 HOH 43 343 662 HOH HOH A . F 5 HOH 44 344 165 HOH HOH A . F 5 HOH 45 345 1300 HOH HOH A . F 5 HOH 46 346 296 HOH HOH A . F 5 HOH 47 347 393 HOH HOH A . F 5 HOH 48 348 964 HOH HOH A . F 5 HOH 49 349 241 HOH HOH A . F 5 HOH 50 350 155 HOH HOH A . F 5 HOH 51 351 33 HOH HOH A . F 5 HOH 52 352 93 HOH HOH A . F 5 HOH 53 353 396 HOH HOH A . F 5 HOH 54 354 42 HOH HOH A . F 5 HOH 55 355 57 HOH HOH A . F 5 HOH 56 356 39 HOH HOH A . F 5 HOH 57 357 92 HOH HOH A . F 5 HOH 58 358 354 HOH HOH A . F 5 HOH 59 359 139 HOH HOH A . F 5 HOH 60 360 66 HOH HOH A . F 5 HOH 61 361 409 HOH HOH A . F 5 HOH 62 362 169 HOH HOH A . F 5 HOH 63 363 5 HOH HOH A . F 5 HOH 64 364 2 HOH HOH A . F 5 HOH 65 365 36 HOH HOH A . F 5 HOH 66 366 102 HOH HOH A . F 5 HOH 67 367 45 HOH HOH A . F 5 HOH 68 368 19 HOH HOH A . F 5 HOH 69 369 26 HOH HOH A . F 5 HOH 70 370 159 HOH HOH A . F 5 HOH 71 371 81 HOH HOH A . F 5 HOH 72 372 162 HOH HOH A . F 5 HOH 73 373 138 HOH HOH A . F 5 HOH 74 374 46 HOH HOH A . F 5 HOH 75 375 1290 HOH HOH A . F 5 HOH 76 376 1310 HOH HOH A . F 5 HOH 77 377 115 HOH HOH A . F 5 HOH 78 378 4 HOH HOH A . F 5 HOH 79 379 218 HOH HOH A . F 5 HOH 80 380 186 HOH HOH A . F 5 HOH 81 381 56 HOH HOH A . F 5 HOH 82 382 1308 HOH HOH A . F 5 HOH 83 383 35 HOH HOH A . F 5 HOH 84 384 49 HOH HOH A . F 5 HOH 85 385 939 HOH HOH A . F 5 HOH 86 386 27 HOH HOH A . F 5 HOH 87 387 366 HOH HOH A . F 5 HOH 88 388 140 HOH HOH A . F 5 HOH 89 389 70 HOH HOH A . F 5 HOH 90 390 134 HOH HOH A . F 5 HOH 91 391 154 HOH HOH A . F 5 HOH 92 392 6 HOH HOH A . F 5 HOH 93 393 85 HOH HOH A . F 5 HOH 94 394 58 HOH HOH A . F 5 HOH 95 395 34 HOH HOH A . F 5 HOH 96 396 116 HOH HOH A . F 5 HOH 97 397 461 HOH HOH A . F 5 HOH 98 398 83 HOH HOH A . F 5 HOH 99 399 74 HOH HOH A . F 5 HOH 100 400 148 HOH HOH A . F 5 HOH 101 401 96 HOH HOH A . F 5 HOH 102 402 67 HOH HOH A . F 5 HOH 103 403 12 HOH HOH A . F 5 HOH 104 404 132 HOH HOH A . F 5 HOH 105 405 78 HOH HOH A . F 5 HOH 106 406 351 HOH HOH A . F 5 HOH 107 407 121 HOH HOH A . F 5 HOH 108 408 199 HOH HOH A . F 5 HOH 109 409 1315 HOH HOH A . F 5 HOH 110 410 303 HOH HOH A . F 5 HOH 111 411 195 HOH HOH A . F 5 HOH 112 412 3 HOH HOH A . F 5 HOH 113 413 68 HOH HOH A . F 5 HOH 114 414 1313 HOH HOH A . F 5 HOH 115 415 25 HOH HOH A . F 5 HOH 116 416 123 HOH HOH A . F 5 HOH 117 417 53 HOH HOH A . F 5 HOH 118 418 122 HOH HOH A . F 5 HOH 119 419 1068 HOH HOH A . F 5 HOH 120 420 125 HOH HOH A . F 5 HOH 121 421 333 HOH HOH A . F 5 HOH 122 422 156 HOH HOH A . F 5 HOH 123 423 95 HOH HOH A . F 5 HOH 124 424 1279 HOH HOH A . F 5 HOH 125 425 4 HOH HOH A . F 5 HOH 126 426 24 HOH HOH A . F 5 HOH 127 427 51 HOH HOH A . F 5 HOH 128 428 582 HOH HOH A . F 5 HOH 129 429 397 HOH HOH A . F 5 HOH 130 430 381 HOH HOH A . F 5 HOH 131 431 1309 HOH HOH A . F 5 HOH 132 432 7 HOH HOH A . F 5 HOH 133 433 1296 HOH HOH A . F 5 HOH 134 434 16 HOH HOH A . F 5 HOH 135 435 1222 HOH HOH A . F 5 HOH 136 436 71 HOH HOH A . F 5 HOH 137 437 73 HOH HOH A . F 5 HOH 138 438 1286 HOH HOH A . F 5 HOH 139 439 1094 HOH HOH A . F 5 HOH 140 440 212 HOH HOH A . F 5 HOH 141 441 1189 HOH HOH A . F 5 HOH 142 442 40 HOH HOH A . F 5 HOH 143 443 80 HOH HOH A . F 5 HOH 144 444 94 HOH HOH A . F 5 HOH 145 445 1238 HOH HOH A . F 5 HOH 146 446 8 HOH HOH A . F 5 HOH 147 447 952 HOH HOH A . F 5 HOH 148 448 79 HOH HOH A . F 5 HOH 149 449 944 HOH HOH A . F 5 HOH 150 450 97 HOH HOH A . F 5 HOH 151 451 104 HOH HOH A . F 5 HOH 152 452 576 HOH HOH A . F 5 HOH 153 453 188 HOH HOH A . F 5 HOH 154 454 1119 HOH HOH A . F 5 HOH 155 455 330 HOH HOH A . F 5 HOH 156 456 107 HOH HOH A . F 5 HOH 157 457 509 HOH HOH A . F 5 HOH 158 458 1134 HOH HOH A . F 5 HOH 159 459 726 HOH HOH A . F 5 HOH 160 460 163 HOH HOH A . F 5 HOH 161 461 408 HOH HOH A . F 5 HOH 162 462 756 HOH HOH A . F 5 HOH 163 463 361 HOH HOH A . F 5 HOH 164 464 126 HOH HOH A . F 5 HOH 165 465 63 HOH HOH A . F 5 HOH 166 466 319 HOH HOH A . F 5 HOH 167 467 556 HOH HOH A . F 5 HOH 168 468 280 HOH HOH A . F 5 HOH 169 469 801 HOH HOH A . F 5 HOH 170 470 1307 HOH HOH A . F 5 HOH 171 471 250 HOH HOH A . F 5 HOH 172 472 342 HOH HOH A . F 5 HOH 173 473 267 HOH HOH A . F 5 HOH 174 474 1276 HOH HOH A . F 5 HOH 175 475 370 HOH HOH A . F 5 HOH 176 476 3 HOH HOH A . F 5 HOH 177 477 224 HOH HOH A . F 5 HOH 178 478 1306 HOH HOH A . F 5 HOH 179 479 1287 HOH HOH A . F 5 HOH 180 480 326 HOH HOH A . F 5 HOH 181 481 695 HOH HOH A . F 5 HOH 182 482 135 HOH HOH A . F 5 HOH 183 483 5 HOH HOH A . F 5 HOH 184 484 202 HOH HOH A . F 5 HOH 185 485 674 HOH HOH A . F 5 HOH 186 486 2 HOH HOH A . F 5 HOH 187 487 919 HOH HOH A . F 5 HOH 188 488 318 HOH HOH A . F 5 HOH 189 489 521 HOH HOH A . F 5 HOH 190 490 309 HOH HOH A . F 5 HOH 191 491 1299 HOH HOH A . F 5 HOH 192 492 11 HOH HOH A . F 5 HOH 193 493 331 HOH HOH A . F 5 HOH 194 494 711 HOH HOH A . F 5 HOH 195 495 805 HOH HOH A . F 5 HOH 196 496 1314 HOH HOH A . F 5 HOH 197 497 315 HOH HOH A . F 5 HOH 198 498 941 HOH HOH A . F 5 HOH 199 499 356 HOH HOH A . F 5 HOH 200 500 263 HOH HOH A . F 5 HOH 201 501 152 HOH HOH A . F 5 HOH 202 502 208 HOH HOH A . F 5 HOH 203 503 1071 HOH HOH A . F 5 HOH 204 504 1284 HOH HOH A . F 5 HOH 205 505 180 HOH HOH A . F 5 HOH 206 506 350 HOH HOH A . F 5 HOH 207 507 14 HOH HOH A . F 5 HOH 208 508 363 HOH HOH A . F 5 HOH 209 509 371 HOH HOH A . F 5 HOH 210 510 313 HOH HOH A . F 5 HOH 211 511 9 HOH HOH A . F 5 HOH 212 512 12 HOH HOH A . F 5 HOH 213 513 185 HOH HOH A . F 5 HOH 214 514 429 HOH HOH A . F 5 HOH 215 515 70 HOH HOH A . F 5 HOH 216 516 376 HOH HOH A . F 5 HOH 217 517 772 HOH HOH A . F 5 HOH 218 518 13 HOH HOH A . F 5 HOH 219 519 1074 HOH HOH A . F 5 HOH 220 520 346 HOH HOH A . F 5 HOH 221 521 1292 HOH HOH A . F 5 HOH 222 522 1078 HOH HOH A . G 5 HOH 1 201 64 HOH HOH B . G 5 HOH 2 202 549 HOH HOH B . G 5 HOH 3 203 900 HOH HOH B . G 5 HOH 4 204 240 HOH HOH B . G 5 HOH 5 205 364 HOH HOH B . G 5 HOH 6 206 358 HOH HOH B . G 5 HOH 7 207 531 HOH HOH B . G 5 HOH 8 208 758 HOH HOH B . G 5 HOH 9 209 1249 HOH HOH B . G 5 HOH 10 210 398 HOH HOH B . G 5 HOH 11 211 50 HOH HOH B . G 5 HOH 12 212 654 HOH HOH B . G 5 HOH 13 213 120 HOH HOH B . G 5 HOH 14 214 452 HOH HOH B . G 5 HOH 15 215 264 HOH HOH B . G 5 HOH 16 216 743 HOH HOH B . G 5 HOH 17 217 232 HOH HOH B . G 5 HOH 18 218 353 HOH HOH B . G 5 HOH 19 219 1140 HOH HOH B . G 5 HOH 20 220 332 HOH HOH B . G 5 HOH 21 221 444 HOH HOH B . G 5 HOH 22 222 205 HOH HOH B . G 5 HOH 23 223 343 HOH HOH B . G 5 HOH 24 224 131 HOH HOH B . G 5 HOH 25 225 82 HOH HOH B . G 5 HOH 26 226 172 HOH HOH B . G 5 HOH 27 227 60 HOH HOH B . G 5 HOH 28 228 54 HOH HOH B . G 5 HOH 29 229 723 HOH HOH B . G 5 HOH 30 230 75 HOH HOH B . G 5 HOH 31 231 1278 HOH HOH B . G 5 HOH 32 232 276 HOH HOH B . G 5 HOH 33 233 1312 HOH HOH B . G 5 HOH 34 234 282 HOH HOH B . G 5 HOH 35 235 110 HOH HOH B . G 5 HOH 36 236 127 HOH HOH B . G 5 HOH 37 237 166 HOH HOH B . G 5 HOH 38 238 272 HOH HOH B . G 5 HOH 39 239 1 HOH HOH B . G 5 HOH 40 240 325 HOH HOH B . G 5 HOH 41 241 30 HOH HOH B . G 5 HOH 42 242 69 HOH HOH B . G 5 HOH 43 243 128 HOH HOH B . G 5 HOH 44 244 300 HOH HOH B . G 5 HOH 45 245 133 HOH HOH B . G 5 HOH 46 246 9 HOH HOH B . G 5 HOH 47 247 231 HOH HOH B . G 5 HOH 48 248 129 HOH HOH B . G 5 HOH 49 249 41 HOH HOH B . G 5 HOH 50 250 14 HOH HOH B . G 5 HOH 51 251 144 HOH HOH B . G 5 HOH 52 252 271 HOH HOH B . G 5 HOH 53 253 181 HOH HOH B . G 5 HOH 54 254 31 HOH HOH B . G 5 HOH 55 255 143 HOH HOH B . G 5 HOH 56 256 52 HOH HOH B . G 5 HOH 57 257 72 HOH HOH B . G 5 HOH 58 258 391 HOH HOH B . G 5 HOH 59 259 347 HOH HOH B . G 5 HOH 60 260 221 HOH HOH B . G 5 HOH 61 261 47 HOH HOH B . G 5 HOH 62 262 62 HOH HOH B . G 5 HOH 63 263 10 HOH HOH B . G 5 HOH 64 264 150 HOH HOH B . G 5 HOH 65 265 103 HOH HOH B . G 5 HOH 66 266 1277 HOH HOH B . G 5 HOH 67 267 252 HOH HOH B . G 5 HOH 68 268 59 HOH HOH B . G 5 HOH 69 269 243 HOH HOH B . G 5 HOH 70 270 61 HOH HOH B . G 5 HOH 71 271 302 HOH HOH B . G 5 HOH 72 272 287 HOH HOH B . G 5 HOH 73 273 117 HOH HOH B . G 5 HOH 74 274 11 HOH HOH B . G 5 HOH 75 275 242 HOH HOH B . G 5 HOH 76 276 114 HOH HOH B . G 5 HOH 77 277 20 HOH HOH B . G 5 HOH 78 278 84 HOH HOH B . G 5 HOH 79 279 77 HOH HOH B . G 5 HOH 80 280 43 HOH HOH B . G 5 HOH 81 281 175 HOH HOH B . G 5 HOH 82 282 147 HOH HOH B . G 5 HOH 83 283 1106 HOH HOH B . G 5 HOH 84 284 216 HOH HOH B . G 5 HOH 85 285 387 HOH HOH B . G 5 HOH 86 286 22 HOH HOH B . G 5 HOH 87 287 235 HOH HOH B . G 5 HOH 88 288 1305 HOH HOH B . G 5 HOH 89 289 99 HOH HOH B . G 5 HOH 90 290 416 HOH HOH B . G 5 HOH 91 291 89 HOH HOH B . G 5 HOH 92 292 1066 HOH HOH B . G 5 HOH 93 293 220 HOH HOH B . G 5 HOH 94 294 137 HOH HOH B . G 5 HOH 95 295 106 HOH HOH B . G 5 HOH 96 296 13 HOH HOH B . G 5 HOH 97 297 88 HOH HOH B . G 5 HOH 98 298 160 HOH HOH B . G 5 HOH 99 299 112 HOH HOH B . G 5 HOH 100 300 32 HOH HOH B . G 5 HOH 101 301 297 HOH HOH B . G 5 HOH 102 302 341 HOH HOH B . G 5 HOH 103 303 311 HOH HOH B . G 5 HOH 104 304 316 HOH HOH B . G 5 HOH 105 305 299 HOH HOH B . G 5 HOH 106 306 38 HOH HOH B . G 5 HOH 107 307 142 HOH HOH B . G 5 HOH 108 308 1285 HOH HOH B . G 5 HOH 109 309 101 HOH HOH B . G 5 HOH 110 310 118 HOH HOH B . G 5 HOH 111 311 635 HOH HOH B . G 5 HOH 112 312 215 HOH HOH B . G 5 HOH 113 313 37 HOH HOH B . G 5 HOH 114 314 704 HOH HOH B . G 5 HOH 115 315 177 HOH HOH B . G 5 HOH 116 316 23 HOH HOH B . G 5 HOH 117 317 170 HOH HOH B . G 5 HOH 118 318 48 HOH HOH B . G 5 HOH 119 319 445 HOH HOH B . G 5 HOH 120 320 91 HOH HOH B . G 5 HOH 121 321 1274 HOH HOH B . G 5 HOH 122 322 44 HOH HOH B . G 5 HOH 123 323 28 HOH HOH B . G 5 HOH 124 324 161 HOH HOH B . G 5 HOH 125 325 1291 HOH HOH B . G 5 HOH 126 326 197 HOH HOH B . G 5 HOH 127 327 100 HOH HOH B . G 5 HOH 128 328 1294 HOH HOH B . G 5 HOH 129 329 182 HOH HOH B . G 5 HOH 130 330 29 HOH HOH B . G 5 HOH 131 331 55 HOH HOH B . G 5 HOH 132 332 1126 HOH HOH B . G 5 HOH 133 333 98 HOH HOH B . G 5 HOH 134 334 717 HOH HOH B . G 5 HOH 135 335 334 HOH HOH B . G 5 HOH 136 336 141 HOH HOH B . G 5 HOH 137 337 207 HOH HOH B . G 5 HOH 138 338 65 HOH HOH B . G 5 HOH 139 339 234 HOH HOH B . G 5 HOH 140 340 1293 HOH HOH B . G 5 HOH 141 341 619 HOH HOH B . G 5 HOH 142 342 339 HOH HOH B . G 5 HOH 143 343 362 HOH HOH B . G 5 HOH 144 344 960 HOH HOH B . G 5 HOH 145 345 178 HOH HOH B . G 5 HOH 146 346 90 HOH HOH B . G 5 HOH 147 347 463 HOH HOH B . G 5 HOH 148 348 87 HOH HOH B . G 5 HOH 149 349 1280 HOH HOH B . G 5 HOH 150 350 191 HOH HOH B . G 5 HOH 151 351 623 HOH HOH B . G 5 HOH 152 352 1046 HOH HOH B . G 5 HOH 153 353 335 HOH HOH B . G 5 HOH 154 354 1304 HOH HOH B . G 5 HOH 155 355 304 HOH HOH B . G 5 HOH 156 356 203 HOH HOH B . G 5 HOH 157 357 290 HOH HOH B . G 5 HOH 158 358 541 HOH HOH B . G 5 HOH 159 359 1077 HOH HOH B . G 5 HOH 160 360 479 HOH HOH B . G 5 HOH 161 361 389 HOH HOH B . G 5 HOH 162 362 718 HOH HOH B . G 5 HOH 163 363 1072 HOH HOH B . G 5 HOH 164 364 283 HOH HOH B . G 5 HOH 165 365 1316 HOH HOH B . G 5 HOH 166 366 898 HOH HOH B . G 5 HOH 167 367 291 HOH HOH B . G 5 HOH 168 368 340 HOH HOH B . G 5 HOH 169 369 373 HOH HOH B . G 5 HOH 170 370 615 HOH HOH B . G 5 HOH 171 371 1303 HOH HOH B . G 5 HOH 172 372 667 HOH HOH B . G 5 HOH 173 373 190 HOH HOH B . G 5 HOH 174 374 310 HOH HOH B . G 5 HOH 175 375 431 HOH HOH B . G 5 HOH 176 376 149 HOH HOH B . G 5 HOH 177 377 1173 HOH HOH B . G 5 HOH 178 378 1000 HOH HOH B . G 5 HOH 179 379 183 HOH HOH B . G 5 HOH 180 380 418 HOH HOH B . G 5 HOH 181 381 1163 HOH HOH B . G 5 HOH 182 382 1311 HOH HOH B . G 5 HOH 183 383 176 HOH HOH B . G 5 HOH 184 384 424 HOH HOH B . G 5 HOH 185 385 981 HOH HOH B . G 5 HOH 186 386 491 HOH HOH B . G 5 HOH 187 387 470 HOH HOH B . G 5 HOH 188 388 248 HOH HOH B . G 5 HOH 189 389 1298 HOH HOH B . G 5 HOH 190 390 265 HOH HOH B . G 5 HOH 191 391 184 HOH HOH B . G 5 HOH 192 392 360 HOH HOH B . G 5 HOH 193 393 410 HOH HOH B . G 5 HOH 194 394 355 HOH HOH B . G 5 HOH 195 395 274 HOH HOH B . G 5 HOH 196 396 314 HOH HOH B . G 5 HOH 197 397 157 HOH HOH B . G 5 HOH 198 398 566 HOH HOH B . G 5 HOH 199 399 321 HOH HOH B . G 5 HOH 200 400 792 HOH HOH B . G 5 HOH 201 401 558 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.21.1_5286 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 Aimless 0.7.15 02/11/23 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.28 'Apr. 15, 2021' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS 'Jun 30, 2023' 'Jun. 30, 2023' program 'Wolfgang Kabsch' Wolfgang.Kabsch@mpimf-heidelberg.mpg.de 'data reduction' http://xds.mpimf-heidelberg.mpg.de ? ? 5 PHASER 2.8.3 'May 17, 2020' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing https://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software ? ? # _cell.entry_id 7HDP _cell.length_a 88.806 _cell.length_b 88.806 _cell.length_c 39.518 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HDP _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 _exptl.entry_id 7HDP # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.71 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '100 mM CHES, 28% PEG 3000' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.pdbx_collection_date 2023-05-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_scattering_type x-ray _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.88557 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_wavelength_list 0.88557 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7HDP _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 44.400 _reflns.d_resolution_high 1.000 _reflns.number_obs 165516 _reflns.number_all ? _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.100 _reflns.B_iso_Wilson_estimate 11.750 _reflns.pdbx_redundancy 6.400 _reflns.pdbx_Rrim_I_all 0.049 _reflns.pdbx_Rpim_I_all 0.019 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 1053476 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.000 1.020 ? 33755 7519 ? 1.062 ? ? ? 4.500 ? 0.900 ? ? ? ? ? ? 91.500 1.200 0.545 0.697 1 2 5.480 44.400 ? 7501 1096 ? 0.027 ? ? ? 6.800 ? 52.500 ? ? ? ? ? ? 99.900 0.029 0.011 0.999 # _refine.entry_id 7HDP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.0000 _refine.ls_d_res_low 44.4000 _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.4900 _refine.ls_number_reflns_obs 165434 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1455 _refine.ls_R_factor_R_work 0.1448 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1590 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_number_reflns_R_free 7976 _refine.ls_number_reflns_R_work 157458 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.7859 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1000 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 67.730 _refine.B_iso_min 7.950 _refine.pdbx_overall_phase_error 18.2100 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.0000 _refine_hist.d_res_low 44.4000 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 423 _refine_hist.number_atoms_total 3006 _refine_hist.pdbx_number_residues_total 336 _refine_hist.pdbx_B_iso_mean_ligand 14.91 _refine_hist.pdbx_B_iso_mean_solvent 29.78 _refine_hist.pdbx_number_atoms_protein 2542 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 1.0000 1.0100 30 89.0000 4727 . 0.4014 0.3741 . 243 0.0000 4970 . 'X-RAY DIFFRACTION' 1.0100 1.0200 30 97.0000 5113 . 0.3236 0.3263 . 227 0.0000 5340 . 'X-RAY DIFFRACTION' 1.0200 1.0400 30 100.0000 5246 . 0.2829 0.2693 . 248 0.0000 5494 . 'X-RAY DIFFRACTION' 1.0400 1.0500 30 100.0000 5179 . 0.2468 0.2503 . 282 0.0000 5461 . 'X-RAY DIFFRACTION' 1.0500 1.0600 30 100.0000 5201 . 0.2305 0.2463 . 321 0.0000 5522 . 'X-RAY DIFFRACTION' 1.0600 1.0800 30 100.0000 5252 . 0.2137 0.2432 . 249 0.0000 5501 . 'X-RAY DIFFRACTION' 1.0800 1.0900 30 100.0000 5285 . 0.1942 0.2185 . 266 0.0000 5551 . 'X-RAY DIFFRACTION' 1.0900 1.1100 30 100.0000 5210 . 0.1753 0.1889 . 257 0.0000 5467 . 'X-RAY DIFFRACTION' 1.1100 1.1300 30 100.0000 5252 . 0.1681 0.1850 . 278 0.0000 5530 . 'X-RAY DIFFRACTION' 1.1300 1.1400 30 100.0000 5273 . 0.1509 0.1665 . 237 0.0000 5510 . 'X-RAY DIFFRACTION' 1.1400 1.1600 30 100.0000 5277 . 0.1438 0.1575 . 260 0.0000 5537 . 'X-RAY DIFFRACTION' 1.1600 1.1900 30 100.0000 5273 . 0.1345 0.1576 . 268 0.0000 5541 . 'X-RAY DIFFRACTION' 1.1900 1.2100 30 100.0000 5194 . 0.1286 0.1674 . 293 0.0000 5487 . 'X-RAY DIFFRACTION' 1.2100 1.2300 30 100.0000 5283 . 0.1244 0.1497 . 235 0.0000 5518 . 'X-RAY DIFFRACTION' 1.2300 1.2600 30 100.0000 5233 . 0.1256 0.1347 . 260 0.0000 5493 . 'X-RAY DIFFRACTION' 1.2600 1.2900 30 100.0000 5278 . 0.1249 0.1491 . 275 0.0000 5553 . 'X-RAY DIFFRACTION' 1.2900 1.3200 30 100.0000 5250 . 0.1256 0.1475 . 290 0.0000 5540 . 'X-RAY DIFFRACTION' 1.3200 1.3600 30 100.0000 5236 . 0.1319 0.1451 . 273 0.0000 5509 . 'X-RAY DIFFRACTION' 1.3600 1.4000 30 100.0000 5294 . 0.1285 0.1618 . 245 0.0000 5539 . 'X-RAY DIFFRACTION' 1.4000 1.4400 30 100.0000 5223 . 0.1281 0.1579 . 266 0.0000 5489 . 'X-RAY DIFFRACTION' 1.4400 1.4900 30 100.0000 5335 . 0.1232 0.1285 . 253 0.0000 5588 . 'X-RAY DIFFRACTION' 1.4900 1.5500 30 100.0000 5225 . 0.1181 0.1239 . 280 0.0000 5505 . 'X-RAY DIFFRACTION' 1.5500 1.6200 30 100.0000 5289 . 0.1182 0.1345 . 261 0.0000 5550 . 'X-RAY DIFFRACTION' 1.6200 1.7100 30 100.0000 5318 . 0.1256 0.1511 . 272 0.0000 5590 . 'X-RAY DIFFRACTION' 1.7100 1.8200 30 100.0000 5284 . 0.1351 0.1397 . 250 0.0000 5534 . 'X-RAY DIFFRACTION' 1.8200 1.9600 30 100.0000 5276 . 0.1343 0.1359 . 281 0.0000 5557 . 'X-RAY DIFFRACTION' 1.9600 2.1500 30 100.0000 5306 . 0.1387 0.1440 . 285 0.0000 5591 . 'X-RAY DIFFRACTION' 2.1500 2.4700 30 100.0000 5311 . 0.1372 0.1449 . 291 0.0000 5602 . 'X-RAY DIFFRACTION' 2.4700 3.1100 30 100.0000 5345 . 0.1491 0.1672 . 260 0.0000 5605 . 'X-RAY DIFFRACTION' 3.1100 44.4000 30 100.0000 5490 . 0.1505 0.1707 . 270 0.0000 5760 . 'X-RAY DIFFRACTION' # _struct.entry_id 7HDP _struct.title 'PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0003638' _struct.pdbx_CASP_flag ? _struct.pdbx_model_details ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7HDP _struct_keywords.pdbx_keywords 'VIRAL PROTEIN, Hydrolase' _struct_keywords.text 'Macrodomain, ADP-ribose, SARS-CoV-2, fragment-based drug discovery, VIRAL PROTEIN, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_SARS2 _struct_ref.pdbx_db_accession P0DTD1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VNSFSGYLKLTDNVYIKNADIVEEAKKVKPTVVVNAANVYLKHGGGVAGALNKATNNAMQVESDDYIATNGPLKVGGSCV LSGHNLAKHCLHVVGPNVNKGEDIQLLKSAYENFNQHEVLLAPLLSAGIFGADPIHSLRVCVDTVRTNVYLAVFDKNLYD KLVSSFL ; _struct_ref.pdbx_align_begin 1025 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7HDP A 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 2 1 7HDP B 3 ? 169 ? P0DTD1 1025 ? 1191 ? 3 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7HDP SER A 1 ? UNP P0DTD1 ? ? 'expression tag' 1 1 1 7HDP MET A 2 ? UNP P0DTD1 ? ? 'expression tag' 2 2 2 7HDP SER B 1 ? UNP P0DTD1 ? ? 'expression tag' 1 3 2 7HDP MET B 2 ? UNP P0DTD1 ? ? 'expression tag' 2 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F 2 1 B,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 22 ? LYS A 31 ? ASP A 22 LYS A 31 1 ? 10 HELX_P HELX_P2 AA2 GLY A 47 ? THR A 57 ? GLY A 47 THR A 57 1 ? 11 HELX_P HELX_P3 AA3 ASN A 59 ? GLY A 73 ? ASN A 59 GLY A 73 1 ? 15 HELX_P HELX_P4 AA4 ASN A 99 ? GLY A 103 ? ASN A 99 GLY A 103 5 ? 5 HELX_P HELX_P5 AA5 GLN A 107 ? ASN A 115 ? GLN A 107 ASN A 115 1 ? 9 HELX_P HELX_P6 AA6 PHE A 116 ? HIS A 119 ? PHE A 116 HIS A 119 5 ? 4 HELX_P HELX_P7 AA7 ALA A 129 ? GLY A 133 ? ALA A 129 GLY A 133 5 ? 5 HELX_P HELX_P8 AA8 ASP A 135 ? VAL A 147 ? ASP A 135 VAL A 147 1 ? 13 HELX_P HELX_P9 AA9 ASP A 157 ? PHE A 168 ? ASP A 157 PHE A 168 1 ? 12 HELX_P HELX_P10 AB1 ASP B 22 ? LYS B 31 ? ASP B 22 LYS B 31 1 ? 10 HELX_P HELX_P11 AB2 GLY B 47 ? THR B 57 ? GLY B 47 THR B 57 1 ? 11 HELX_P HELX_P12 AB3 ASN B 59 ? GLY B 73 ? ASN B 59 GLY B 73 1 ? 15 HELX_P HELX_P13 AB4 ASN B 99 ? GLY B 103 ? ASN B 99 GLY B 103 5 ? 5 HELX_P HELX_P14 AB5 ASP B 105 ? GLN B 107 ? ASP B 105 GLN B 107 5 ? 3 HELX_P HELX_P15 AB6 LEU B 108 ? ASN B 115 ? LEU B 108 ASN B 115 1 ? 8 HELX_P HELX_P16 AB7 PHE B 116 ? HIS B 119 ? PHE B 116 HIS B 119 5 ? 4 HELX_P HELX_P17 AB8 ALA B 129 ? GLY B 133 ? ALA B 129 GLY B 133 5 ? 5 HELX_P HELX_P18 AB9 ASP B 135 ? VAL B 147 ? ASP B 135 VAL B 147 1 ? 13 HELX_P HELX_P19 AC1 ASP B 157 ? LEU B 169 ? ASP B 157 LEU B 169 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 3 ? AA3 ? 4 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 10 ? LYS A 11 ? LEU A 10 LYS A 11 AA1 2 VAL A 16 ? ASN A 20 ? VAL A 16 ASN A 20 AA1 3 ASN A 150 ? VAL A 155 ? ASN A 150 VAL A 155 AA1 4 VAL A 121 ? ALA A 124 ? VAL A 121 ALA A 124 AA2 1 VAL A 34 ? ALA A 38 ? VAL A 34 ALA A 38 AA2 2 HIS A 91 ? VAL A 95 ? HIS A 91 VAL A 95 AA2 3 SER A 80 ? SER A 84 ? SER A 80 SER A 84 AA3 1 LEU B 10 ? LYS B 11 ? LEU B 10 LYS B 11 AA3 2 VAL B 16 ? ASN B 20 ? VAL B 16 ASN B 20 AA3 3 ASN B 150 ? VAL B 155 ? ASN B 150 VAL B 155 AA3 4 VAL B 121 ? ALA B 124 ? VAL B 121 ALA B 124 AA4 1 VAL B 34 ? ALA B 38 ? VAL B 34 ALA B 38 AA4 2 HIS B 91 ? VAL B 95 ? HIS B 91 VAL B 95 AA4 3 SER B 80 ? SER B 84 ? SER B 80 SER B 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 10 ? N LEU A 10 O ILE A 18 ? O ILE A 18 AA1 2 3 N LYS A 19 ? N LYS A 19 O VAL A 155 ? O VAL A 155 AA1 3 4 O TYR A 152 ? O TYR A 152 N LEU A 122 ? N LEU A 122 AA2 1 2 N ASN A 37 ? N ASN A 37 O VAL A 95 ? O VAL A 95 AA2 2 3 O CYS A 92 ? O CYS A 92 N LEU A 83 ? N LEU A 83 AA3 1 2 N LEU B 10 ? N LEU B 10 O ILE B 18 ? O ILE B 18 AA3 2 3 N TYR B 17 ? N TYR B 17 O LEU B 153 ? O LEU B 153 AA3 3 4 O TYR B 152 ? O TYR B 152 N LEU B 122 ? N LEU B 122 AA4 1 2 N ASN B 37 ? N ASN B 37 O LEU B 93 ? O LEU B 93 AA4 2 3 O HIS B 94 ? O HIS B 94 N CYS B 81 ? N CYS B 81 # _pdbx_entry_details.entry_id 7HDP _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 167 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 66 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HG _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 1 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 B _pdbx_validate_symm_contact.site_symmetry_2 2_655 _pdbx_validate_symm_contact.dist 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 86 ? ? 55.84 -133.35 2 1 SER A 128 ? B 70.32 -8.12 3 1 ASP A 157 ? B 177.90 153.27 4 1 PHE A 168 ? B -148.43 -49.31 5 1 HIS B 86 ? ? 57.34 -127.86 # _phasing.method MR # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 520 ? 5.89 . 2 1 O ? A HOH 521 ? 5.95 . 3 1 O ? A HOH 522 ? 7.55 . 4 1 O ? B HOH 401 ? 6.33 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A MET 2 ? A MET 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1A8W N2 N Y N 1 A1A8W C3 C Y N 2 A1A8W C6 C Y N 3 A1A8W C9 C N N 4 A1A8W C12 C N N 5 A1A8W C1 C N N 6 A1A8W C10 C N N 7 A1A8W C11 C N N 8 A1A8W C2 C N S 9 A1A8W C4 C Y N 10 A1A8W C5 C Y N 11 A1A8W C7 C Y N 12 A1A8W C8 C Y N 13 A1A8W N1 N N N 14 A1A8W N3 N Y N 15 A1A8W N4 N Y N 16 A1A8W O1 O N N 17 A1A8W H10 H N N 18 A1A8W H15 H N N 19 A1A8W H16 H N N 20 A1A8W H4 H N N 21 A1A8W H3 H N N 22 A1A8W H11 H N N 23 A1A8W H12 H N N 24 A1A8W H14 H N N 25 A1A8W H13 H N N 26 A1A8W H1 H N N 27 A1A8W H6 H N N 28 A1A8W H7 H N N 29 A1A8W H8 H N N 30 A1A8W H5 H N N 31 A1A8W H9 H N N 32 A1A8W H2 H N N 33 ALA N N N N 34 ALA CA C N S 35 ALA C C N N 36 ALA O O N N 37 ALA CB C N N 38 ALA OXT O N N 39 ALA H H N N 40 ALA H2 H N N 41 ALA HA H N N 42 ALA HB1 H N N 43 ALA HB2 H N N 44 ALA HB3 H N N 45 ALA HXT H N N 46 ARG N N N N 47 ARG CA C N S 48 ARG C C N N 49 ARG O O N N 50 ARG CB C N N 51 ARG CG C N N 52 ARG CD C N N 53 ARG NE N N N 54 ARG CZ C N N 55 ARG NH1 N N N 56 ARG NH2 N N N 57 ARG OXT O N N 58 ARG H H N N 59 ARG H2 H N N 60 ARG HA H N N 61 ARG HB2 H N N 62 ARG HB3 H N N 63 ARG HG2 H N N 64 ARG HG3 H N N 65 ARG HD2 H N N 66 ARG HD3 H N N 67 ARG HE H N N 68 ARG HH11 H N N 69 ARG HH12 H N N 70 ARG HH21 H N N 71 ARG HH22 H N N 72 ARG HXT H N N 73 ASN N N N N 74 ASN CA C N S 75 ASN C C N N 76 ASN O O N N 77 ASN CB C N N 78 ASN CG C N N 79 ASN OD1 O N N 80 ASN ND2 N N N 81 ASN OXT O N N 82 ASN H H N N 83 ASN H2 H N N 84 ASN HA H N N 85 ASN HB2 H N N 86 ASN HB3 H N N 87 ASN HD21 H N N 88 ASN HD22 H N N 89 ASN HXT H N N 90 ASP N N N N 91 ASP CA C N S 92 ASP C C N N 93 ASP O O N N 94 ASP CB C N N 95 ASP CG C N N 96 ASP OD1 O N N 97 ASP OD2 O N N 98 ASP OXT O N N 99 ASP H H N N 100 ASP H2 H N N 101 ASP HA H N N 102 ASP HB2 H N N 103 ASP HB3 H N N 104 ASP HD2 H N N 105 ASP HXT H N N 106 CL CL CL N N 107 CYS N N N N 108 CYS CA C N R 109 CYS C C N N 110 CYS O O N N 111 CYS CB C N N 112 CYS SG S N N 113 CYS OXT O N N 114 CYS H H N N 115 CYS H2 H N N 116 CYS HA H N N 117 CYS HB2 H N N 118 CYS HB3 H N N 119 CYS HG H N N 120 CYS HXT H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 PHE N N N N 284 PHE CA C N S 285 PHE C C N N 286 PHE O O N N 287 PHE CB C N N 288 PHE CG C Y N 289 PHE CD1 C Y N 290 PHE CD2 C Y N 291 PHE CE1 C Y N 292 PHE CE2 C Y N 293 PHE CZ C Y N 294 PHE OXT O N N 295 PHE H H N N 296 PHE H2 H N N 297 PHE HA H N N 298 PHE HB2 H N N 299 PHE HB3 H N N 300 PHE HD1 H N N 301 PHE HD2 H N N 302 PHE HE1 H N N 303 PHE HE2 H N N 304 PHE HZ H N N 305 PHE HXT H N N 306 PRO N N N N 307 PRO CA C N S 308 PRO C C N N 309 PRO O O N N 310 PRO CB C N N 311 PRO CG C N N 312 PRO CD C N N 313 PRO OXT O N N 314 PRO H H N N 315 PRO HA H N N 316 PRO HB2 H N N 317 PRO HB3 H N N 318 PRO HG2 H N N 319 PRO HG3 H N N 320 PRO HD2 H N N 321 PRO HD3 H N N 322 PRO HXT H N N 323 SER N N N N 324 SER CA C N S 325 SER C C N N 326 SER O O N N 327 SER CB C N N 328 SER OG O N N 329 SER OXT O N N 330 SER H H N N 331 SER H2 H N N 332 SER HA H N N 333 SER HB2 H N N 334 SER HB3 H N N 335 SER HG H N N 336 SER HXT H N N 337 TFA C1 C N N 338 TFA C2 C N N 339 TFA O O N N 340 TFA F1 F N N 341 TFA F2 F N N 342 TFA F3 F N N 343 TFA OXT O N N 344 TFA HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A8W C1 O1 sing N N 1 A1A8W C1 C2 sing N N 2 A1A8W C12 C9 sing N N 3 A1A8W C12 C11 sing N N 4 A1A8W C9 C2 sing N N 5 A1A8W C9 C10 sing N N 6 A1A8W C2 N1 sing N N 7 A1A8W C11 C10 sing N N 8 A1A8W N1 C3 sing N N 9 A1A8W C3 C6 doub Y N 10 A1A8W C3 N2 sing Y N 11 A1A8W C7 C6 sing Y N 12 A1A8W C7 C8 doub Y N 13 A1A8W C6 C5 sing Y N 14 A1A8W N2 C4 doub Y N 15 A1A8W C8 N4 sing Y N 16 A1A8W C5 N4 sing Y N 17 A1A8W C5 N3 doub Y N 18 A1A8W C4 N3 sing Y N 19 A1A8W C9 H10 sing N N 20 A1A8W C12 H15 sing N N 21 A1A8W C12 H16 sing N N 22 A1A8W C1 H4 sing N N 23 A1A8W C1 H3 sing N N 24 A1A8W C10 H11 sing N N 25 A1A8W C10 H12 sing N N 26 A1A8W C11 H14 sing N N 27 A1A8W C11 H13 sing N N 28 A1A8W C2 H1 sing N N 29 A1A8W C4 H6 sing N N 30 A1A8W C7 H7 sing N N 31 A1A8W C8 H8 sing N N 32 A1A8W N1 H5 sing N N 33 A1A8W N4 H9 sing N N 34 A1A8W O1 H2 sing N N 35 ALA N CA sing N N 36 ALA N H sing N N 37 ALA N H2 sing N N 38 ALA CA C sing N N 39 ALA CA CB sing N N 40 ALA CA HA sing N N 41 ALA C O doub N N 42 ALA C OXT sing N N 43 ALA CB HB1 sing N N 44 ALA CB HB2 sing N N 45 ALA CB HB3 sing N N 46 ALA OXT HXT sing N N 47 ARG N CA sing N N 48 ARG N H sing N N 49 ARG N H2 sing N N 50 ARG CA C sing N N 51 ARG CA CB sing N N 52 ARG CA HA sing N N 53 ARG C O doub N N 54 ARG C OXT sing N N 55 ARG CB CG sing N N 56 ARG CB HB2 sing N N 57 ARG CB HB3 sing N N 58 ARG CG CD sing N N 59 ARG CG HG2 sing N N 60 ARG CG HG3 sing N N 61 ARG CD NE sing N N 62 ARG CD HD2 sing N N 63 ARG CD HD3 sing N N 64 ARG NE CZ sing N N 65 ARG NE HE sing N N 66 ARG CZ NH1 sing N N 67 ARG CZ NH2 doub N N 68 ARG NH1 HH11 sing N N 69 ARG NH1 HH12 sing N N 70 ARG NH2 HH21 sing N N 71 ARG NH2 HH22 sing N N 72 ARG OXT HXT sing N N 73 ASN N CA sing N N 74 ASN N H sing N N 75 ASN N H2 sing N N 76 ASN CA C sing N N 77 ASN CA CB sing N N 78 ASN CA HA sing N N 79 ASN C O doub N N 80 ASN C OXT sing N N 81 ASN CB CG sing N N 82 ASN CB HB2 sing N N 83 ASN CB HB3 sing N N 84 ASN CG OD1 doub N N 85 ASN CG ND2 sing N N 86 ASN ND2 HD21 sing N N 87 ASN ND2 HD22 sing N N 88 ASN OXT HXT sing N N 89 ASP N CA sing N N 90 ASP N H sing N N 91 ASP N H2 sing N N 92 ASP CA C sing N N 93 ASP CA CB sing N N 94 ASP CA HA sing N N 95 ASP C O doub N N 96 ASP C OXT sing N N 97 ASP CB CG sing N N 98 ASP CB HB2 sing N N 99 ASP CB HB3 sing N N 100 ASP CG OD1 doub N N 101 ASP CG OD2 sing N N 102 ASP OD2 HD2 sing N N 103 ASP OXT HXT sing N N 104 CYS N CA sing N N 105 CYS N H sing N N 106 CYS N H2 sing N N 107 CYS CA C sing N N 108 CYS CA CB sing N N 109 CYS CA HA sing N N 110 CYS C O doub N N 111 CYS C OXT sing N N 112 CYS CB SG sing N N 113 CYS CB HB2 sing N N 114 CYS CB HB3 sing N N 115 CYS SG HG sing N N 116 CYS OXT HXT sing N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 HIS N CA sing N N 164 HIS N H sing N N 165 HIS N H2 sing N N 166 HIS CA C sing N N 167 HIS CA CB sing N N 168 HIS CA HA sing N N 169 HIS C O doub N N 170 HIS C OXT sing N N 171 HIS CB CG sing N N 172 HIS CB HB2 sing N N 173 HIS CB HB3 sing N N 174 HIS CG ND1 sing Y N 175 HIS CG CD2 doub Y N 176 HIS ND1 CE1 doub Y N 177 HIS ND1 HD1 sing N N 178 HIS CD2 NE2 sing Y N 179 HIS CD2 HD2 sing N N 180 HIS CE1 NE2 sing Y N 181 HIS CE1 HE1 sing N N 182 HIS NE2 HE2 sing N N 183 HIS OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MET N CA sing N N 253 MET N H sing N N 254 MET N H2 sing N N 255 MET CA C sing N N 256 MET CA CB sing N N 257 MET CA HA sing N N 258 MET C O doub N N 259 MET C OXT sing N N 260 MET CB CG sing N N 261 MET CB HB2 sing N N 262 MET CB HB3 sing N N 263 MET CG SD sing N N 264 MET CG HG2 sing N N 265 MET CG HG3 sing N N 266 MET SD CE sing N N 267 MET CE HE1 sing N N 268 MET CE HE2 sing N N 269 MET CE HE3 sing N N 270 MET OXT HXT sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 TFA C1 C2 sing N N 325 TFA C1 O doub N N 326 TFA C1 OXT sing N N 327 TFA C2 F1 sing N N 328 TFA C2 F2 sing N N 329 TFA C2 F3 sing N N 330 TFA OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TYR N CA sing N N 348 TYR N H sing N N 349 TYR N H2 sing N N 350 TYR CA C sing N N 351 TYR CA CB sing N N 352 TYR CA HA sing N N 353 TYR C O doub N N 354 TYR C OXT sing N N 355 TYR CB CG sing N N 356 TYR CB HB2 sing N N 357 TYR CB HB3 sing N N 358 TYR CG CD1 doub Y N 359 TYR CG CD2 sing Y N 360 TYR CD1 CE1 sing Y N 361 TYR CD1 HD1 sing N N 362 TYR CD2 CE2 doub Y N 363 TYR CD2 HD2 sing N N 364 TYR CE1 CZ doub Y N 365 TYR CE1 HE1 sing N N 366 TYR CE2 CZ sing Y N 367 TYR CE2 HE2 sing N N 368 TYR CZ OH sing N N 369 TYR OH HH sing N N 370 TYR OXT HXT sing N N 371 VAL N CA sing N N 372 VAL N H sing N N 373 VAL N H2 sing N N 374 VAL CA C sing N N 375 VAL CA CB sing N N 376 VAL CA HA sing N N 377 VAL C O doub N N 378 VAL C OXT sing N N 379 VAL CB CG1 sing N N 380 VAL CB CG2 sing N N 381 VAL CB HB sing N N 382 VAL CG1 HG11 sing N N 383 VAL CG1 HG12 sing N N 384 VAL CG1 HG13 sing N N 385 VAL CG2 HG21 sing N N 386 VAL CG2 HG22 sing N N 387 VAL CG2 HG23 sing N N 388 VAL OXT HXT sing N N 389 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number U19AI171110 _pdbx_audit_support.ordinal 1 # _pdbx_deposit_group.group_title 'PanDDA analysis group deposition of SARS-CoV-2 NSP3 macrodomain ligand screen - FrankenROCS hits and analogues of AVI-313' _pdbx_deposit_group.group_description 'SARS-CoV-2 NSP3 macrodomain in complex with ligands identified by X-ray diffraction using ALS 8.3.1, SSRL 9-2, and SSRL 12-2' _pdbx_deposit_group.group_type 'changed state' _pdbx_deposit_group.group_id G_1002304 # _atom_sites.entry_id 7HDP _atom_sites.fract_transf_matrix[1][1] 0.011261 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011261 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025305 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL F H N O S # loop_ # loop_ #