data_7HLR # _entry.id 7HLR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7HLR pdb_00007hlr 10.2210/pdb7hlr/pdb WWPDB D_1001407633 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.entry_id 7HLR _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.recvd_initial_deposition_date 2024-11-04 _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _pdbx_contact_author.id 1 _pdbx_contact_author.email knapp@pharmchem.uni-frankfurt.de _pdbx_contact_author.name_first Stefan _pdbx_contact_author.name_last Knapp _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5995-6494 _pdbx_contact_author.name_mi ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Marples, P.' 2 'Fearon, D.' 3 'von Delft, F.' 4 'Knapp, S.' 5 'Kraemer, A.' 6 'Structural Genomics Consortium (SGC)' 7 # _citation.id primary _citation.title 'PanDDA analysis group deposition' _citation.journal_abbrev 'To Be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.identifier_ORCID _citation_author.ordinal primary 'Kim, Y.' ? 1 primary 'Marples, P.' ? 2 primary 'Fearon, D.' ? 3 primary 'von Delft, F.' ? 4 primary 'Knapp, S.' ? 5 primary 'Kraemer, A.' ? 6 primary 'Structural Genomics Consortium (SGC)' ? 7 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'E3 ubiquitin-protein ligase TRIM21' 21596.361 1 2.3.2.27 ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 non-polymer syn '3-fluoro-N-(3-hydroxy-4-methylphenyl)benzamide' 245.249 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 140 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;52 kDa Ro protein,52 kDa ribonucleoprotein autoantigen Ro/SS-A,Ro(SS-A),Sjoegren syndrome type A antigen,SS-A,Tripartite motif-containing protein 21 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHMVHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGV CRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFA GPLRPFFNVGFNYSGGNAAPLKLCPLKM ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHMVHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGV CRDSVQRKGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFA GPLRPFFNVGFNYSGGNAAPLKLCPLKM ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 '3-fluoro-N-(3-hydroxy-4-methylphenyl)benzamide' LKU 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 VAL n 1 10 HIS n 1 11 ILE n 1 12 THR n 1 13 LEU n 1 14 ASP n 1 15 ARG n 1 16 ASN n 1 17 THR n 1 18 ALA n 1 19 ASN n 1 20 SER n 1 21 TRP n 1 22 LEU n 1 23 ILE n 1 24 ILE n 1 25 SER n 1 26 LYS n 1 27 ASP n 1 28 ARG n 1 29 ARG n 1 30 GLN n 1 31 VAL n 1 32 ARG n 1 33 MET n 1 34 GLY n 1 35 ASP n 1 36 THR n 1 37 HIS n 1 38 GLN n 1 39 ASN n 1 40 VAL n 1 41 SER n 1 42 ASP n 1 43 ASN n 1 44 LYS n 1 45 GLU n 1 46 ARG n 1 47 PHE n 1 48 SER n 1 49 ASN n 1 50 TYR n 1 51 PRO n 1 52 MET n 1 53 VAL n 1 54 LEU n 1 55 GLY n 1 56 ALA n 1 57 GLN n 1 58 ARG n 1 59 PHE n 1 60 SER n 1 61 SER n 1 62 GLY n 1 63 LYS n 1 64 MET n 1 65 TYR n 1 66 TRP n 1 67 GLU n 1 68 VAL n 1 69 ASP n 1 70 VAL n 1 71 THR n 1 72 GLN n 1 73 LYS n 1 74 GLU n 1 75 ALA n 1 76 TRP n 1 77 ASP n 1 78 LEU n 1 79 GLY n 1 80 VAL n 1 81 CYS n 1 82 ARG n 1 83 ASP n 1 84 SER n 1 85 VAL n 1 86 GLN n 1 87 ARG n 1 88 LYS n 1 89 GLY n 1 90 GLN n 1 91 PHE n 1 92 SER n 1 93 LEU n 1 94 SER n 1 95 PRO n 1 96 GLU n 1 97 ASN n 1 98 GLY n 1 99 PHE n 1 100 TRP n 1 101 THR n 1 102 ILE n 1 103 TRP n 1 104 LEU n 1 105 TRP n 1 106 GLN n 1 107 ASP n 1 108 SER n 1 109 TYR n 1 110 GLU n 1 111 ALA n 1 112 GLY n 1 113 THR n 1 114 SER n 1 115 PRO n 1 116 GLN n 1 117 THR n 1 118 THR n 1 119 LEU n 1 120 HIS n 1 121 ILE n 1 122 GLN n 1 123 VAL n 1 124 PRO n 1 125 PRO n 1 126 CYS n 1 127 GLN n 1 128 ILE n 1 129 GLY n 1 130 ILE n 1 131 PHE n 1 132 VAL n 1 133 ASP n 1 134 TYR n 1 135 GLU n 1 136 ALA n 1 137 GLY n 1 138 VAL n 1 139 VAL n 1 140 SER n 1 141 PHE n 1 142 TYR n 1 143 ASN n 1 144 ILE n 1 145 THR n 1 146 ASP n 1 147 HIS n 1 148 GLY n 1 149 SER n 1 150 LEU n 1 151 ILE n 1 152 TYR n 1 153 THR n 1 154 PHE n 1 155 SER n 1 156 GLU n 1 157 CYS n 1 158 VAL n 1 159 PHE n 1 160 ALA n 1 161 GLY n 1 162 PRO n 1 163 LEU n 1 164 ARG n 1 165 PRO n 1 166 PHE n 1 167 PHE n 1 168 ASN n 1 169 VAL n 1 170 GLY n 1 171 PHE n 1 172 ASN n 1 173 TYR n 1 174 SER n 1 175 GLY n 1 176 GLY n 1 177 ASN n 1 178 ALA n 1 179 ALA n 1 180 PRO n 1 181 LEU n 1 182 LYS n 1 183 LEU n 1 184 CYS n 1 185 PRO n 1 186 LEU n 1 187 LYS n 1 188 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 188 _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Trim21, Ro52, Ssa1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LKU non-polymer . '3-fluoro-N-(3-hydroxy-4-methylphenyl)benzamide' ? 'C14 H12 F N O2' 245.249 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 7 ? ? ? B . n A 1 2 HIS 2 8 8 HIS HIS B . n A 1 3 HIS 3 9 9 HIS HIS B . n A 1 4 HIS 4 10 10 HIS HIS B . n A 1 5 HIS 5 11 11 HIS HIS B . n A 1 6 HIS 6 12 12 HIS HIS B . n A 1 7 HIS 7 13 13 HIS HIS B . n A 1 8 MET 8 14 14 MET MET B . n A 1 9 VAL 9 15 15 VAL VAL B . n A 1 10 HIS 10 16 16 HIS HIS B . n A 1 11 ILE 11 17 17 ILE ILE B . n A 1 12 THR 12 18 18 THR THR B . n A 1 13 LEU 13 19 19 LEU LEU B . n A 1 14 ASP 14 20 20 ASP ASP B . n A 1 15 ARG 15 21 21 ARG ARG B . n A 1 16 ASN 16 22 22 ASN ASN B . n A 1 17 THR 17 23 23 THR THR B . n A 1 18 ALA 18 24 24 ALA ALA B . n A 1 19 ASN 19 25 25 ASN ASN B . n A 1 20 SER 20 26 26 SER SER B . n A 1 21 TRP 21 27 27 TRP TRP B . n A 1 22 LEU 22 28 28 LEU LEU B . n A 1 23 ILE 23 29 29 ILE ILE B . n A 1 24 ILE 24 30 30 ILE ILE B . n A 1 25 SER 25 31 31 SER SER B . n A 1 26 LYS 26 32 32 LYS LYS B . n A 1 27 ASP 27 33 33 ASP ASP B . n A 1 28 ARG 28 34 34 ARG ARG B . n A 1 29 ARG 29 35 35 ARG ARG B . n A 1 30 GLN 30 36 36 GLN GLN B . n A 1 31 VAL 31 37 37 VAL VAL B . n A 1 32 ARG 32 38 38 ARG ARG B . n A 1 33 MET 33 39 39 MET MET B . n A 1 34 GLY 34 40 40 GLY GLY B . n A 1 35 ASP 35 41 41 ASP ASP B . n A 1 36 THR 36 42 42 THR THR B . n A 1 37 HIS 37 43 43 HIS HIS B . n A 1 38 GLN 38 44 44 GLN GLN B . n A 1 39 ASN 39 45 45 ASN ASN B . n A 1 40 VAL 40 46 46 VAL VAL B . n A 1 41 SER 41 47 47 SER SER B . n A 1 42 ASP 42 48 48 ASP ASP B . n A 1 43 ASN 43 49 49 ASN ASN B . n A 1 44 LYS 44 50 50 LYS LYS B . n A 1 45 GLU 45 51 51 GLU GLU B . n A 1 46 ARG 46 52 52 ARG ARG B . n A 1 47 PHE 47 53 53 PHE PHE B . n A 1 48 SER 48 54 54 SER SER B . n A 1 49 ASN 49 55 55 ASN ASN B . n A 1 50 TYR 50 56 56 TYR TYR B . n A 1 51 PRO 51 57 57 PRO PRO B . n A 1 52 MET 52 58 58 MET MET B . n A 1 53 VAL 53 59 59 VAL VAL B . n A 1 54 LEU 54 60 60 LEU LEU B . n A 1 55 GLY 55 61 61 GLY GLY B . n A 1 56 ALA 56 62 62 ALA ALA B . n A 1 57 GLN 57 63 63 GLN GLN B . n A 1 58 ARG 58 64 64 ARG ARG B . n A 1 59 PHE 59 65 65 PHE PHE B . n A 1 60 SER 60 66 66 SER SER B . n A 1 61 SER 61 67 67 SER SER B . n A 1 62 GLY 62 68 68 GLY GLY B . n A 1 63 LYS 63 69 69 LYS LYS B . n A 1 64 MET 64 70 70 MET MET B . n A 1 65 TYR 65 71 71 TYR TYR B . n A 1 66 TRP 66 72 72 TRP TRP B . n A 1 67 GLU 67 73 73 GLU GLU B . n A 1 68 VAL 68 74 74 VAL VAL B . n A 1 69 ASP 69 75 75 ASP ASP B . n A 1 70 VAL 70 76 76 VAL VAL B . n A 1 71 THR 71 77 77 THR THR B . n A 1 72 GLN 72 78 78 GLN GLN B . n A 1 73 LYS 73 79 79 LYS LYS B . n A 1 74 GLU 74 80 80 GLU GLU B . n A 1 75 ALA 75 81 81 ALA ALA B . n A 1 76 TRP 76 82 82 TRP TRP B . n A 1 77 ASP 77 83 83 ASP ASP B . n A 1 78 LEU 78 84 84 LEU LEU B . n A 1 79 GLY 79 85 85 GLY GLY B . n A 1 80 VAL 80 86 86 VAL VAL B . n A 1 81 CYS 81 87 87 CYS CYS B . n A 1 82 ARG 82 88 88 ARG ARG B . n A 1 83 ASP 83 89 89 ASP ASP B . n A 1 84 SER 84 90 90 SER SER B . n A 1 85 VAL 85 91 91 VAL VAL B . n A 1 86 GLN 86 92 92 GLN GLN B . n A 1 87 ARG 87 93 93 ARG ARG B . n A 1 88 LYS 88 94 94 LYS LYS B . n A 1 89 GLY 89 95 95 GLY GLY B . n A 1 90 GLN 90 96 96 GLN GLN B . n A 1 91 PHE 91 97 97 PHE PHE B . n A 1 92 SER 92 98 98 SER SER B . n A 1 93 LEU 93 99 99 LEU LEU B . n A 1 94 SER 94 100 100 SER SER B . n A 1 95 PRO 95 101 101 PRO PRO B . n A 1 96 GLU 96 102 102 GLU GLU B . n A 1 97 ASN 97 103 103 ASN ASN B . n A 1 98 GLY 98 104 104 GLY GLY B . n A 1 99 PHE 99 105 105 PHE PHE B . n A 1 100 TRP 100 106 106 TRP TRP B . n A 1 101 THR 101 107 107 THR THR B . n A 1 102 ILE 102 108 108 ILE ILE B . n A 1 103 TRP 103 109 109 TRP TRP B . n A 1 104 LEU 104 110 110 LEU LEU B . n A 1 105 TRP 105 111 111 TRP TRP B . n A 1 106 GLN 106 112 112 GLN GLN B . n A 1 107 ASP 107 113 113 ASP ASP B . n A 1 108 SER 108 114 114 SER SER B . n A 1 109 TYR 109 115 115 TYR TYR B . n A 1 110 GLU 110 116 116 GLU GLU B . n A 1 111 ALA 111 117 117 ALA ALA B . n A 1 112 GLY 112 118 118 GLY GLY B . n A 1 113 THR 113 119 119 THR THR B . n A 1 114 SER 114 120 120 SER SER B . n A 1 115 PRO 115 121 121 PRO PRO B . n A 1 116 GLN 116 122 122 GLN GLN B . n A 1 117 THR 117 123 123 THR THR B . n A 1 118 THR 118 124 124 THR THR B . n A 1 119 LEU 119 125 125 LEU LEU B . n A 1 120 HIS 120 126 126 HIS HIS B . n A 1 121 ILE 121 127 127 ILE ILE B . n A 1 122 GLN 122 128 128 GLN GLN B . n A 1 123 VAL 123 129 129 VAL VAL B . n A 1 124 PRO 124 130 130 PRO PRO B . n A 1 125 PRO 125 131 131 PRO PRO B . n A 1 126 CYS 126 132 132 CYS CYS B . n A 1 127 GLN 127 133 133 GLN GLN B . n A 1 128 ILE 128 134 134 ILE ILE B . n A 1 129 GLY 129 135 135 GLY GLY B . n A 1 130 ILE 130 136 136 ILE ILE B . n A 1 131 PHE 131 137 137 PHE PHE B . n A 1 132 VAL 132 138 138 VAL VAL B . n A 1 133 ASP 133 139 139 ASP ASP B . n A 1 134 TYR 134 140 140 TYR TYR B . n A 1 135 GLU 135 141 141 GLU GLU B . n A 1 136 ALA 136 142 142 ALA ALA B . n A 1 137 GLY 137 143 143 GLY GLY B . n A 1 138 VAL 138 144 144 VAL VAL B . n A 1 139 VAL 139 145 145 VAL VAL B . n A 1 140 SER 140 146 146 SER SER B . n A 1 141 PHE 141 147 147 PHE PHE B . n A 1 142 TYR 142 148 148 TYR TYR B . n A 1 143 ASN 143 149 149 ASN ASN B . n A 1 144 ILE 144 150 150 ILE ILE B . n A 1 145 THR 145 151 151 THR THR B . n A 1 146 ASP 146 152 152 ASP ASP B . n A 1 147 HIS 147 153 153 HIS HIS B . n A 1 148 GLY 148 154 154 GLY GLY B . n A 1 149 SER 149 155 155 SER SER B . n A 1 150 LEU 150 156 156 LEU LEU B . n A 1 151 ILE 151 157 157 ILE ILE B . n A 1 152 TYR 152 158 158 TYR TYR B . n A 1 153 THR 153 159 159 THR THR B . n A 1 154 PHE 154 160 160 PHE PHE B . n A 1 155 SER 155 161 161 SER SER B . n A 1 156 GLU 156 162 162 GLU GLU B . n A 1 157 CYS 157 163 163 CYS CYS B . n A 1 158 VAL 158 164 164 VAL VAL B . n A 1 159 PHE 159 165 165 PHE PHE B . n A 1 160 ALA 160 166 166 ALA ALA B . n A 1 161 GLY 161 167 167 GLY GLY B . n A 1 162 PRO 162 168 168 PRO PRO B . n A 1 163 LEU 163 169 169 LEU LEU B . n A 1 164 ARG 164 170 170 ARG ARG B . n A 1 165 PRO 165 171 171 PRO PRO B . n A 1 166 PHE 166 172 172 PHE PHE B . n A 1 167 PHE 167 173 173 PHE PHE B . n A 1 168 ASN 168 174 174 ASN ASN B . n A 1 169 VAL 169 175 175 VAL VAL B . n A 1 170 GLY 170 176 176 GLY GLY B . n A 1 171 PHE 171 177 177 PHE PHE B . n A 1 172 ASN 172 178 178 ASN ASN B . n A 1 173 TYR 173 179 179 TYR TYR B . n A 1 174 SER 174 180 180 SER SER B . n A 1 175 GLY 175 181 181 GLY GLY B . n A 1 176 GLY 176 182 182 GLY GLY B . n A 1 177 ASN 177 183 183 ASN ASN B . n A 1 178 ALA 178 184 184 ALA ALA B . n A 1 179 ALA 179 185 185 ALA ALA B . n A 1 180 PRO 180 186 186 PRO PRO B . n A 1 181 LEU 181 187 187 LEU LEU B . n A 1 182 LYS 182 188 188 LYS LYS B . n A 1 183 LEU 183 189 189 LEU LEU B . n A 1 184 CYS 184 190 190 CYS CYS B . n A 1 185 PRO 185 191 191 PRO PRO B . n A 1 186 LEU 186 192 192 LEU LEU B . n A 1 187 LYS 187 193 ? ? ? B . n A 1 188 MET 188 194 ? ? ? B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id LKU _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id LKU _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 202 EDO EDO B . C 3 LKU 1 202 302 LKU LIG B . D 2 EDO 1 203 305 EDO EDO B . E 4 SO4 1 204 1 SO4 SO4 B . F 5 HOH 1 301 11 HOH HOH B . F 5 HOH 2 302 12 HOH HOH B . F 5 HOH 3 303 26 HOH HOH B . F 5 HOH 4 304 1 HOH HOH B . F 5 HOH 5 305 63 HOH HOH B . F 5 HOH 6 306 2 HOH HOH B . F 5 HOH 7 307 29 HOH HOH B . F 5 HOH 8 308 129 HOH HOH B . F 5 HOH 9 309 184 HOH HOH B . F 5 HOH 10 310 99 HOH HOH B . F 5 HOH 11 311 27 HOH HOH B . F 5 HOH 12 312 40 HOH HOH B . F 5 HOH 13 313 95 HOH HOH B . F 5 HOH 14 314 16 HOH HOH B . F 5 HOH 15 315 3 HOH HOH B . F 5 HOH 16 316 21 HOH HOH B . F 5 HOH 17 317 5 HOH HOH B . F 5 HOH 18 318 33 HOH HOH B . F 5 HOH 19 319 90 HOH HOH B . F 5 HOH 20 320 70 HOH HOH B . F 5 HOH 21 321 10 HOH HOH B . F 5 HOH 22 322 102 HOH HOH B . F 5 HOH 23 323 31 HOH HOH B . F 5 HOH 24 324 25 HOH HOH B . F 5 HOH 25 325 32 HOH HOH B . F 5 HOH 26 326 85 HOH HOH B . F 5 HOH 27 327 11 HOH HOH B . F 5 HOH 28 328 22 HOH HOH B . F 5 HOH 29 329 89 HOH HOH B . F 5 HOH 30 330 36 HOH HOH B . F 5 HOH 31 331 100 HOH HOH B . F 5 HOH 32 332 27 HOH HOH B . F 5 HOH 33 333 34 HOH HOH B . F 5 HOH 34 334 80 HOH HOH B . F 5 HOH 35 335 51 HOH HOH B . F 5 HOH 36 336 267 HOH HOH B . F 5 HOH 37 337 126 HOH HOH B . F 5 HOH 38 338 18 HOH HOH B . F 5 HOH 39 339 39 HOH HOH B . F 5 HOH 40 340 20 HOH HOH B . F 5 HOH 41 341 55 HOH HOH B . F 5 HOH 42 342 133 HOH HOH B . F 5 HOH 43 343 4 HOH HOH B . F 5 HOH 44 344 68 HOH HOH B . F 5 HOH 45 345 66 HOH HOH B . F 5 HOH 46 346 19 HOH HOH B . F 5 HOH 47 347 58 HOH HOH B . F 5 HOH 48 348 214 HOH HOH B . F 5 HOH 49 349 26 HOH HOH B . F 5 HOH 50 350 62 HOH HOH B . F 5 HOH 51 351 7 HOH HOH B . F 5 HOH 52 352 72 HOH HOH B . F 5 HOH 53 353 2 HOH HOH B . F 5 HOH 54 354 172 HOH HOH B . F 5 HOH 55 355 10 HOH HOH B . F 5 HOH 56 356 197 HOH HOH B . F 5 HOH 57 357 13 HOH HOH B . F 5 HOH 58 358 50 HOH HOH B . F 5 HOH 59 359 3 HOH HOH B . F 5 HOH 60 360 29 HOH HOH B . F 5 HOH 61 361 93 HOH HOH B . F 5 HOH 62 362 81 HOH HOH B . F 5 HOH 63 363 211 HOH HOH B . F 5 HOH 64 364 86 HOH HOH B . F 5 HOH 65 365 16 HOH HOH B . F 5 HOH 66 366 6 HOH HOH B . F 5 HOH 67 367 1 HOH HOH B . F 5 HOH 68 368 156 HOH HOH B . F 5 HOH 69 369 15 HOH HOH B . F 5 HOH 70 370 137 HOH HOH B . F 5 HOH 71 371 47 HOH HOH B . F 5 HOH 72 372 71 HOH HOH B . F 5 HOH 73 373 59 HOH HOH B . F 5 HOH 74 374 17 HOH HOH B . F 5 HOH 75 375 4 HOH HOH B . F 5 HOH 76 376 304 HOH HOH B . F 5 HOH 77 377 28 HOH HOH B . F 5 HOH 78 378 43 HOH HOH B . F 5 HOH 79 379 264 HOH HOH B . F 5 HOH 80 380 45 HOH HOH B . F 5 HOH 81 381 76 HOH HOH B . F 5 HOH 82 382 154 HOH HOH B . F 5 HOH 83 383 157 HOH HOH B . F 5 HOH 84 384 61 HOH HOH B . F 5 HOH 85 385 64 HOH HOH B . F 5 HOH 86 386 14 HOH HOH B . F 5 HOH 87 387 32 HOH HOH B . F 5 HOH 88 388 8 HOH HOH B . F 5 HOH 89 389 24 HOH HOH B . F 5 HOH 90 390 33 HOH HOH B . F 5 HOH 91 391 97 HOH HOH B . F 5 HOH 92 392 23 HOH HOH B . F 5 HOH 93 393 303 HOH HOH B . F 5 HOH 94 394 42 HOH HOH B . F 5 HOH 95 395 12 HOH HOH B . F 5 HOH 96 396 46 HOH HOH B . F 5 HOH 97 397 48 HOH HOH B . F 5 HOH 98 398 125 HOH HOH B . F 5 HOH 99 399 56 HOH HOH B . F 5 HOH 100 400 8 HOH HOH B . F 5 HOH 101 401 57 HOH HOH B . F 5 HOH 102 402 25 HOH HOH B . F 5 HOH 103 403 73 HOH HOH B . F 5 HOH 104 404 60 HOH HOH B . F 5 HOH 105 405 49 HOH HOH B . F 5 HOH 106 406 20 HOH HOH B . F 5 HOH 107 407 7 HOH HOH B . F 5 HOH 108 408 103 HOH HOH B . F 5 HOH 109 409 30 HOH HOH B . F 5 HOH 110 410 54 HOH HOH B . F 5 HOH 111 411 140 HOH HOH B . F 5 HOH 112 412 15 HOH HOH B . F 5 HOH 113 413 120 HOH HOH B . F 5 HOH 114 414 53 HOH HOH B . F 5 HOH 115 415 44 HOH HOH B . F 5 HOH 116 416 69 HOH HOH B . F 5 HOH 117 417 257 HOH HOH B . F 5 HOH 118 418 41 HOH HOH B . F 5 HOH 119 419 38 HOH HOH B . F 5 HOH 120 420 5 HOH HOH B . F 5 HOH 121 421 22 HOH HOH B . F 5 HOH 122 422 263 HOH HOH B . F 5 HOH 123 423 19 HOH HOH B . F 5 HOH 124 424 18 HOH HOH B . F 5 HOH 125 425 30 HOH HOH B . F 5 HOH 126 426 112 HOH HOH B . F 5 HOH 127 427 115 HOH HOH B . F 5 HOH 128 428 114 HOH HOH B . F 5 HOH 129 429 266 HOH HOH B . F 5 HOH 130 430 13 HOH HOH B . F 5 HOH 131 431 21 HOH HOH B . F 5 HOH 132 432 23 HOH HOH B . F 5 HOH 133 433 104 HOH HOH B . F 5 HOH 134 434 166 HOH HOH B . F 5 HOH 135 435 205 HOH HOH B . F 5 HOH 136 436 127 HOH HOH B . F 5 HOH 137 437 14 HOH HOH B . F 5 HOH 138 438 270 HOH HOH B . F 5 HOH 139 439 131 HOH HOH B . F 5 HOH 140 440 259 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LEU 192 ? CG ? A LEU 186 CG 2 1 Y 1 B LEU 192 ? CD1 ? A LEU 186 CD1 3 1 Y 1 B LEU 192 ? CD2 ? A LEU 186 CD2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.8.0267 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 Aimless 0.7.7 23/04/21 program 'Phil Evans' ? 'data scaling' http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html ? ? 3 PDB_EXTRACT 3.23 'SEP. 23, 2016' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? program ? ? 'data reduction' ? ? ? 5 REFMAC . ? program ? ? phasing ? ? ? # _cell.entry_id 7HLR _cell.length_a 95.569 _cell.length_b 95.569 _cell.length_c 45.813 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7HLR _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 # _exptl.crystals_number 1 _exptl.entry_id 7HLR _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 49.21 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '4 % PEG 400, 2 M AmmSO4, 0.1 M HEPES pH 8' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.crystal_id 1 _diffrn.ambient_temp_details ? # _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS EIGER2 XE 9M' _diffrn_detector.pdbx_collection_date 2024-05-24 _diffrn_detector.diffrn_id 1 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92124 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.pdbx_wavelength_list 0.92124 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 7HLR _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 67.580 _reflns.d_resolution_high 1.340 _reflns.number_obs 46080 _reflns.number_all ? _reflns.percent_possible_obs 99.000 _reflns.pdbx_Rmerge_I_obs 0.114 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.100 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.900 _reflns.pdbx_Rrim_I_all 0.119 _reflns.pdbx_Rpim_I_all 0.033 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all 546051 _reflns.pdbx_scaling_rejects 0 _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 1.340 1.360 ? 11679 1922 ? 2.010 ? ? ? 6.100 ? 0.600 ? ? ? ? ? ? 84.900 2.203 0.867 0.320 1 2 7.340 67.580 ? 3464 308 ? 0.094 ? ? ? 11.200 ? 51.400 ? ? ? ? ? ? 99.900 0.099 0.032 0.969 # _refine.entry_id 7HLR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.3400 _refine.ls_d_res_low 67.5800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.2100 _refine.ls_number_reflns_obs 43514 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1806 _refine.ls_R_factor_R_work 0.1796 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1997 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 2199 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.5890 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.3200 _refine.aniso_B[2][2] 0.3200 _refine.aniso_B[3][3] -0.6400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9700 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0570 _refine.pdbx_overall_ESU_R_Free 0.0580 _refine.overall_SU_ML 0.0500 _refine.overall_SU_B 1.3280 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 71.860 _refine.B_iso_min 9.720 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.3400 _refine_hist.d_res_low 67.5800 _refine_hist.pdbx_number_atoms_ligand 31 _refine_hist.number_atoms_solvent 140 _refine_hist.number_atoms_total 1664 _refine_hist.pdbx_number_residues_total 185 _refine_hist.pdbx_B_iso_mean_ligand 32.13 _refine_hist.pdbx_B_iso_mean_solvent 28.06 _refine_hist.pdbx_number_atoms_protein 1493 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 2053 0.012 0.013 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1626 0.001 0.015 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2563 1.772 1.639 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3750 1.466 1.580 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 241 7.307 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 110 29.076 21.455 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 291 12.112 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15 20.867 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 220 0.086 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2308 0.011 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 514 0.003 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 975 1.427 1.600 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 965 1.413 1.579 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1153 2.188 2.372 ? ? # _refine_ls_shell.d_res_high 1.3400 _refine_ls_shell.d_res_low 1.3750 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 77.6900 _refine_ls_shell.number_reflns_R_work 2546 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3370 _refine_ls_shell.R_factor_R_free 0.3950 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2654 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 7HLR _struct.title 'PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z1430613393' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 7HLR _struct_keywords.text 'SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, TRIM21, LIGASE' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RO52_MOUSE _struct_ref.pdbx_db_accession Q62191 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGVCRDSVQRK GQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFAGPLRPFFN VGFNYSGGNAAPLKLCPLKM ; _struct_ref.pdbx_align_begin 291 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7HLR _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 188 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q62191 _struct_ref_seq.db_align_beg 291 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 470 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 194 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7HLR MET B 1 ? UNP Q62191 ? ? 'initiating methionine' 7 1 1 7HLR HIS B 2 ? UNP Q62191 ? ? 'expression tag' 8 2 1 7HLR HIS B 3 ? UNP Q62191 ? ? 'expression tag' 9 3 1 7HLR HIS B 4 ? UNP Q62191 ? ? 'expression tag' 10 4 1 7HLR HIS B 5 ? UNP Q62191 ? ? 'expression tag' 11 5 1 7HLR HIS B 6 ? UNP Q62191 ? ? 'expression tag' 12 6 1 7HLR HIS B 7 ? UNP Q62191 ? ? 'expression tag' 13 7 1 7HLR MET B 8 ? UNP Q62191 ? ? 'expression tag' 14 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 4 ? MET A 8 ? HIS B 10 MET B 14 5 ? 5 HELX_P HELX_P2 AA2 ASP A 14 ? ALA A 18 ? ASP B 20 ALA B 24 5 ? 5 HELX_P HELX_P3 AA3 SER A 94 ? ASN A 97 ? SER B 100 ASN B 103 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 114 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 120 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 115 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 121 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 22 ? ILE A 24 ? LEU B 28 ILE B 30 AA1 2 GLN A 30 ? MET A 33 ? GLN B 36 MET B 39 AA1 3 LEU A 181 ? LEU A 183 ? LEU B 187 LEU B 189 AA1 4 LYS A 63 ? ASP A 69 ? LYS B 69 ASP B 75 AA1 5 GLN A 127 ? ASP A 133 ? GLN B 133 ASP B 139 AA1 6 VAL A 138 ? ASN A 143 ? VAL B 144 ASN B 149 AA1 7 SER A 149 ? PHE A 154 ? SER B 155 PHE B 160 AA2 1 MET A 52 ? LEU A 54 ? MET B 58 LEU B 60 AA2 2 LEU A 163 ? ASN A 168 ? LEU B 169 ASN B 174 AA2 3 TRP A 76 ? ARG A 82 ? TRP B 82 ARG B 88 AA2 4 PHE A 99 ? TRP A 105 ? PHE B 105 TRP B 111 AA2 5 SER A 108 ? ALA A 111 ? SER B 114 ALA B 117 AA2 6 THR A 117 ? THR A 118 ? THR B 123 THR B 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 23 ? N ILE B 29 O ARG A 32 ? O ARG B 38 AA1 2 3 N VAL A 31 ? N VAL B 37 O LEU A 181 ? O LEU B 187 AA1 3 4 O LYS A 182 ? O LYS B 188 N ASP A 69 ? N ASP B 75 AA1 4 5 N TRP A 66 ? N TRP B 72 O ILE A 130 ? O ILE B 136 AA1 5 6 N PHE A 131 ? N PHE B 137 O SER A 140 ? O SER B 146 AA1 6 7 N PHE A 141 ? N PHE B 147 O ILE A 151 ? O ILE B 157 AA2 1 2 N VAL A 53 ? N VAL B 59 O PHE A 167 ? O PHE B 173 AA2 2 3 O ARG A 164 ? O ARG B 170 N CYS A 81 ? N CYS B 87 AA2 3 4 N VAL A 80 ? N VAL B 86 O TRP A 100 ? O TRP B 106 AA2 4 5 N TRP A 105 ? N TRP B 111 O SER A 108 ? O SER B 114 AA2 5 6 N ALA A 111 ? N ALA B 117 O THR A 117 ? O THR B 123 # _pdbx_entry_details.entry_id 7HLR _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 64 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CD _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 64 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NE _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 64 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 126.38 _pdbx_validate_rmsd_angle.angle_target_value 111.80 _pdbx_validate_rmsd_angle.angle_deviation 14.58 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN B 45 ? ? 70.11 34.49 2 1 ASP B 152 ? ? -99.75 53.15 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 428 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 7 ? A MET 1 2 1 Y 1 B LYS 193 ? A LYS 187 3 1 Y 1 B MET 194 ? A MET 188 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 EDO C1 C N N 88 EDO O1 O N N 89 EDO C2 C N N 90 EDO O2 O N N 91 EDO H11 H N N 92 EDO H12 H N N 93 EDO HO1 H N N 94 EDO H21 H N N 95 EDO H22 H N N 96 EDO HO2 H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LKU N1 N N N 215 LKU C4 C Y N 216 LKU C5 C Y N 217 LKU C6 C N N 218 LKU C7 C Y N 219 LKU C8 C Y N 220 LKU C10 C Y N 221 LKU C13 C Y N 222 LKU C1 C N N 223 LKU C2 C Y N 224 LKU C3 C Y N 225 LKU O1 O N N 226 LKU C9 C Y N 227 LKU C11 C Y N 228 LKU F1 F N N 229 LKU C12 C Y N 230 LKU C14 C Y N 231 LKU O2 O N N 232 LKU H6 H N N 233 LKU H5 H N N 234 LKU H7 H N N 235 LKU H9 H N N 236 LKU H11 H N N 237 LKU H1 H N N 238 LKU H2 H N N 239 LKU H3 H N N 240 LKU H4 H N N 241 LKU H8 H N N 242 LKU H10 H N N 243 LKU H12 H N N 244 LYS N N N N 245 LYS CA C N S 246 LYS C C N N 247 LYS O O N N 248 LYS CB C N N 249 LYS CG C N N 250 LYS CD C N N 251 LYS CE C N N 252 LYS NZ N N N 253 LYS OXT O N N 254 LYS H H N N 255 LYS H2 H N N 256 LYS HA H N N 257 LYS HB2 H N N 258 LYS HB3 H N N 259 LYS HG2 H N N 260 LYS HG3 H N N 261 LYS HD2 H N N 262 LYS HD3 H N N 263 LYS HE2 H N N 264 LYS HE3 H N N 265 LYS HZ1 H N N 266 LYS HZ2 H N N 267 LYS HZ3 H N N 268 LYS HXT H N N 269 MET N N N N 270 MET CA C N S 271 MET C C N N 272 MET O O N N 273 MET CB C N N 274 MET CG C N N 275 MET SD S N N 276 MET CE C N N 277 MET OXT O N N 278 MET H H N N 279 MET H2 H N N 280 MET HA H N N 281 MET HB2 H N N 282 MET HB3 H N N 283 MET HG2 H N N 284 MET HG3 H N N 285 MET HE1 H N N 286 MET HE2 H N N 287 MET HE3 H N N 288 MET HXT H N N 289 PHE N N N N 290 PHE CA C N S 291 PHE C C N N 292 PHE O O N N 293 PHE CB C N N 294 PHE CG C Y N 295 PHE CD1 C Y N 296 PHE CD2 C Y N 297 PHE CE1 C Y N 298 PHE CE2 C Y N 299 PHE CZ C Y N 300 PHE OXT O N N 301 PHE H H N N 302 PHE H2 H N N 303 PHE HA H N N 304 PHE HB2 H N N 305 PHE HB3 H N N 306 PHE HD1 H N N 307 PHE HD2 H N N 308 PHE HE1 H N N 309 PHE HE2 H N N 310 PHE HZ H N N 311 PHE HXT H N N 312 PRO N N N N 313 PRO CA C N S 314 PRO C C N N 315 PRO O O N N 316 PRO CB C N N 317 PRO CG C N N 318 PRO CD C N N 319 PRO OXT O N N 320 PRO H H N N 321 PRO HA H N N 322 PRO HB2 H N N 323 PRO HB3 H N N 324 PRO HG2 H N N 325 PRO HG3 H N N 326 PRO HD2 H N N 327 PRO HD3 H N N 328 PRO HXT H N N 329 SER N N N N 330 SER CA C N S 331 SER C C N N 332 SER O O N N 333 SER CB C N N 334 SER OG O N N 335 SER OXT O N N 336 SER H H N N 337 SER H2 H N N 338 SER HA H N N 339 SER HB2 H N N 340 SER HB3 H N N 341 SER HG H N N 342 SER HXT H N N 343 SO4 S S N N 344 SO4 O1 O N N 345 SO4 O2 O N N 346 SO4 O3 O N N 347 SO4 O4 O N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TYR N N N N 393 TYR CA C N S 394 TYR C C N N 395 TYR O O N N 396 TYR CB C N N 397 TYR CG C Y N 398 TYR CD1 C Y N 399 TYR CD2 C Y N 400 TYR CE1 C Y N 401 TYR CE2 C Y N 402 TYR CZ C Y N 403 TYR OH O N N 404 TYR OXT O N N 405 TYR H H N N 406 TYR H2 H N N 407 TYR HA H N N 408 TYR HB2 H N N 409 TYR HB3 H N N 410 TYR HD1 H N N 411 TYR HD2 H N N 412 TYR HE1 H N N 413 TYR HE2 H N N 414 TYR HH H N N 415 TYR HXT H N N 416 VAL N N N N 417 VAL CA C N S 418 VAL C C N N 419 VAL O O N N 420 VAL CB C N N 421 VAL CG1 C N N 422 VAL CG2 C N N 423 VAL OXT O N N 424 VAL H H N N 425 VAL H2 H N N 426 VAL HA H N N 427 VAL HB H N N 428 VAL HG11 H N N 429 VAL HG12 H N N 430 VAL HG13 H N N 431 VAL HG21 H N N 432 VAL HG22 H N N 433 VAL HG23 H N N 434 VAL HXT H N N 435 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 EDO C1 O1 sing N N 83 EDO C1 C2 sing N N 84 EDO C1 H11 sing N N 85 EDO C1 H12 sing N N 86 EDO O1 HO1 sing N N 87 EDO C2 O2 sing N N 88 EDO C2 H21 sing N N 89 EDO C2 H22 sing N N 90 EDO O2 HO2 sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LKU C1 C2 sing N N 203 LKU C2 C3 doub Y N 204 LKU C3 C4 sing Y N 205 LKU C4 C5 doub Y N 206 LKU C5 N1 sing N N 207 LKU N1 C6 sing N N 208 LKU C6 O1 doub N N 209 LKU C6 C7 sing N N 210 LKU C7 C8 doub Y N 211 LKU C8 C9 sing Y N 212 LKU C9 C10 doub Y N 213 LKU C10 C11 sing Y N 214 LKU C11 F1 sing N N 215 LKU C11 C12 doub Y N 216 LKU C5 C13 sing Y N 217 LKU C13 C14 doub Y N 218 LKU C14 O2 sing N N 219 LKU C2 C14 sing Y N 220 LKU C7 C12 sing Y N 221 LKU N1 H6 sing N N 222 LKU C4 H5 sing N N 223 LKU C8 H7 sing N N 224 LKU C10 H9 sing N N 225 LKU C13 H11 sing N N 226 LKU C1 H1 sing N N 227 LKU C1 H2 sing N N 228 LKU C1 H3 sing N N 229 LKU C3 H4 sing N N 230 LKU C9 H8 sing N N 231 LKU C12 H10 sing N N 232 LKU O2 H12 sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 SO4 S O1 doub N N 330 SO4 S O2 doub N N 331 SO4 S O3 sing N N 332 SO4 S O4 sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TRP N CA sing N N 350 TRP N H sing N N 351 TRP N H2 sing N N 352 TRP CA C sing N N 353 TRP CA CB sing N N 354 TRP CA HA sing N N 355 TRP C O doub N N 356 TRP C OXT sing N N 357 TRP CB CG sing N N 358 TRP CB HB2 sing N N 359 TRP CB HB3 sing N N 360 TRP CG CD1 doub Y N 361 TRP CG CD2 sing Y N 362 TRP CD1 NE1 sing Y N 363 TRP CD1 HD1 sing N N 364 TRP CD2 CE2 doub Y N 365 TRP CD2 CE3 sing Y N 366 TRP NE1 CE2 sing Y N 367 TRP NE1 HE1 sing N N 368 TRP CE2 CZ2 sing Y N 369 TRP CE3 CZ3 doub Y N 370 TRP CE3 HE3 sing N N 371 TRP CZ2 CH2 doub Y N 372 TRP CZ2 HZ2 sing N N 373 TRP CZ3 CH2 sing Y N 374 TRP CZ3 HZ3 sing N N 375 TRP CH2 HH2 sing N N 376 TRP OXT HXT sing N N 377 TYR N CA sing N N 378 TYR N H sing N N 379 TYR N H2 sing N N 380 TYR CA C sing N N 381 TYR CA CB sing N N 382 TYR CA HA sing N N 383 TYR C O doub N N 384 TYR C OXT sing N N 385 TYR CB CG sing N N 386 TYR CB HB2 sing N N 387 TYR CB HB3 sing N N 388 TYR CG CD1 doub Y N 389 TYR CG CD2 sing Y N 390 TYR CD1 CE1 sing Y N 391 TYR CD1 HD1 sing N N 392 TYR CD2 CE2 doub Y N 393 TYR CD2 HD2 sing N N 394 TYR CE1 CZ doub Y N 395 TYR CE1 HE1 sing N N 396 TYR CE2 CZ sing Y N 397 TYR CE2 HE2 sing N N 398 TYR CZ OH sing N N 399 TYR OH HH sing N N 400 TYR OXT HXT sing N N 401 VAL N CA sing N N 402 VAL N H sing N N 403 VAL N H2 sing N N 404 VAL CA C sing N N 405 VAL CA CB sing N N 406 VAL CA HA sing N N 407 VAL C O doub N N 408 VAL C OXT sing N N 409 VAL CB CG1 sing N N 410 VAL CB CG2 sing N N 411 VAL CB HB sing N N 412 VAL CG1 HG11 sing N N 413 VAL CG1 HG12 sing N N 414 VAL CG1 HG13 sing N N 415 VAL CG2 HG21 sing N N 416 VAL CG2 HG22 sing N N 417 VAL CG2 HG23 sing N N 418 VAL OXT HXT sing N N 419 # _pdbx_audit_support.ordinal 1 _pdbx_audit_support.funding_organization 'European Union (EU)' _pdbx_audit_support.grant_number 875510 _pdbx_audit_support.country 'European Union' # _pdbx_deposit_group.group_id G_1002320 _pdbx_deposit_group.group_description ;PRYSPRY domain of murine TRIM21 screened against the DSI-poised Fragment Library by X-ray Crystallography at the XChem facility of Diamon Light Source ; _pdbx_deposit_group.group_title 'PanDDA analysis group deposition' _pdbx_deposit_group.group_type 'changed state' # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VOK _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7HLR _atom_sites.fract_transf_matrix[1][1] 0.010464 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010464 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021828 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F N O S # loop_