HEADER TRANSFERASE/DNA 19-APR-96 7ICF TITLE DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE TITLE 2 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) (FOUR- TITLE 3 DAY SOAK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'); COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)); COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, COMPLEX (NUCLEOTIDYLTRANSFERASE-DNA, KEYWDS 3 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 4 02-AUG-23 7ICF 1 REMARK LINK REVDAT 3 24-FEB-09 7ICF 1 VERSN REVDAT 2 01-APR-03 7ICF 1 JRNL REVDAT 1 15-NOV-96 7ICF 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT JRNL TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE JRNL TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA JRNL REF BIOCHEMISTRY V. 35 12762 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841119 JRNL DOI 10.1021/BI9529566 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE- PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 8937 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1580 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2623 REMARK 3 NUCLEIC ACID ATOMS : 248 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.021 ; 0.020 ; 2950 REMARK 3 BOND ANGLES (DEGREES) : 3.100 ; 3.000 ; 3981 REMARK 3 TORSION ANGLES (DEGREES) : 23.700; NULL ; 1776 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.012 ; 0.020 ; 73 REMARK 3 GENERAL PLANES (A) : 0.006 ; 0.020 ; 393 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 6.200 ; 6.000 ; 2950 REMARK 3 NON-BONDED CONTACTS (A) : 0.025 ; 0.020 ; 159 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 677.9 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ICF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000179907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-95 REMARK 200 TEMPERATURE (KELVIN) : 298.00 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8937 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 9ICK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A COCRYSTAL OF HUMAN DNA POLYMERASE BETA REMARK 280 COMPLEXED WITH 6 BASE PAIRS OF DNA (SEE ENTRY 9ICW AND REFERENCE REMARK 280 1) HAD BEEN SOAKED IN THE FOLLOWING SOLUTION FOR 4 DAYS: PEG REMARK 280 3350, 16% MES, 100 MILLIMOLAR, PH 6.5 NACL, 150 MILLIMOLAR CDCL2, REMARK 280 0.1 MILLIMOLAR SEE REFERENCE 2 FOR DETAILS CONCERNING REMARK 280 EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR THIS REMARK 280 STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 88.58950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.58950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A POSSIBLE PHYSIOLOGICAL SUBSTRATE FOR POL BETA IS A DNA REMARK 400 GAP, WHERE THE LENGTH OF THE GAP CAN RANGE FROM ONE TO SIX REMARK 400 NUCLEOTIDES, AND THE DOWNSTREAM END OF THE DNA GAP IS REMARK 400 5'-PHOSPHORYLATED. IN ORDER TO CREATE VARIOUS GAPPED-DNA REMARK 400 SUBSTRATES FOR USE IN POL BETA-DNA CO-CRYSTALLIZATION REMARK 400 ATTEMPTS, THE AUTHORS HAD TO ANNEAL THREE DIFFERENT REMARK 400 OLIGONUCLEOTIDES TOGETHER PRIOR TO CRYSTALLIZATION: REMARK 400 (1) A RELATIVELY LONG (14 TO 20 MER) OLIGONUCLEOTIDE THAT REMARK 400 WAS TO SERVE AS THE TEMPLATE, (2) ONE SHORTER (5 OR 6 MER) REMARK 400 OLIGONUCLEOTIDE THAT WAS TO SERVE AS THE PRIMER, AND (3) REMARK 400 ANOTHER SHORTER (4 TO 10 MER) OLIGONUCLEOTIDE THAT WAS REMARK 400 5'-PHOSPHORYLATED AND WAS TO SERVE AS THE DOWNSTREAM REMARK 400 OLIGONUCLEOTIDE. DNA SEQUENCES CORRESPONDING TO THE REMARK 400 TEMPLATE, THE PRIMER, AND THE DOWNSTREAM OLIGONUCLEOTIDE REMARK 400 FOR THE CRYSTAL STRUCTURE PRESENTED HERE ARE: REMARK 400 5'-CATCTGTTGTAAGCGCCG-3' (18-MER), 5'-CGGCGC-3' (6-MER), REMARK 400 AND 5'-PO4-CAGATG-3' (6-MER), RESPECTIVELY, WHERE "5'-PO4" REMARK 400 INDICATES THAT THE 5' TERMINUS OF THIS OLIGONUCLEOTIDE IS REMARK 400 5'-PHOSPHORYLATED. HOWEVER, AN UNEXPECTED POL BETA-DNA REMARK 400 COMPLEX RESULTED FROM THE CO-CRYSTALLIZATION ATTEMPTS SO REMARK 400 THAT WHAT WAS ORIGINALLY INTENDED TO BE THE REMARK 400 5'-PHOSPHORYLATED DOWNSTREAM OLIGONUCLEOTIDE IS BOUND REMARK 400 WHERE THE PRIMER STRAND WAS EXPECTED TO BIND (SEE REFERENCE REMARK 400 1). IN ADDITION, A MAJORITY OF THE GAPPED-DNA SUBSTRATE REMARK 400 (THAT IS, SIX BASE PAIRS OF TEMPLATE-PRIMER TETHERED TO A REMARK 400 FLEXIBLE, SINGLE-STRANDED DNA GAP) IS TOO DISORDERED TO BE REMARK 400 OBSERVABLE IN THE CRYSTAL STRUCTURE, ALTHOUGH IT IS REMARK 400 NEVERTHELESS THOUGHT TO BE PRESENT IN THE CRYSTAL LATTICE REMARK 400 (SEE REFERENCE 1). THE END RESULT IS THAT, ALTHOUGH THE REMARK 400 AFOREMENTIONED TEMPLATE IS STILL REFERRED TO AS THE REMARK 400 TEMPLATE IN THE STRUCTURES PRESENTED HERE, THE REMARK 400 AFOREMENTIONED "DOWNSTREAM OLIGONUCLEOTIDE" IS NOW CALLED REMARK 400 THE "PRIMER" -- BY ANALOGY WITH PREVIOUSLY REPORTED POL REMARK 400 BETA-DNA-DDCTP TERNARY COMPLEX STRUCTURES (SEE ENTRIES REMARK 400 2BPF AND 2BPG AND REFERENCE 8). ONLY THE DNA NUCLEOTIDES REMARK 400 THAT WERE VISIBLE IN THE STRUCTURE ARE INCLUDED IN THE REMARK 400 SEQRES SECTION BELOW. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT T 8 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DT T 8 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT T 8 C7 C6 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLU A 9 REMARK 475 ASP A 246 REMARK 475 GLU A 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 83 CB GLU A 117 3558 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT T 4 O3' DT T 4 C3' -0.038 REMARK 500 DT T 4 N1 DT T 4 C2 0.059 REMARK 500 DT T 4 C4 DT T 4 C5 0.059 REMARK 500 DC T 5 O3' DC T 5 C3' -0.045 REMARK 500 DT T 6 C1' DT T 6 N1 -0.136 REMARK 500 DG T 7 C1' DG T 7 N9 -0.115 REMARK 500 DG T 7 N3 DG T 7 C4 -0.067 REMARK 500 DG T 7 N9 DG T 7 C4 -0.077 REMARK 500 DC P 1 C1' DC P 1 N1 0.092 REMARK 500 DA P 4 O3' DA P 4 C3' -0.096 REMARK 500 DT P 5 C5' DT P 5 C4' 0.047 REMARK 500 DT P 5 C1' DT P 5 N1 0.103 REMARK 500 DT P 5 N1 DT P 5 C2 0.051 REMARK 500 DT P 5 C4 DT P 5 C5 0.054 REMARK 500 GLU A 21 CD GLU A 21 OE1 0.070 REMARK 500 GLU A 26 CD GLU A 26 OE1 0.076 REMARK 500 GLU A 58 CD GLU A 58 OE1 0.093 REMARK 500 GLU A 71 CD GLU A 71 OE1 0.077 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.082 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.074 REMARK 500 GLU A 129 CD GLU A 129 OE1 0.080 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.073 REMARK 500 GLU A 186 CD GLU A 186 OE1 0.071 REMARK 500 GLU A 203 CD GLU A 203 OE1 0.067 REMARK 500 GLU A 316 CD GLU A 316 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA T 3 C8 - N9 - C1' ANGL. DEV. = 11.2 DEGREES REMARK 500 DA T 3 C4 - N9 - C1' ANGL. DEV. = -11.7 DEGREES REMARK 500 DT T 4 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT T 4 O4' - C1' - N1 ANGL. DEV. = 6.4 DEGREES REMARK 500 DT T 4 N3 - C2 - O2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT T 4 C6 - C5 - C7 ANGL. DEV. = -3.7 DEGREES REMARK 500 DT T 4 C6 - N1 - C1' ANGL. DEV. = -25.6 DEGREES REMARK 500 DT T 4 C2 - N1 - C1' ANGL. DEV. = 25.1 DEGREES REMARK 500 DC T 5 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC T 5 C6 - N1 - C1' ANGL. DEV. = -12.7 DEGREES REMARK 500 DC T 5 C2 - N1 - C1' ANGL. DEV. = 12.2 DEGREES REMARK 500 DT T 6 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT T 6 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT T 6 C6 - N1 - C1' ANGL. DEV. = -14.6 DEGREES REMARK 500 DT T 6 C2 - N1 - C1' ANGL. DEV. = 11.7 DEGREES REMARK 500 DG T 7 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG T 7 N9 - C1' - C2' ANGL. DEV. = -11.6 DEGREES REMARK 500 DG T 7 C8 - N9 - C4 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG T 7 C4 - N9 - C1' ANGL. DEV. = -9.6 DEGREES REMARK 500 DA P 2 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DA P 2 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 DA P 2 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 DA P 2 C3' - O3' - P ANGL. DEV. = 8.9 DEGREES REMARK 500 DG P 3 C8 - N9 - C1' ANGL. DEV. = 19.4 DEGREES REMARK 500 DG P 3 C4 - N9 - C1' ANGL. DEV. = -17.8 DEGREES REMARK 500 DA P 4 P - O5' - C5' ANGL. DEV. = 9.7 DEGREES REMARK 500 DA P 4 C8 - N9 - C1' ANGL. DEV. = 15.8 DEGREES REMARK 500 DA P 4 C4 - N9 - C1' ANGL. DEV. = -15.7 DEGREES REMARK 500 DT P 5 C5' - C4' - O4' ANGL. DEV. = 7.6 DEGREES REMARK 500 DT P 5 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT P 5 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT P 5 N3 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT P 5 C4 - C5 - C7 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT P 5 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT P 5 C6 - N1 - C1' ANGL. DEV. = -31.2 DEGREES REMARK 500 DT P 5 C2 - N1 - C1' ANGL. DEV. = 31.1 DEGREES REMARK 500 DG P 6 P - O5' - C5' ANGL. DEV. = -11.8 DEGREES REMARK 500 DG P 6 C5' - C4' - O4' ANGL. DEV. = 8.0 DEGREES REMARK 500 DG P 6 C8 - N9 - C1' ANGL. DEV. = 11.9 DEGREES REMARK 500 DG P 6 C4 - N9 - C1' ANGL. DEV. = -12.4 DEGREES REMARK 500 MET A 18 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 TYR A 36 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 PRO A 50 C - N - CA ANGL. DEV. = 12.4 DEGREES REMARK 500 PRO A 50 C - N - CD ANGL. DEV. = -15.6 DEGREES REMARK 500 HIS A 51 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP A 74 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 ASP A 74 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 GLU A 86 N - CA - CB ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP A 91 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 84 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 -12.80 -166.34 REMARK 500 ALA A 32 56.61 -35.06 REMARK 500 LYS A 61 -7.54 -54.53 REMARK 500 ASP A 91 101.59 -34.41 REMARK 500 ARG A 112 -72.86 -69.85 REMARK 500 LYS A 113 -36.02 -34.48 REMARK 500 ASP A 145 -37.53 -29.67 REMARK 500 ASP A 170 125.59 -172.82 REMARK 500 CYS A 178 -156.93 -84.69 REMARK 500 ALA A 185 109.06 23.42 REMARK 500 HIS A 197 135.98 179.08 REMARK 500 SER A 202 -53.69 -17.75 REMARK 500 LYS A 206 170.18 27.36 REMARK 500 GLN A 207 96.71 178.35 REMARK 500 SER A 229 143.65 -178.88 REMARK 500 THR A 233 -16.94 -150.05 REMARK 500 LYS A 244 -121.90 -43.12 REMARK 500 ASP A 246 110.16 -18.14 REMARK 500 GLU A 247 -29.53 172.71 REMARK 500 LYS A 262 -17.09 -40.57 REMARK 500 GLN A 264 17.11 -149.95 REMARK 500 LYS A 289 -3.06 -46.74 REMARK 500 THR A 304 1.25 -45.51 REMARK 500 GLU A 309 85.30 102.88 REMARK 500 PRO A 310 121.36 -34.58 REMARK 500 GLN A 324 90.81 51.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 342 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG P 3 OP2 REMARK 620 2 LEU A 62 O 117.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 341 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG P 6 OP1 REMARK 620 2 THR A 101 O 164.1 REMARK 620 3 VAL A 103 O 83.7 80.8 REMARK 620 4 ILE A 106 O 97.1 84.5 82.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 343 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 51 ND1 REMARK 620 2 HIS A 134 NE2 78.9 REMARK 620 3 HOH A 544 O 117.3 95.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CACL2 REMARK 900 RELATED ID: 7ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF CDCL2 REMARK 900 RELATED ID: 7ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF COCL2 REMARK 900 RELATED ID: 7ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF MGCL2 REMARK 900 RELATED ID: 7ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (1.0 MILLIMOLAR) REMARK 900 RELATED ID: 7ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 7ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ZNCL2 (0.01 MILLIMOLAR) REMARK 900 RELATED ID: 7ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 REMARK 900 RELATED ID: 7ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ZNCL2 AND MGCL2 REMARK 900 RELATED ID: 7ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CDCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 7ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (0.1 MILLIMOLAR) AND REMARK 900 IN THE ABSENCE OF NACL REMARK 900 RELATED ID: 8ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CACL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 8ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 8ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CDCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 8ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (10 MILLIMOLAR) AND REMARK 900 MGCL2 (50 MILLIMOLAR) REMARK 900 RELATED ID: 8ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 8ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MGCL2 REMARK 900 (5 MILLIMOLAR), AND MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 NICL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR), MNCL2 REMARK 900 (5 MILLIMOLAR), AND AMMONIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 8ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF ATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF AZT-TP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (0.1 MILLIMOLAR) REMARK 900 AND MNCL2 (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DDATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 8ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + THYMIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DTTP AND MNCL2 REMARK 900 RELATED ID: 8ICZ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF OF DATP (1 MILLIMOLAR), REMARK 900 MNCL2 (5 MILLIMOLAR), AND LITHIUM SULFATE (75 MILLIMOLAR) REMARK 900 RELATED ID: 9ICA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -O-(1-THIOTRIPHOSPHATE), SOAKED IN THE PRESENCE OF DATP(ALPHA)S AND REMARK 900 MNCL2 REMARK 900 RELATED ID: 9ICB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND COCL2 REMARK 900 RELATED ID: 9ICC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 REMARK 900 RELATED ID: 9ICE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 CUCL2 (0.1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 ZNCL2 (1 MILLIMOLAR) REMARK 900 RELATED ID: 9ICJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA REMARK 900 RELATED ID: 9ICK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF ARTIFICIAL MOTHER LIQUOR REMARK 900 RELATED ID: 9ICL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF PYROPHOSPHATE AND MNCL2 REMARK 900 RELATED ID: 9ICM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) REMARK 900 RELATED ID: 9ICN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MGCL2 REMARK 900 RELATED ID: 9ICO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF DTTP AND MGCL2 REMARK 900 RELATED ID: 9ICP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) REMARK 900 AND MGCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYCYTIDINE-5'- REMARK 900 TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DCTP AND MNCL2 REMARK 900 RELATED ID: 9ICS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2',3'- REMARK 900 DIDEOXYCYTIDINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DDCTP REMARK 900 AND MNCL2 REMARK 900 RELATED ID: 9ICT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYGUANOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DGTP AND MNCL2 REMARK 900 RELATED ID: 9ICU RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DTTP (1 MILLIMOLAR) AND REMARK 900 MNCL2 (5 MILLIMOLAR) REMARK 900 RELATED ID: 9ICV RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5' REMARK 900 -TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND ZNCL2 REMARK 900 RELATED ID: 9ICW RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA; NATIVE STRUCTURE REMARK 900 RELATED ID: 9ICX RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE REMARK 900 PAIRS OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 9ICY RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS REMARK 900 OF DNA (NON GAPPED DNA ONLY) REMARK 900 RELATED ID: 1ZQA RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) AT PH REMARK 900 7.5 REMARK 900 RELATED ID: 1ZQB RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQC RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQD RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQE RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CRCL3 (SATURATED SOLUTION) REMARK 900 RELATED ID: 1ZQF RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQG RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 6.5 REMARK 900 RELATED ID: 1ZQH RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF A SODIUM-FREE ARTIFICIAL REMARK 900 MOTHER LIQUOR AT PH 7.5 REMARK 900 RELATED ID: 1ZQI RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQJ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQK RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 MGCL2 (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQL RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 MGCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQM RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQN RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF BACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQO RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF CACL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQP RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF KCL (75 MILLIMOLAR) AND REMARK 900 NACL (75 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQQ RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF MNCL2 (15 MILLIMOLAR) AND REMARK 900 NACL (15 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQR RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE REMARK 900 PRESENCE OF NICL2 REMARK 900 RELATED ID: 1ZQS RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF TLCL (0.5 MILLIMOLAR) REMARK 900 RELATED ID: 1ZQT RELATED DB: PDB REMARK 900 DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE REMARK 900 PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (0.01 MILLIMOLAR) AND REMARK 900 ZNCL2 (0.02 MILLIMOLAR) DBREF 7ICF A 2 335 UNP P06746 DPOB_HUMAN 1 334 DBREF 7ICF T 2 8 PDB 7ICF 7ICF 2 8 DBREF 7ICF P 1 6 PDB 7ICF 7ICF 1 6 SEQRES 1 T 7 DC DA DT DC DT DG DT SEQRES 1 P 6 DC DA DG DA DT DG SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU HET CD A 340 1 HET NA A 341 1 HET NA A 342 1 HET CD A 343 1 HETNAM CD CADMIUM ION HETNAM NA SODIUM ION FORMUL 4 CD 2(CD 2+) FORMUL 5 NA 2(NA 1+) FORMUL 8 HOH *159(H2 O) HELIX 1 A GLY A 13 ASN A 28 1 16 HELIX 2 B ILE A 33 LYS A 48 1 16 HELIX 3 C SER A 55 LYS A 61 1 7 HELIX 4 D THR A 67 THR A 79 1 13 HELIX 5 E ARG A 83 GLN A 90 1 8 HELIX 6 F ASP A 92 ARG A 102 1 11 HELIX 7 G PRO A 108 GLY A 118 1 11 HELIX 8 H LEU A 122 LYS A 131 1 10 HELIX 9 I HIS A 134 GLU A 147 1 14 HELIX 10 J ARG A 152 VAL A 169 1 18 HELIX 11 K GLY A 179 GLY A 184 1 6 HELIX 12 L PRO A 208 LYS A 220 5 13 HELIX 13 M LYS A 262 THR A 273 5 12 HELIX 14 N ASP A 276 GLU A 288 1 13 HELIX 15 O GLU A 316 ILE A 323 1 8 HELIX 16 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 LINK OP2 DG P 3 NA NA A 342 1555 1555 2.67 LINK OP1 DG P 6 NA NA A 341 1555 1555 2.53 LINK ND1 HIS A 51 CD CD A 343 1555 1555 2.71 LINK O LEU A 62 NA NA A 342 3547 1555 2.42 LINK O THR A 101 NA NA A 341 1555 1555 1.95 LINK O VAL A 103 NA NA A 341 1555 1555 2.53 LINK O ILE A 106 NA NA A 341 1555 1555 2.65 LINK NE2 HIS A 134 CD CD A 343 1565 1555 2.41 LINK OD2 ASP A 192 CD CD A 340 1555 1555 2.94 LINK CD CD A 343 O HOH A 544 1555 1565 2.86 CISPEP 1 GLY A 274 SER A 275 0 -0.42 SITE 1 AC1 2 ASP A 190 ASP A 192 SITE 1 AC2 4 THR A 101 VAL A 103 ILE A 106 DG P 6 SITE 1 AC3 4 LYS A 60 LEU A 62 VAL A 65 DG P 3 SITE 1 AC4 3 HIS A 51 HIS A 134 HOH A 544 CRYST1 177.179 57.710 48.519 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020610 0.00000 TER 123 DT T 8 TER 250 DG P 6 TER 2874 GLU A 335 HETATM 2875 CD CD A 340 69.878 32.243 50.068 1.00 94.79 CD HETATM 2876 NA NA A 341 59.320 30.868 58.988 1.00 29.91 NA HETATM 2877 NA NA A 342 41.261 33.129 46.119 1.00 22.99 NA HETATM 2878 CD CD A 343 64.011 71.746 56.387 1.00 48.46 CD HETATM 2879 O HOH T 517 58.161 15.197 51.261 1.00 91.46 O HETATM 2880 O HOH T 525 52.127 27.144 42.224 1.00 28.61 O HETATM 2881 O HOH T 526 53.356 30.463 42.747 1.00 45.15 O HETATM 2882 O HOH T 527 58.865 23.968 48.428 1.00 45.19 O HETATM 2883 O HOH T 546 60.857 16.541 47.340 1.00 78.74 O HETATM 2884 O HOH T 547 55.678 17.177 54.140 1.00 9.06 O HETATM 2885 O HOH T 564 56.982 21.669 52.296 1.00 1.00 O HETATM 2886 O HOH T 573 58.206 23.788 40.822 1.00 71.30 O HETATM 2887 O HOH T 617 61.767 25.317 44.225 1.00 48.28 O HETATM 2888 O HOH T 634 45.239 20.025 49.673 1.00 60.08 O HETATM 2889 O HOH T 670 54.294 22.522 50.702 1.00 10.30 O HETATM 2890 O HOH P 510 53.759 32.387 53.407 1.00 16.24 O HETATM 2891 O HOH P 511 48.255 25.876 50.929 1.00 21.64 O HETATM 2892 O HOH P 524 46.119 22.223 33.469 1.00 28.29 O HETATM 2893 O HOH P 540 48.121 28.902 42.507 1.00 46.81 O HETATM 2894 O HOH P 566 63.730 32.779 55.603 1.00 31.69 O HETATM 2895 O HOH P 567 61.812 34.561 54.702 1.00 91.76 O HETATM 2896 O HOH P 568 51.246 26.163 56.098 1.00 45.05 O HETATM 2897 O HOH P 570 45.647 31.877 44.290 1.00 53.86 O HETATM 2898 O HOH P 571 48.684 23.182 38.578 1.00 33.22 O HETATM 2899 O HOH P 595 54.456 25.164 51.800 1.00 42.15 O HETATM 2900 O HOH P 598 49.350 24.256 42.097 1.00 83.40 O HETATM 2901 O HOH P 599 49.539 27.485 40.539 1.00 59.34 O HETATM 2902 O HOH P 612 50.969 33.413 54.885 1.00 44.77 O HETATM 2903 O HOH P 613 47.176 33.758 53.920 1.00 78.72 O HETATM 2904 O HOH P 614 46.108 28.453 54.114 1.00 67.11 O HETATM 2905 O HOH P 615 41.682 31.497 49.685 1.00 89.13 O HETATM 2906 O HOH P 635 43.452 23.706 46.443 1.00 60.34 O HETATM 2907 O HOH P 648 56.594 33.011 54.198 1.00 50.98 O HETATM 2908 O HOH P 655 53.593 32.301 46.841 1.00 53.94 O HETATM 2909 O HOH P 663 61.222 34.314 46.255 1.00 14.37 O HETATM 2910 O HOH P 664 64.670 31.876 48.948 1.00 33.58 O HETATM 2911 O HOH A 501 84.737 40.197 28.248 1.00 67.75 O HETATM 2912 O HOH A 502 76.065 33.241 50.658 1.00 9.80 O HETATM 2913 O HOH A 503 73.038 29.466 60.251 1.00 18.47 O HETATM 2914 O HOH A 505 65.315 32.064 60.974 1.00 10.72 O HETATM 2915 O HOH A 506 53.054 48.385 48.771 1.00 89.05 O HETATM 2916 O HOH A 507 87.154 39.576 52.017 1.00 36.73 O HETATM 2917 O HOH A 508 74.394 35.649 31.856 1.00 33.84 O HETATM 2918 O HOH A 509 65.420 13.415 53.092 1.00 21.54 O HETATM 2919 O HOH A 512 57.672 19.815 53.760 1.00 18.09 O HETATM 2920 O HOH A 513 60.076 22.913 51.519 1.00 37.03 O HETATM 2921 O HOH A 514 66.057 28.988 63.429 1.00 5.95 O HETATM 2922 O HOH A 515 60.636 13.724 58.552 1.00 52.78 O HETATM 2923 O HOH A 516 62.546 12.594 59.146 1.00 65.44 O HETATM 2924 O HOH A 518 73.265 15.509 60.376 1.00 48.22 O HETATM 2925 O HOH A 519 69.985 13.321 52.652 1.00 75.75 O HETATM 2926 O HOH A 520 79.011 17.080 57.155 1.00 73.52 O HETATM 2927 O HOH A 521 79.820 25.867 58.436 1.00 4.99 O HETATM 2928 O HOH A 523 71.299 32.650 59.019 1.00 43.55 O HETATM 2929 O HOH A 528 72.155 43.119 52.561 1.00 84.56 O HETATM 2930 O HOH A 529 74.201 41.235 54.665 1.00 89.39 O HETATM 2931 O HOH A 530 81.336 35.120 53.443 1.00 15.97 O HETATM 2932 O HOH A 531 73.753 34.394 25.652 1.00 62.30 O HETATM 2933 O HOH A 532 72.017 40.108 44.799 1.00 67.50 O HETATM 2934 O HOH A 533 72.221 29.226 57.511 1.00 18.10 O HETATM 2935 O HOH A 534 66.638 31.998 54.504 1.00 67.50 O HETATM 2936 O HOH A 535 63.895 30.868 42.077 1.00100.00 O HETATM 2937 O HOH A 536 72.147 36.437 29.852 1.00 45.85 O HETATM 2938 O HOH A 537 62.076 25.517 34.527 1.00 95.58 O HETATM 2939 O HOH A 538 65.535 27.094 38.855 1.00 65.77 O HETATM 2940 O HOH A 539 55.556 24.261 54.499 1.00 22.75 O HETATM 2941 O HOH A 541 70.389 11.854 41.714 1.00 19.75 O HETATM 2942 O HOH A 542 74.191 12.730 53.609 1.00 81.59 O HETATM 2943 O HOH A 543 70.193 13.431 60.143 1.00 65.27 O HETATM 2944 O HOH A 544 66.551 14.817 55.325 1.00 52.23 O HETATM 2945 O HOH A 545 60.804 15.741 41.759 1.00 53.21 O HETATM 2946 O HOH A 548 64.884 28.561 55.295 1.00 59.49 O HETATM 2947 O HOH A 549 68.061 29.511 51.934 1.00 89.14 O HETATM 2948 O HOH A 550 76.649 15.913 32.318 1.00 25.51 O HETATM 2949 O HOH A 551 83.860 16.988 30.577 1.00 88.15 O HETATM 2950 O HOH A 552 84.680 15.293 35.200 1.00 55.05 O HETATM 2951 O HOH A 553 61.555 60.446 63.784 1.00 51.15 O HETATM 2952 O HOH A 554 61.048 64.392 63.550 1.00 97.19 O HETATM 2953 O HOH A 555 72.915 45.353 37.749 1.00 33.95 O HETATM 2954 O HOH A 556 47.304 48.607 49.415 1.00 34.19 O HETATM 2955 O HOH A 557 70.959 42.924 37.661 1.00 28.67 O HETATM 2956 O HOH A 558 44.680 36.409 62.680 1.00 55.53 O HETATM 2957 O HOH A 560 43.113 43.938 62.256 1.00 90.58 O HETATM 2958 O HOH A 561 44.484 41.626 64.050 1.00 42.90 O HETATM 2959 O HOH A 562 55.640 43.833 68.137 1.00 21.39 O HETATM 2960 O HOH A 563 58.479 38.851 71.009 1.00 85.06 O HETATM 2961 O HOH A 565 58.309 25.800 52.106 1.00 12.72 O HETATM 2962 O HOH A 572 39.618 48.596 59.134 1.00 69.79 O HETATM 2963 O HOH A 575 68.285 29.154 57.982 1.00 69.60 O HETATM 2964 O HOH A 576 82.584 30.612 44.425 1.00 23.05 O HETATM 2965 O HOH A 577 78.685 23.193 59.082 1.00 7.32 O HETATM 2966 O HOH A 578 70.673 39.147 27.746 1.00 25.59 O HETATM 2967 O HOH A 579 70.458 34.374 25.652 1.00 37.48 O HETATM 2968 O HOH A 580 65.882 42.639 31.792 1.00 76.15 O HETATM 2969 O HOH A 581 64.507 46.537 33.656 1.00 64.06 O HETATM 2970 O HOH A 582 64.554 44.508 31.896 1.00 84.57 O HETATM 2971 O HOH A 583 80.118 54.320 32.560 1.00100.00 O HETATM 2972 O HOH A 584 76.538 42.491 41.477 1.00 17.96 O HETATM 2973 O HOH A 585 66.246 30.424 40.006 1.00 31.44 O HETATM 2974 O HOH A 587 71.266 36.035 46.994 1.00 36.75 O HETATM 2975 O HOH A 589 86.285 20.053 58.025 1.00 59.29 O HETATM 2976 O HOH A 590 70.254 23.896 66.335 1.00 43.70 O HETATM 2977 O HOH A 591 74.923 20.745 64.882 1.00 70.73 O HETATM 2978 O HOH A 592 71.680 40.239 36.158 1.00 36.45 O HETATM 2979 O HOH A 593 67.315 42.000 30.033 1.00 45.60 O HETATM 2980 O HOH A 594 61.303 25.478 47.234 1.00 39.84 O HETATM 2981 O HOH A 596 59.973 19.349 52.957 1.00 28.50 O HETATM 2982 O HOH A 597 51.111 20.090 58.489 1.00 40.39 O HETATM 2983 O HOH A 600 64.054 27.672 61.580 1.00 19.61 O HETATM 2984 O HOH A 601 61.536 33.100 58.862 1.00 81.60 O HETATM 2985 O HOH A 603 43.654 28.339 72.654 1.00 11.94 O HETATM 2986 O HOH A 604 50.120 22.971 73.738 1.00 57.40 O HETATM 2987 O HOH A 606 63.441 59.572 64.941 1.00 67.62 O HETATM 2988 O HOH A 607 61.784 54.708 50.302 1.00 68.08 O HETATM 2989 O HOH A 608 57.320 50.884 49.160 1.00 60.51 O HETATM 2990 O HOH A 610 60.344 43.928 22.594 1.00 82.99 O HETATM 2991 O HOH A 611 63.726 38.681 29.972 1.00 52.73 O HETATM 2992 O HOH A 616 43.963 39.086 52.777 1.00 67.88 O HETATM 2993 O HOH A 618 83.195 30.158 41.555 1.00 11.20 O HETATM 2994 O HOH A 620 78.386 31.001 64.992 1.00 52.92 O HETATM 2995 O HOH A 621 71.485 19.064 66.013 1.00 94.34 O HETATM 2996 O HOH A 622 62.043 17.488 63.248 1.00 85.01 O HETATM 2997 O HOH A 623 60.515 26.416 74.673 1.00 64.93 O HETATM 2998 O HOH A 624 64.019 24.380 28.379 1.00 37.87 O HETATM 2999 O HOH A 625 69.986 20.514 30.254 1.00 83.70 O HETATM 3000 O HOH A 626 71.721 36.966 27.462 1.00 79.58 O HETATM 3001 O HOH A 627 80.348 39.103 24.427 1.00 83.67 O HETATM 3002 O HOH A 628 63.429 36.058 22.861 1.00 88.80 O HETATM 3003 O HOH A 629 69.383 34.511 36.042 1.00 75.85 O HETATM 3004 O HOH A 630 67.126 49.953 38.095 1.00 42.24 O HETATM 3005 O HOH A 631 73.416 39.975 48.086 1.00 99.17 O HETATM 3006 O HOH A 637 79.952 14.586 67.690 1.00 82.77 O HETATM 3007 O HOH A 638 48.159 38.088 76.266 1.00 80.93 O HETATM 3008 O HOH A 639 55.571 40.016 70.307 1.00 66.30 O HETATM 3009 O HOH A 640 60.724 37.242 67.292 1.00 64.09 O HETATM 3010 O HOH A 641 43.203 38.961 59.689 1.00 59.20 O HETATM 3011 O HOH A 642 60.138 62.722 61.644 1.00 13.16 O HETATM 3012 O HOH A 643 58.534 13.608 68.539 1.00 70.50 O HETATM 3013 O HOH A 644 74.201 10.133 36.368 1.00 84.46 O HETATM 3014 O HOH A 645 55.397 47.130 75.774 1.00 69.18 O HETATM 3015 O HOH A 646 40.324 44.087 73.355 1.00100.00 O HETATM 3016 O HOH A 647 49.043 35.804 78.328 1.00 91.96 O HETATM 3017 O HOH A 649 46.694 54.453 69.534 1.00 66.65 O HETATM 3018 O HOH A 650 57.424 43.426 73.775 1.00 36.63 O HETATM 3019 O HOH A 651 75.569 33.941 30.279 1.00 24.11 O HETATM 3020 O HOH A 652 79.928 31.418 27.204 1.00 90.69 O HETATM 3021 O HOH A 653 85.865 33.019 45.845 1.00 45.84 O HETATM 3022 O HOH A 654 69.917 9.874 44.262 1.00 83.53 O HETATM 3023 O HOH A 656 83.649 25.972 38.920 1.00 40.24 O HETATM 3024 O HOH A 657 87.836 48.529 40.383 1.00 78.64 O HETATM 3025 O HOH A 658 68.939 30.623 20.044 1.00 51.10 O HETATM 3026 O HOH A 660 71.572 35.094 51.035 1.00 32.32 O HETATM 3027 O HOH A 661 71.159 35.279 54.354 1.00 26.93 O HETATM 3028 O HOH A 662 74.308 35.454 52.029 1.00 47.49 O HETATM 3029 O HOH A 665 71.274 37.030 59.635 1.00 27.72 O HETATM 3030 O HOH A 666 82.080 31.712 38.713 1.00 29.51 O HETATM 3031 O HOH A 667 82.999 36.727 36.227 1.00 28.43 O HETATM 3032 O HOH A 668 66.643 31.055 33.883 1.00 33.24 O HETATM 3033 O HOH A 669 68.128 25.411 68.889 1.00 16.91 O HETATM 3034 O HOH A 671 71.084 33.444 45.944 1.00 26.36 O HETATM 3035 O HOH A 672 64.613 34.085 39.757 1.00 47.87 O HETATM 3036 O HOH A 673 63.707 31.129 45.463 1.00 43.12 O HETATM 3037 O HOH A 674 53.284 41.215 66.410 1.00 50.17 O CONECT 167 2877 CONECT 229 2876 CONECT 585 2878 CONECT 969 2876 CONECT 987 2876 CONECT 1004 2876 CONECT 1700 2875 CONECT 2875 1700 CONECT 2876 229 969 987 1004 CONECT 2877 167 CONECT 2878 585 MASTER 818 0 4 16 7 0 4 6 3034 3 11 28 END